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arXiv · 2103.09234

Steady-state dynamics of exclusion process with local reversible association of particles

Akriti Jindal·Anatoly B. Kolomeisky·Arvind Kumar Gupta
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Abstract

Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these observations, we developed a theoretical model for collective dynamics of biological molecular motors that accounts for local association/dissociation events. In our approach, the particles interacting only via exclusion move along a lattice in the preferred direction, while the reversible associations are allowed at the specific site far away from the boundaries. Considering the association/dissociation site as a local defect, the inhomogeneous system is approximated as two coupled homogeneous sub-lattices. This allows us to obtain a full description of stationary dynamics in the system. It is found that the number and nature of steady-state phases strongly depend on the values of association and dissociation transition rates. Microscopic arguments to explain these observations, as well as biological implications, are also discussed. Theoretical predictions agree well with extensive Monte Carlo computer simulations.

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Akriti Jindal, Anatoly B. Kolomeisky, Arvind Kumar Gupta. 2021-03-16. Steady-state dynamics of exclusion process with local reversible association of particles. https://doi.org/10.1007/s10955-021-02843-w

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