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arXiv · 2607.00389

Efficient LCE Queries and Lexicographic Minimizers on Sliding Suffix Trees

Toshiharu Minematsu·Shunsuke Inenaga
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Abstract

We study longest-common-extension (LCE) queries and lexicographic minimizer maintenance on the suffix tree of a sliding window. The main difficulty is that a sliding suffix tree is maintained in an implicit Ukkonen-style form: some suffixes of the current window are not represented by leaves. We show that the longest implicit (i.e. non-leaf) suffix induces a periodic representative map that folds every implicit suffix to an explicit suffix leaf in constant time. Combined with leaf pointers [Leonard et al., PSC 2026] and a dynamic LCA data structure [Cole & Hariharan, SICOMP 2005], this yields a linear-space data structure with amortized constant-time window shifts and worst-case constant-time LCE queries over a constant-size alphabet. For minimizers, the LCE structure gives a direct exact solution, but it uses more machinery than fixed-depth comparisons require. We therefore give an alternative LCE-free algorithm that reports minimizers in constant time per window shift, which is built on BP-linked suffix trees [Sumiyoshi et al, SPIRE 2024] and a standard order maintenance data structure (e.g. [Bender et al., ESA 2002]).

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Toshiharu Minematsu, Shunsuke Inenaga. 2026-07-01. Efficient LCE Queries and Lexicographic Minimizers on Sliding Suffix Trees. https://arxiv.org/abs/2607.00389

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