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Shunsuke Inenaga

Publications and source records attributed to Shunsuke Inenaga.

At least 19 recordsLinked to original sources

Tight bounds on the number of non-equivalent parameterized squares in a word

Two words $x,y$ of the same length are said to be \emph{parameterized equivalent} if there exists a character bijection that transforms $x$ into $y$. A word $w$ is called a parameterized square if $w$ is a concatenation of two parameterized equivalent words. Kociumaka et al. [TCS 2016] showed that in a word of length $n$ that contains $σ$ distinct characters, the number of \emph{parameterized squares} that are non-equivalent with respect to parameterized equivalence is at most $2 σ! n$. In this paper, we show that the maximum number of non-equivalent parameterized squares is less than $σn$, which significantly improves the best-known upper bound by Kociumaka et al. Moreover, we construct a family of words containing $Ω(σn)$ non-equivalent parameterized squares, which demonstrates that the upper bound is asymptotically tight.

cs.DS

The Parameterized Periodicity Lemma

Fine and Wilf [Proc. Amer. Math. Soc. 1965] showed that any string of length at least $p+q-d$ with periods $p$ and $q$ also has period $d=\gcd(p,q)$. For parameterized strings, Apostolico and Giancarlo [Discrete Appl. Math. 2008] proved an analogue with length bound $p+q$, assuming that the two induced bijections commute. Ideguchi et al. [SPIRE 2023] removed this assumption and gave the bound $p+q+\min(p,q)(σ-1)$, where $σ$ is the number of distinct letters. This was later improved by Hamai et al. [SPIRE 2024] to $p+q+\min(p,q)(σ-2)$, which was used to bound the number of non-equivalent parameterized squares. In this paper, we establish the optimal Fine--Wilf type bound for parameterized strings. Namely, if a string $s$ containing $σ$ distinct letters has parameterized periods $p$ and $q$ and satisfies $|s| \ge p+q+(σ-3)d+1$, where $d=\gcd(p,q)$, then $d$ is also a parameterized period of $s$. We also give matching lower-bound instances, proving that our bound is optimal for any $σ\geq 2$.

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Online computation of maximal closed substrings

A non-empty string is closed if it has length one or its longest border appears exactly twice in the string. An occurrence of a closed substring is a maximal closed substring (MCS) if it cannot be extended to the left or to the right while preserving closedness. MCSs can be regarded as a general class of maximal repetitive structures including runs. In this paper, we study the computation of MCSs of a string given in an online manner, where one character is appended to the string at a time. Our algorithm detects newly formed MCSs after each append operation by using the rightmost previous occurrence of each suffix. To support this efficiently, we introduce the link-cut suffix tree (LCST), a novel data structure combining an online suffix tree with a link-cut tree. The LCST maintains rightmost occurrence information for substrings represented in the suffix tree in $O(n \log n)$ total time and $O(n)$ space, where $n$ is the length of the input string. Using the LCST, we obtain an $O(n \log n)$-time online algorithm for computing all MCSs, which is worst-case optimal. As further direct applications of the LCST, we obtain online algorithms for rightmost LZ77 factorizations and most recent match queries.

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Compact Enumeration of Maximal Closed Substrings in Run-Length Encoded Strings

A string $w$ is closed if $|w|=1$, or if $w$ has a non-empty proper border occurring only as its prefix and suffix. A maximal closed substring (MCS) is a maximal occurrence of a closed string; equivalently, it is a maximal closed repeat (MCR). We study the problem of enumerating all MCS occurrences directly from the run-length encoding (RLE) of a string. For a string $T$ of length $n$ with RLE size $m$, we give a compact representation of all MCS occurrences whose worst-case size is $O(m^2)$, and show that this bound is tight for this representation. Our approach is based on a characterization of MCS occurrences in terms of consecutive occurrences of their longest borders, together with data structures built on the RLE of $T$. Denoting the resulting representation by $\mathcal{F}$, we compute it in $O(m\log^2 m + |\mathcal{F}|\log m)$ time using $O(m)$ working space.

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Sliding suffix trees revisited

The sliding suffix tree (Fiala \& Greene, 1989) is a suffix tree that is maintained for a sliding window $W_i = T[i..i+d-1]$ of size $d$ that shifts over an input text $T$ of length $n$ from left to right, for increasing $i = 1, \ldots, n-d+1$. It is known that the sliding suffix tree can be maintained in $O(n \log σ)$ time with $O(d)$ space, where $σ$ is the alphabet size. Updating the sliding suffix tree from $W_i = T[i..i+d-1]$ to $W_{i+1} = T[i+1..i+d]$ requires the following three major tasks: (1) Delete the leaf that represents the longest suffix $W_i$, (2) Insert new leaves that represent the suffixes of $W_{i+1}$ that appear exactly once in $W_{i+1}$, and (3) After the leaf deletion due to Task (1) and each leaf insertion due to Task (2), maintain the label $\langle \ell, r \rangle$ of every edge as a valid pair in the new window $W_{i+1}$, such that $i+1 \leq \ell \leq r \leq i+d$. In this paper, we present the first algorithm that performs Task (3) in $O(1)$ worst-case time per node deletion/insertion, which leads to another alternative to efficient sliding suffix tree construction. This is an improvement over the existing algorithms by Larsson (1996, 1999) and by Senft (2005) both of which can only perform Task (3) in $O(1)$ amortized time. Our key data structure is a non-trivial extension of leaf pointers, which were originally proposed by Brodnik and Jekovec (2018) for pattern matching with sliding suffix trees.

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Relaxation of Square-Freeness

We extend the analysis of nonrepetitive sequences of Entringer et al. [Journal of Combinatorial Theory, 1974] to relaxations of equality testing under nonstandard equivalence relations, in particular parameterized equivalence and order-preserving equivalence. For this setting, we introduce $\ell^+$-squares, defined as squares whose total length is at least $2\ell$. We obtain an infinite $3^+$-parameterized-square-free ternary word and an infinite $3^+$-order-preserving-square-free binary word through an approach based on combinatorics on words. In addition, we report the longest $\ell^+$-square-free words across several equivalence relations.

math.CO

Fully Persistent Dynamic LCE via AVL Trees and AVL Grammars

We study fully persistent dynamic strings with equality and longest common extension (LCE) queries. Straightforward full persistence is problematic for the splay-based FeST structure, since the same unbalanced past version can be reused indefinitely and the usual amortized analysis no longer applies. We give a fully persistent dynamic LCE structure, called FeAVL, based on path copying over AVL trees. For an operation involving string(s) of total length $n$, it supports split, concatenate, and single-character updates in worst-case $O(\log n)$ time, equality in worst-case $O(\log n)$ time w.h.p., and LCE in worst-case $O(\log n+\log^2\ell)$ time w.h.p., where $\ell$ is the answer; each update creates only $O(\log n)$ new permanent nodes. We also give a grammar-compressed instantiation via AVL grammars: starting from an initial grammar of size $g_0$, after $U$ updates, the total number of permanent grammar nodes is $O(g_0+I+U\log n_{\max})$, where $I$ is the number of inserted fresh characters and $n_{\max}$ is the maximum string length appearing during the update sequence.

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Output-Sensitive Construction of CDAWGs from BWT-Runs

The compact directed acyclic word graph (CDAWG) of a string can be viewed in two equivalent ways: as the edge-compacted DAWG of the string, and as the DAG obtained from the suffix tree by merging the nodes whose subtrees are isomorphic. By exploiting these two views in opposite directions, we show how to build, for the (reversed) input string of length $n$, the CDAWG with $e_L$ edges in $O(e_L\log n\log(n/r))$ time with $O(r\log(n/r)+e_L)$ words of working space, provided that the fully functional compressed suffix tree of Gagie, Navarro, and Prezza of size $O(r\log(n/r))$ is available. Here, $r$ denotes the number of BWT-runs of the input string.

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Efficient LCE Queries and Lexicographic Minimizers on Sliding Suffix Trees

We study longest-common-extension (LCE) queries and lexicographic minimizer maintenance on the suffix tree of a sliding window. The main difficulty is that a sliding suffix tree is maintained in an implicit Ukkonen-style form: some suffixes of the current window are not represented by leaves. We show that the longest implicit (i.e. non-leaf) suffix induces a periodic representative map that folds every implicit suffix to an explicit suffix leaf in constant time. Combined with leaf pointers [Leonard et al., PSC 2026] and a dynamic LCA data structure [Cole & Hariharan, SICOMP 2005], this yields a linear-space data structure with amortized constant-time window shifts and worst-case constant-time LCE queries over a constant-size alphabet. For minimizers, the LCE structure gives a direct exact solution, but it uses more machinery than fixed-depth comparisons require. We therefore give an alternative LCE-free algorithm that reports minimizers in constant time per window shift, which is built on BP-linked suffix trees [Sumiyoshi et al, SPIRE 2024] and a standard order maintenance data structure (e.g. [Bender et al., ESA 2002]).

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Grammar Index By Induced Suffix Sorting

Pattern matching is the most central task for text indices. Most recent indices leverage compression techniques to make pattern matching feasible for massive but highly-compressible datasets. Within this kind of indices, we propose a new compressed text index built upon a grammar compression based on induced suffix sorting [Nunes et al., DCC'18]. We show that this grammar exhibits a locality sensitive parsing property, which allows us to specify, given a pattern $P$, certain substrings of $P$, called cores, that are similarly parsed in the text grammar whenever these occurrences are extensible to occurrences of $P$. Supported by the cores, given a pattern of length $m$, we can locate all its $occ$ occurrences in a text $T$ of length $n$ within $O(m \lg |\mathcal{S}| + occ_C \lg|\mathcal{S}| \lg n + occ)$ time, where $\mathcal{S}$ is the set of all characters and non-terminals, $occ$ is the number of occurrences, and $occ_C$ is the number of occurrences of a chosen core $C$ of $P$ in the right hand side of all production rules of the grammar of $T$. Our grammar index requires $O(g)$ words of space and can be built in $O(n)$ time using $O(g)$ working space, where $g$ is the sum of the right hand sides of all production rules. We underline the strength of our grammar index with an exhaustive practical evaluation that gives evidence that our proposed solution excels at locating long patterns in highly-repetitive texts.

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Counting Distinct (Non-)Crossing Substrings in Optimal Time

Let $w$ be a string of length $n$. The problem of counting factors crossing a position -- Problem 64 from the textbook ``125 Problems in Text Algorithms'' [Crochemore, Lecroq, and Rytter, 2021] -- asks to count the number $\mathcal{C}(w,k)$ (resp. $\mathcal{N}(w,k)$) of distinct substrings in $w$ that have occurrences containing (resp. not containing) a position $k$ in $w$. The solutions provided in their textbook compute $\mathcal{C}(w,k)$ and $\mathcal{N}(w,k)$ in $O(n)$ time for a single position $k$ in $w$, and thus a direct application would require $O(n^2)$ time for all positions $k = 1, \ldots, n$ in $w$. Their solution is designed for constant-size alphabets. In this paper, we present new algorithms which compute $\mathcal{C}(w,k)$ in $O(n)$ total time for general ordered alphabets, and $\mathcal{N}(w,k)$ in $O(n)$ total time for linearly sortable alphabets,for all positions $k = 1, \ldots, n$ in $w$. We further derive model-dependent optimal bounds by separating the algorithms into preprocessing and linear-time postprocessing: for $\mathcal{C}$ the preprocessing is run reporting, and for $\mathcal{N}$ it is preprocessing based on longest previous non-overlapping factors (LPnF) and longest next factors (LNF). In particular, all values $\mathcal{C}(w,k)$ can be computed in $O(n\log n)$ time over general unordered alphabets in which direct accesses to alphabet characters are restricted to equality tests, and in $O(n\logσ)$ time in the word RAM model, where $σ$ denotes the number of distinct characters occurring in $w$. For $\mathcal{N}(w,k)$, the equality-testing complexity over general unordered alphabets is $Θ(n^2)$. We also show that our upper bounds are optimal for all of the aforementioned alphabet assumptions and computation models.

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On the sensitivity of CDAWG-grammars

The compact directed acyclic word graph (CDAWG) [Blumer et al. 1987] of a string is the minimal compact automaton that recognizes all the suffixes of the string. CDAWGs can be used for various string tasks including text pattern searching, data compression, and pattern discovery. The CDAWG-grammar [Belazzougui & Cunial 2017] is a grammar-based text compression based on the CDAWG, which allows for representing the CDAWG in $O(e)$ space without storing the string, where $e$ denotes the number of CDAWG edges. Let $g$ be the size of the CDAWG-grammar for the input string $T$. We show that the worst-case additive sensitivity of the CDAWG-grammar is lower bounded by $3g-21$ and is upper bounded by $8 g + 4$.

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Sensitivity of Repetitiveness Measures to String Reversal

We study the impact that string reversal can have on several repetitiveness measures. First, we exhibit an infinite family of strings where the number, $r$, of runs in the run-length encoding of the Burrows--Wheeler transform (BWT) can increase additively by $Θ(n)$ when reversing the string. This substantially improves the known $Ω(\log n)$ lower-bound for the additive sensitivity of $r$ and it is asymptotically tight. We generalize our result to other variants of the BWT, including the variant with an appended end-of-string symbol and the bijective BWT. We show that an analogous result holds for the size $z$ of the Lempel--Ziv 77 (LZ) parsing of the text, and also for some of its variants, including the non-overlapping LZ parsing, and the LZ-end parsing. Moreover, we describe a family of strings for which the ratio $z(w^R)/z(w)$ approaches $3$ from below as $|w|\rightarrow \infty$. We also show an asymptotically tight lower-bound of $Θ(n)$ for the additive sensitivity of the size $v$ of the smallest lexicographic parsing to string reversal. Finally, we show that the multiplicative sensitivity of $v$ to reversing the string is $Θ(\log n)$, and this lower-bound is also tight. Overall, our results expose the limitations of repetitiveness measures that are widely used in practice, against string reversal -- a simple and natural data transformation.

cs.DS

Online Computation of Palindromes and Suffix Trees on Tries

We consider the problems of computing maximal palindromes and distinct palindromes in a trie. A trie is a natural generalization of a string, which can be seen as a single-path tree. There is a linear-time offline algorithm to compute maximal palindromes and distinct palindromes in a given (static) trie whose edge-labels are drawn from a linearly-sortable alphabet [Mieno et al., ISAAC 2022]. In this paper, we tackle problems of palindrome enumeration on dynamic tries which support leaf additions and leaf deletions. We propose the first sub-quadratic algorithms to enumerate palindromes in a dynamic trie. For maximal palindromes, we propose an algorithm that runs in $O(N \min(\log h, σ))$ time and uses $O(N)$ space, where $N$ is the maximum number of edges in the trie, $σ$ is the size of the alphabet, and $h$ is the height of the trie. For distinct palindromes, we develop several online algorithms based on different algorithmic frameworks, including approaches using the EERTREE (a.k.a. palindromic tree) and the suffix tree of a trie. These algorithms support leaf insertions and deletions in the trie and achieve different time and space trade-offs. Furthermore, as a by-product, we present online algorithms to construct the suffix tree and the EERTREE of the input trie, which is of independent interest.

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LZBE: an LZ-style compressor supporting $O(\log n)$-time random access

An LZ-like factorization of a string divides it into factors, each being either a single character or a copy of a preceding substring. While grammar-based compression schemes support efficient random access with space linear in the compressed size, no comparable guarantees are known for general LZ-like factorizations. This limitation motivated restricted variants such as LZ-End [Kreft and Navarro, 2013] and height-bounded LZ (LZHB) [Bannai et al., 2024], which trade off some compression efficiency for faster access. In this paper, we introduce LZ-Begin-End (LZBE), a new LZ-like variant in which every copy factor must refer to a contiguous sequence of preceding factors. This structural restriction ensures that any context-free grammar can be transformed into an LZBE factorization of the same size. We further study the greedy LZBE factorization, which selects each copy factor to be as long as possible while processing the input from left to right, and show that it can be computed in linear time. Moreover, we exhibit a family of strings for which the greedy LZBE factorization is asymptotically smaller than the smallest grammar. These results demonstrate that the LZBE scheme is strictly more expressive than grammar-based compression in the worst case. To support fast queries, we propose a data structure for LZBE-compressed strings that permits O(log n)-time random access within space linear in the compressed size, where n is the length of the input string.

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Subsequence Matching and LCS under Cartesian-Tree Equivalence

Two strings of the same length are said to Cartesian-tree match (CT-match) if their Cartesian-trees are isomorphic [Park et al., TCS 2020]. Cartesian-tree matching is a natural model that allows for capturing similarities of numerical sequences. Oizumi et al. [CPM 2022] showed that subsequence pattern matching under CT-matching model (CT-MSeq) can be solved in $O(nm \log \log n)$ time, where $n$ and $m$ are text and pattern lengths, respectively. This current article follows this line of research, and gives the following new results: (1) An $O(nm)$-time CT-MSeq algorithm for binary alphabets; (2) An $O((nm)^{1-ε})$-time conditional lower bound for the CT-MSeq problem on alphabets of size 4, for any constant $ε> 0$, under the Orthogonal Vector Hypothesis (OVH). Further, we introduce the new problem of longest common subsequence under CT-matching (CT-LCS) for two given strings $S$ and $T$ of length $n$, and present the following results: (3) An $O(n^6)$-time CT-LCS algorithm for general ordered alphabets; (4) An $O(n^2 / \log n)$-time CT-LCS algorithm for binary alphabets; (5) An $O(n^{2-ε})$-time conditional lower bound for the CT-LCS problem on alphabets of size 5, for any constant $ε> 0$, under OVH.

cs.DS

Faster and Simpler Online Computation of String Net Frequency

An occurrence of a repeated substring $u$ in a string $S$ is called a net occurrence if extending the occurrence to the left or to the right decreases the number of occurrences to 1. The net frequency (NF) of a repeated substring $u$ in a string $S$ is the number of net occurrences of $u$ in $S$. Very recently, Guo et al. [SPIRE 2024] proposed an online $O(n \log σ)$-time algorithm that maintains a data structure of $O(n)$ space which answers Single-NF queries in $O(m\log σ+ σ^2)$ time and reports all answers of the All-NF problem in $O(nσ^2)$ time. Here, $n$ is the length of the input string $S$, $m$ is the query pattern length, and $σ$ is the alphabet size. The $σ^2$ term is a major drawback of their method since computing string net frequencies is originally motivated for Chinese language processing where $σ$ can be thousands large. This paper presents an improved online $O(n \log σ)$-time algorithm, which answers Single-NF queries in $O(m \log σ)$ time and reports all answers to the All-NF problem in output-optimal $O(|\mathsf{NF}^+(S)|)$ time, where $\mathsf{NF}^+(S)$ is the set of substrings of $S$ paired with their positive NF values. We note that $|\mathsf{NF}^+(S)| = O(n)$ always holds. In contract to Guo et al.'s algorithm that is based on Ukkonen's suffix tree construction, our algorithm is based on Weiner's suffix tree construction.

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Nyldon Factorization of Thue-Morse Words and Fibonacci Words

The Nyldon factorization is a string factorization that is a non-decreasing product of Nyldon words. Nyldon words and Nyldon factorizations are recently defined combinatorial objects inspired by the well-known Lyndon words and Lyndon factorizations. In this paper, we investigate the Nyldon factorization of several words. First, we fully characterize the Nyldon factorizations of the (finite) Fibonacci and the (finite) Thue-Morse words. Moreover, we show that there exists a non-decreasing product of Nyldon words that is a factorization of the infinite Thue-Morse word.

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