Swimming-limited aggregation of bacteria in liquid crystals

Abstract

Aggregation and fragmentation processes are widespread in engineering and the natural world. Here, we investigate a distinct colloidal aggregation mechanism in an active system of motile bacteria in highly anisotropic environments. Specifically, we examine \textit{Escherichia coli} bacteria swimming in one-dimensional confinement within nematic liquid crystals and observe long-lived chains of bacteria swimming along the nematic director. Crucially, we find that longer chains swim faster, in apparent contradiction to fundamental force-balance models that predict the swimming speed to be independent of chain length, as chains should swim at the average speed of their individual components. The seeming discrepancy is resolved by recognizing that chains do not form randomly but self-organize due to the relative velocities between bacteria. To elucidate the physical mechanism behind this active aggregation process, we combine our experimental findings with a minimal model of nearest-neighbour aggregation and agent-based simulations of active particles aggregating in one dimension. Consistent with experimental observations, our agent-based simulations reveal a positive correlation between the length and speed of dynamically self-assembled chains of active particles, with the correlation depending on the variance of the individual speed distribution and diminishing over time. Together, our experiments and theoretical models indicate a distinct regime of swimming-limited aggregation whose evolution is constrained by the intrinsic speed distribution of active agents, providing new insight into bacterial self-organization.