FlexRL: an R package for Flexible Record Linkage and Linked Data Quality Assessment

Abstract

FlexRL is an R package for probabilistic record linkage and inference on linked data. It provides a method to link observations from the same entities across two data sources that lack a unique identifier but share partially identifying variables. This method fits a hierarchical latent variable model of the data generation process, rather than classifying pairs of records from the comparison of their values, and accommodates registration errors and variables changing over time. Since linkage may affect subsequent analyses, the package also provides tools to assess the linked data quality as functions of the linkage decision rule. Two false discovery proportion estimators are implemented: a probabilistic approach contingent on the record linkage model and an augmented approach relying on an auxiliary estimation using synthetic data. Several measures of divergence of the linked sample from the source population are provided. These tools are agnostic to the underlying record linkage model and can be applied to any method. Together, they connect the output of the linkage to the validity of the subsequent analyses. The implementation combines standard R functions and S3 methods with Rcpp computations, resulting in fast execution times and a low memory footprint.