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Lexical Adaptation of Link Grammar to the Biomedical Sublanguage: a Comparative Evaluation of Three Approaches

Sampo Pyysalo·Tapio Salakoski·Sophie Aubin·Adeline Nazarenko
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Abstract

We study the adaptation of Link Grammar Parser to the biomedical sublanguage with a focus on domain terms not found in a general parser lexicon. Using two biomedical corpora, we implement and evaluate three approaches to addressing unknown words: automatic lexicon expansion, the use of morphological clues, and disambiguation using a part-of-speech tagger. We evaluate each approach separately for its effect on parsing performance and consider combinations of these approaches. In addition to a 45% increase in parsing efficiency, we find that the best approach, incorporating information from a domain part-of-speech tagger, offers a statistically signicant 10% relative decrease in error. The adapted parser is available under an open-source license at http://www.it.utu.fi/biolg.

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Sampo Pyysalo, Tapio Salakoski, Sophie Aubin, Adeline Nazarenko. 2006-06-28. Lexical Adaptation of Link Grammar to the Biomedical Sublanguage: a Comparative Evaluation of Three Approaches. https://arxiv.org/abs/cs/0606119

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