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Alain Rapaport

Publications and source records attributed to Alain Rapaport.

At least 19 recordsLinked to original sources

Identifiability and Observability Analysis for Epidemiological Models: Insights on the SIRS Model

The problems of observability and identifiability have been of great interest as previous steps to estimating parameters and initial conditions of dynamical systems to which some known data (observations) are associated. While most works focus on linear and polynomial/rational systems of ODEs, general nonlinear systems have received far less attention and, to the best of our knowledge, no general constructive methodology has been proposed to assess and guarantee parameter and state recoverability in this context. We consider a class of systems of parameterized nonlinear ODEs and some observations, and study if a system of this class is observable, identifiable or jointly observable-identifiable; our goal is to identify its parameters and/or reconstruct the initial condition from the data. To achieve this, we introduce a family of efficient and fully constructive procedures that allow recoverability of the unknowns with low computational cost and address the aforementioned gap. Each procedure is tailored to different observational scenarios and based on the resolution of linear systems. As a case study, we apply these procedures to several epidemic models, with a detailed focus on the SIRS model, demonstrating its joined observability-identifiability when only a portion of the infected individuals is measured, a scenario that has not been studied before. In contrast, for the same observations, the SIR model is observable and identifiable, but not jointly observable-identifiable. This distinction allows us to introduce a novel approach to discriminating between different epidemiological models (SIR vs. SIRS) from short-time data. For these two models, we illustrate the theoretical results through some numerical experiments, validating the approach and highlighting its practical applicability to real-world scenarios.

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About identifiability and observability for a class of dynamical systems

In this note, we propose a novel approach for a class of autonomous dynamical systems that allows, given some observations of the solutions, to identify its parameters and reconstruct the state vector. This approach relies on proving the linear independence between some functions depending on the observations and its derivatives. In particular, we show that, in some cases, only low-order derivatives are necessary, opposed to classical approaches that need more derivation. We also provide different constructive procedures to retrieve the unknowns, which are based on the resolution of some linear systems. Moreover, under some analytic conditions, these unknowns may be retrieved with very few data. We finally apply this approach to some illustrative examples.

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A way to model stochastic perturbations in population dynamics models with bounded realizations

In this paper, we analyze the use of the Ornstein-Uhlenbeck process to model dynamical systems subjected to bounded noisy perturbations. In order to discuss the main characteristics of this new approach we consider some basic models in population dynamics such as the logistic equations and competitive Lotka-Volterra systems. The key is the fact that these perturbations can be ensured to keep inside some interval that can be previously fixed, for instance, by practitioners, even though the resulting model does not generate a random dynamical system. However, one can still analyze the forwards asymptotic behavior of these random differential systems. Moreover, to illustrate the advantages of this type of modeling, we exhibit an example testing the theoretical results with real data, and consequently one can see this method as a realistic one, which can be very useful and helpful for scientists.

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L$\infty$/L1 Duality Results In Optimal Control Problems

We provide a duality result linking the value function for a control problem with supremum cost H under an isoperimetric inequality G $\le$ gmax, and the value function for the same controlled dynamics with cost G and state constraint H $\le$ hmax. This duality is proven for initial conditions at which lower semi-continuity of the value functions can be guaranteed, and is completed with optimality considerations. Furthermore, we provide structural assumptions on the dynamics under which such regularity can be established. As a by-product, we illustrate the partial equivalence between recentworks dealing with non-pharmaceutically controlled epidemics under peak or budget restrictions.

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Optimal synthesis for a class of L $\infty$ optimal control problems in the plane with L 1 constraint on the input

For a particular class of planar dynamics that are linear with respect to the control variable, we show that the feedback strategy ''null-singular null'' is minimizing the maximum of a coordinate over infinite horizon, under a L 1 budget constraint on the control. Moreover, we characterize the optimal cost as a function of the budget. The proof is based on an unusual use of the clock form. This result generalizes the one obtained formerly for the SIR epidemiological model to more general Kolmogorov dynamics, that we illustrate on other biological models.

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The role of permanently resident populations in the two-patches SIR model with commuters

We consider a two-patches SIR model where communication occurs thru commuters, distinguishing explicitly permanently resident populations from commuters populations. We give an explicit formula of the reproduction number, and show how the proportions of permanently resident populations impact it. We exhibit non-intuitive situations for which allowing commuting from a safe territory to another one where the transmission rate is higher can reduce the overall epidemic threshold and avoid an outbreak.

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An optimal feedback control that minimizes the epidemic peak in the SIR model under a budget constraint

We give the explicit solution of the optimal control problem which consists in minimizing the epidemic peak in the SIR model when the control is an attenuation factor of the infectious rate, subject to a L 1 budget constraint. The optimal strategy is given as a feedback control which consists in an singular arc maintaining the infected population at a constant level until the immunity threshold is reached, and no intervention outside the singular arc.

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Equivalent formulations of optimal control problems with maximum cost and applications

We revisit the optimal control problem with maximum cost with the objective to provide different equivalent reformulations suitable to numerical methods. We propose two reformulations in terms of extended Mayer problems with constraint, and another one in terms of a differential inclusion with upper-semi continuous right member but without constraint. For this last one we also propose an approximation scheme of the optimal value from below. These approaches are illustrated and discussed on several examples.

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Convex optimization of bioprocesses

We optimize a general model of bioprocesses, which is nonconvex due to the microbial growth in the biochemical reactors. We formulate a convex relaxation and give conditions guaranteeing its exactness in both the transient and steady state cases. When the growth kinetics are modeled by the Monod function under constant biomass or the Contois function, the relaxation is a second-order cone program, which can be solved efficiently at large scales. We implement the model on a numerical example based on a wastewater treatment system.

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Identifiability and observability of the SIR model with quarantine

We analyze the identifiability and observability of the well-known SIR epidemic model with an additional compartment Q of the sub-population of infected individuals that are placed in quarantine (SIQR model), considering that the flow of individuals placed in quarantine and the size of the quarantine population are known at any time. Then, we focus on the problem of identification of the model parameters, with the synthesis of an observer.

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Second-order cone optimization of the gradostat

We maximize the production of biogas in a gradostat at steady state. The physical decision variables are the water, substrate, and biomass entering each tank and the flows through the interconnecting pipes. Our main technical focus is the nonconvex constraint describing microbial growth. We formulate a relaxation and prove that it is exact when the gradostat is outflow connected, its system matrix is irreducible, and the growth rate satisfies a simple condition. The relaxation has second-order cone representations for the Monod and Contois growth rates. We extend the steady state models to the case of multiple time periods by replacing the derivatives with numerical approximations instead of setting them to zero. The resulting optimizations are second-order cone programs, which can be solved at large scales using standard industrial software.

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Observability, Identifiability and Epidemiology -- A survey

In this review, we recall the concepts of Identifiability and Observability of dynamical systems, and analyse them in the framework of Mathematical Epidemiology. We show that, even for simple and well known models of the literature, these properties are not always fulfilled. We then consider the problem of practical identifiability and observability, which are connected to sensitivity and numerical condition numbers. We also recall the concept of observers to reconstruct state variable of the model which are not observed, and show how it can used with epidemiological models.

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Optimal control of membrane filtration systems

This paper studies an optimal control problem related to membrane filtration processes. A simple mathematical model of membrane fouling is used to capture the dynamic behavior of the filtration process which consists in the attachment of matter onto the membrane during the filtration period and the detachment of matter during the cleaning period. We consider the maximization of the net production of a membrane filtration system (i.e. the filtrate) over a finite time horizon, where control variable is the sequence of filtration/backwashing cycles over the operation time of process. Based on the Pontryagin Maximum Principle, we characterize the optimal control strategy and show that it presents a singular arc. Moreover we prove the existence of an additional switching curve before reaching the terminal state, and also the possibility of having a dispersal curve as a locus where two different strategies are both optimal.

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Optimal and Sub-optimal Feedback Controls for Biogas Production

We revisit the optimal control problem of maximizing biogas production in continuous bio-processes in two directions: 1. over an infinite horizon, 2. with sub-optimal controllers independent of the time horizon. For the first point, we identify a set of optimal controls for the problems with an averaged reward and with a discounted reward when the discount factor goes to 0 and we show that the value functions of both problems are equal. For the finite horizon problem, our approach relies on a framing of the value function by considering a different reward for which the optimal solution has an explicit optimal feedback that is time-independent. In particular, we show that this technique allows us to provide explicit bounds on the sub-optimality of the proposed controllers. The various strategies are finally illustrated on Haldane and Contois growth functions.

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Properties of the chemostat model with aggregated biomass

We revisit the well-known chemostat model, considering that bacteria can be attached together in aggregates or flocs. We distinguish explicitly free and attached compartments in the model and give sufficient conditions for coexistence of these two forms. We then study the case of fast attachment and detachment and shows how it is related to density-dependent growth functions. Finally, we give some insights concerning the cases of multi-specific flocs and different removal rates.

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A new proof of the competitive exclusion principle in the chemostat

We give an new proof of the well-known competitive exclusion principle in the chemostat model with $n$ species competing for a single resource, for any set of increasing growth functions. The proof is constructed by induction on the number of the species, after being ordered. It uses elementary analysis and comparisons of solutions of ordinary differential equations.

math.CA

About the chemostat model with a lateral diffusive compartment

We consider the classical chemostat model with an additional compartment connected by pure diffusion, and analyze its asymptotic properties. We investigate conditions under which this spatial structure is beneficial for species survival and yield conversion, compared to single chemostat. Moreover we look for the best structure (volume repartition and diffusion rate) which minimizes the volume required to attain a desired yield conversion. The analysis reveals that configurations with a single tank connected by diffusion to the input stream can be the most efficient.

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Corrigendum to the chapter "Some aspects concerning the dynamics of stochastic chemostats"

In this paper we correct an error made in a previous work, where a misleading stochastic system was obtained due to a lapse concerning a sign in one of the equations at the beginning of the work such that the results obtained are quite different to the ones developed throughout this paper since the required conditions, and also the results, substantially change. Then, in this work we repair the analysis carried out there, where we studied a simple chemostat model influenced by white noise by making use of the theory of random attractors. Even though the changes are minor, we have chosen to provide a new version of the entire paper instead of a list of changes, for sake of readability. We first perform a change of variable using the Ornstein-Uhlenbeck process, transforming our stochastic model into a system of differential equations with random coefficients. After proving that this random system possesses a unique solution for any initial value, we analyze the existence of random attractors. Finally we illustrate our results with some numerical simulations.

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