arXiv subjects

Alf Gerisch

Publications and source records attributed to Alf Gerisch.

4 recordsLinked to original sources

arXiv2021

A novel nonlocal partial differential equation model of endothelial progenitor cell cluster formation during the early stages of vasculogenesis

Neovascularisation is essential for tissue development and regeneration, in addition to playing a key role in pathological settings such as ischemia and tumour development. Experimental findings in the past two decades have led to the identification of a new mechanism of neovascularisation, cluster-based vasculogenesis, during which endothelial progenitor cells (EPCs) mobilised from the bone marrow are capable of bridging distant vascular beds in a variety of hypoxic settings in vivo. This process is characterised by the formation of EPC clusters during its early stages and, while much progress has been made in identifying various mechanisms underlying cluster formation, we are still far from a comprehensive description of such spatio-temporal dynamics. In order to achieve this, we propose a novel mathematical model of the early stages of cluster-based vasculogenesis, comprising of a system of nonlocal partial differential equations including key mechanisms such as endogenous chemotaxis, matrix degradation, cell proliferation and cell-to-cell adhesion. We conduct a linear stability analysis on the system, solve the equations numerically, conduct a parametric analysis of the numerical solutions of the 1D problem to investigate the role of underlying dynamics on the speed of cluster formation and the size of clusters, and verify the key results of the parametric analysis with simulations of the 2D problem. Our results, which qualitatively compare with data from in vitro experiments, elucidate the complementary role played by endogenous chemotaxis and matrix degradation in the formation of clusters, and they indicate that previous approaches to the nonlocal modelling of cell-to-cell adhesion, while they capture the aggregating effect of cell-to-cell adhesion, are not sufficient to capture its stabilising effect on clusters, and new continuum cell-adhesion modelling strategies are required.

q-bio.CB↗

arXiv2020

Mechanical models of pattern and form in biological tissues: the role of stress-strain constitutive equations

Mechanochemical models of pattern formation in biological tissues have been used to study a variety of biomedical systems and describe the physical interactions between cells and their local surroundings. These models generally consist of a balance equation for the cell density, one for the density of the extracellular matrix (ECM), and a force-balance equation describing the mechanical equilibrium of the cell-ECM system. Assuming this system can be regarded as an isotropic linear viscoelastic material, the force-balance equation is often defined using the Kelvin-Voigt model of linear viscoelasticity to represent the stress-strain relation of the ECM. However, due to the multifaceted bio-physical nature of the ECM constituents, there are rheological aspects that cannot be effectively captured by this model and, therefore, depending on the type of biological tissue considered, other constitutive models of linear viscoelasticity may be better suited. In this work, we systematically assess the pattern formation potential of different stress-strain constitutive equations for the ECM within a mechanical model of pattern formation in biological tissues. The results obtained through linear stability analysis support the idea that constitutive equations capturing viscous flow and permanent set (Maxwell model, Jeffrey model) have a pattern formation potential much higher than the others (Kelvin-Voigt model, standard linear solid model), further confirmed by the results of our numerical simulations. Our findings suggest that further empirical work is required to acquire detailed quantitative information on the mechanical properties of components of the ECM in different biological tissues in order to furnish mechanochemical models of pattern formation with stress-strain constitutive equations for the ECM that provide a more faithful representation of the underlying tissue rheology.

q-bio.TO↗

arXiv2016

Structured Models of Cell Migration Incorporating Molecular Binding Processes

The dynamic interplay between collective cell movement and the various molecules involved in the accompanying cell signalling mechanisms plays a crucial role in many biological processes including normal tissue development and pathological scenarios such as wound healing and cancer. Information about the various structures embedded within these processes allows a detailed exploration of the binding of molecular species to cell-surface receptors within the evolving cell population. In this paper we establish a general spatio-temporal-structural framework that enables the description of molecular binding to cell membranes coupled with the cell population dynamics. We first provide a general theoretical description for this approach and then illustrate it with two examples arising from cancer invasion.

q-bio.CB↗

arXiv2006

Zero-Preserving Iso-spectral Flows Based on Parallel Sums

Driessel ["Computing canonical forms using flows", Linear Algebra and Its Applications 2004] introduced the notion of quasi-projection onto the range of a linear transformation from one inner product space into another inner product space. Here we introduce the notion of quasi-projection onto the intersection of the ranges of two linear transformations from two inner product spaces into a third inner product space. As an application, we design a new family of iso-spectral flows on the space of symmetric matrices that preserves zero patterns. We discuss the equilibrium points of these flows. We conjecture that these flows generically converge to diagonal matrices. We perform some numerical experiments with these flows which support this conjecture. We also compare our zero preserving flows with the Toda flow.

math.GM↗