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Amartya S. Banerjee

Publications and source records attributed to Amartya S. Banerjee.

At least 19 recordsLinked to original sources
arXiv2026

Surprisingly High Redundancy in Electronic Structure Data Across Materials Explained by Low Intrinsic Dimensionality

Machine learning (ML) models for electronic structure typically rely on large datasets generated by computationally expensive Kohn-Sham density functional theory calculations, as it is not known a priori which portions of the data are essential for accurate learning. Here, we reveal significant redundancies in electronic structure datasets across diverse material systems and attribute them to the low intrinsic dimensionality of the underlying data. We show that even random pruning can substantially reduce dataset size with minimal degradation in predictive accuracy. Moreover, a state-of-the-art coverage-based pruning strategy that samples data across all learning difficulties almost always preserves chemical accuracy and maintains model generalizability while using up to two orders of magnitude less data and reducing training time by a factor of three or more. We further demonstrate that the essential electronic structure information lies on a low-dimensional, non-linear manifold, providing a potential geometric explanation for the observed prunability. These observations are consistent with the predominance of local atomic environments in determining electronic properties, as suggested by nearsightedness arguments, and indicate that large-scale datasets may contain highly overlapping information. Our findings challenge the prevailing assumption that such extensive datasets are necessary for accurate ML-based electronic structure predictions and open a path toward identifying minimal, representative datasets for each material class.

cond-mat.mtrl-sci↗
arXiv2026

Strain-controlled crystalline--amorphous transition and flat-band tuning in buckled silicon kagome

Electronic flat bands in an elemental two-dimensional material provide an attractive setting for electron interactions competing with suppressed kinetic energy. Here we propose a buckled silicon kagome lattice (SiKL), an unfunctionalized six-atom monolayer of bond-linked Si$_3$ triangles and dodecagonal pores. Its planar parent hosts a dispersionless Kohn--Sham band near the Fermi level but is unstable to out-of-plane distortions. Following three soft zone-centre phonons and relaxing displaced structures yields two nearly degenerate buckled forms. The high-buckling form retains a partially flat kagome-derived band near the Fermi level. Biaxial tension controls lattice dynamics and electronic dispersion: at 10% strain, the bandwidth decreases significantly, the density-of-states peak approaches the Fermi level, and the softest phonon hardens. At 315 K, $6\times6$ ab initio MD shows the unstrained network disordering while the strained network remains ordered, indicating finite-temperature metastability. Fifty-nanosecond classical MD of $36\times36$ sheets reveals a strain-controlled crystalline--amorphous transition and local-bonding crossover near 2% strain. Low-strain trajectories show gradual, two-stage disordering; higher strains undergo an abrupt, first-order-like collapse, with the transition temperature reaching approximately 600 K at 10% strain. An exploratory Ag(111) substrate model suggests epitaxial mismatch could supply comparable tension, retain a narrow SiKL band, and preserve crystalline order above room temperature. Unlike passivated or hybrid-lattice silicon kagome proposals aimed mainly at conventional semiconductors, SiKL is elemental and uses strain alone to couple thermal metastability, bond rearrangement, and near-Fermi flat-band tuning. Buckled SiKL is a candidate platform for strain-controlled flat-band and electronic correlation physics.

cond-mat.mtrl-sci↗
arXiv2026

Dirac Fermions and Flat Bands in Phosphorus Carbide Nanotubes: Structural and Quantum Phase Transitions in a Quasi-One-Dimensional Material

Chemically realistic quasi-one-dimensional (1D) materials in which Dirac fermions and highly degenerate flat bands coexist intrinsically at the Fermi level are exceedingly rare, while representing a highly desirable platform for correlated and topological quantum phenomena. Here, using specialized symmetry-adapted first-principles calculations we predict a new class of nanomaterials -- phosphorus carbide nanotubes ($\text{P}_2\text{C}_3$NTs) -- obtained by rolling monolayer $\text{P}_2\text{C}_3$, a two-dimensional material shown in a previous letter to host "double Kagome bands". Both armchair and zigzag $\text{P}_2\text{C}_3$NTs are stable at room temperature and feature the rare coexistence of Dirac crossings and multiple flat bands at the Fermi level inherited from the underlying honeycomb-Kagome lattice, with the flat bands resilient to elastic deformations. Under large strain, the structure transforms from honeycomb-Kagome to "brick-wall," accompanied by multiple coupled structural and quantum phase transitions. We also uncover localized edge states, spin splitting from vacancies and dopants, and strain-tunable magnetism. Together, these results establish $\text{P}_2\text{C}_3$NTs as a chemically specific and mechanically tunable 1D material platform with potential applications in quantum hardware and spintronics.

cond-mat.mtrl-sci↗
arXiv2026

Multiscale analysis of large twist ferroelectricity and swirling dislocations in bilayer hexagonal boron nitride

With its atomically thin structure and intrinsic ferroelectric properties, heterodeformed bilayer hexagonal boron nitride (hBN) has gained prominence in next-generation non-volatile memory applications. However, studies to date have focused almost exclusively on small$-$twist bilayer hBN, leaving the question of whether ferroelectricity can persist under small heterostrain and large heterodeformation entirely unexplored. In this work, we establish the crystallographic origin of ferroelectricity in bilayer hBN configurations heterodeformed relative to high-symmetry configurations such as the AA-stacking and the $21.786789^\circ$ twisted configuration ($Σ7$), using Smith normal form bicrystallography. We then demonstrate out-of-plane ferroelectricity in bilayer hBN across configurations vicinal to both the AA and $\Sigma7$ stackings. Atomistic simulations reveal that AA-vicinal systems support ferroelectricity under both small twist and small strain, with polarization switching in the latter governed by the deformation of swirling dislocations rather than the straight interface dislocations seen in the former. For $\Sigma7$-vicinal systems, where existing interatomic potentials underperform particularly under extreme out-of-plane compression, we develop a density-functional-theory-informed continuum framework-the bicrystallography-informed frame-invariant multiscale (BFIM) model, which captures out-of-plane ferroelectricity in heterodeformed configurations vicinal to the $Σ7$ stacking. Interface dislocations in these large heterodeformed bilayer configurations exhibit markedly smaller Burgers vectors compared to the interface dislocations in small-twist and small-strain bilayer hBN. The BFIM model reproduces experimental results and provides a powerful, computationally efficient framework for predicting ferroelectricity in large-unit-cell heterostructures.

cond-mat.mtrl-sci↗
arXiv2026

Electronic structure prediction of medium and high entropy alloys across composition space

We propose machine learning (ML) models to predict the electron density -- the fundamental unknown of a material's ground state -- across the composition space of concentrated alloys. From this, other physical properties can be inferred, enabling accelerated exploration. A significant challenge is that the number of sampled compositions and descriptors required to accurately predict fields like the electron density increases rapidly with species. To address this, we employ Bayesian Active Learning (AL), which minimizes training data requirements by leveraging uncertainty quantification capabilities of Bayesian Neural Networks. Compared to strategic tessellation of the composition space, Bayesian-AL reduces the number of training data points by a factor of 2.5 for ternary (SiGeSn) and 1.7 for quaternary (CrFeCoNi) systems. We also introduce easy-to-optimize, body-attached-frame descriptors, which respect physical symmetries and maintain approximately the same descriptor-vector size as alloy elements increase. Our ML models demonstrate high accuracy and generalizability in predicting both electron density and energy across composition space.

cond-mat.mtrl-sci↗
arXiv2025

Bloch Oscillations and Landau-Zener Transitions in Flat-Band Lattices with Quadratic and Linear Band Touchings

Bloch oscillations (BOs) describe the coherent oscillatory motion of electrons in a periodic lattice under a constant external electric field. Deviations from pure harmonic wave packet motion or irregular Bloch oscillations can occur due to Zener tunneling (Landau-Zener Transitions or LZTs), with oscillation frequencies closely tied to interband coupling strengths. Motivated by the interplay between flat-band physics and interband coupling in generating irregular BOs, here we investigate these oscillations in Lieb and Kagome lattices using two complementary approaches: coherent transport simulations and scattering matrix analysis. In the presence of unavoidable band touchings, half-fundamental and fundamental BO frequencies are observed in Lieb and Kagome lattices, respectively -- a behavior directly linked to their distinct band structures. When avoided band touchings are introduced, distinct BO frequency responses to coupling parameters in each lattice are observed. Scattering matrix analysis reveals strong coupling and potential LZTs between dispersive bands and the flat band in Kagome lattices, with the quadratic band touching enhancing interband interactions and resulting in BO dynamics that is distinct from systems with linear crossings. In contrast, the Lieb lattice -- a three level system -- shows independent coupling between the flat band and two dispersive bands, without direct LZTs occurring between the two dispersive bands themselves. Finally, to obtain a unifying perspective on these results, we examine BOs during a strain-induced transition from Kagome to Lieb lattices, and link the evolution of irregular BO frequencies to changes in band connectivity and interband coupling.

cond-mat.mtrl-sci↗
arXiv2025

Strain-Tunable Topological Phase Transitions in Line- and Split-Graph Flat-Band Lattices

In recent years, materials with topological flat bands have attracted significant attention due to their association with extraordinary transport properties and strongly correlated electrons. Yet, generic principles linking lattice architecture, strain, and band topology remain scarce. Here, using a unified graph-theoretic framework we generate entire families of two-dimensional lattices and, using analytical tight-binding calculations, demonstrate that a single mechanical knob -- uniform in-plane strain -- drives universal transitions between trivial insulating, Dirac semimetal, and quantum spin-Hall phases across all lattices. The framework yields several flat band lattices that were hitherto absent or largely unexplored in the literature -- for example, the checkerboard split-graph and triangular-Kagome lattices -- whose strain-driven topological phase diagrams we establish here for the first time. The design rules implied by our studies provide a blueprint for engineering topological states in a wide variety of 2D materials, photonic crystals, and circuit lattices, and are anticipated to accelerate the discovery of strain-programmable quantum matter.

cond-mat.str-el↗
arXiv2024

Electronic Structure Prediction of Multi-million Atom Systems Through Uncertainty Quantification Enabled Transfer Learning

The ground state electron density -- obtainable using Kohn-Sham Density Functional Theory (KS-DFT) simulations -- contains a wealth of material information, making its prediction via machine learning (ML) models attractive. However, the computational expense of KS-DFT scales cubically with system size which tends to stymie training data generation, making it difficult to develop quantifiably accurate ML models that are applicable across many scales and system configurations. Here, we address this fundamental challenge by employing transfer learning to leverage the multi-scale nature of the training data, while comprehensively sampling system configurations using thermalization. Our ML models are less reliant on heuristics, and being based on Bayesian neural networks, enable uncertainty quantification. We show that our models incur significantly lower data generation costs while allowing confident -- and when verifiable, accurate -- predictions for a wide variety of bulk systems well beyond training, including systems with defects, different alloy compositions, and at unprecedented, multi-million-atom scales. Moreover, such predictions can be carried out using only modest computational resources.

cond-mat.mtrl-sci↗
arXiv2023

Carbon Kagome Nanotubes -- quasi-one-dimensional nanostructures with flat bands

We introduce carbon Kagome nanotubes (CKNTs) -- a new allotrope of carbon formed by rolling up sheets of Kagome graphene, and investigate the properties of this material using first principles calculations. Based on the direction of rolling, we identify two principal varieties of CKNTs -- armchair and zigzag, and find that the bending stiffness associated with rolling Kagome graphene into either type of CKNT is about a third of that associated with rolling conventional graphene into carbon nanotubes (CNTs). Ab initio molecular dynamics simulations indicate that both types of CKNTs are likely to exist as stable structures at room temperature. Each CKNT explored here is metallic and features dispersionless states (i.e., flat bands) throughout its Brillouin zone, along with an associated singular peak in the electronic density of states, close to the Fermi level. We calculate the mechanical and electronic response of CKNTs to torsional and axial strains and compare against conventional CNTs. We show in particular, that upon twisting, degenerate dispersionless electronic states in CKNTs split, Dirac points and partially flat bands emerge from the quadratic band crossing point at the Fermi level, and that these features can be explained using a relatively simple tight-binding model. Overall, CKNTs appear to be unique and striking examples of realistic elemental quasi-one-dimensional (1D) materials that can potentially display fascinating collective material properties arising from the presence of strongly correlated electrons. Additionally, distorted CKNTs may provide an interesting material platform where flat band physics and chirality induced anomalous transport effects may be studied together.

cond-mat.mtrl-sci↗
arXiv2023

Solution of the Schrodinger equation for quasi-one-dimensional materials using helical waves

We formulate and implement a spectral method for solving the Schrodinger equation, as it applies to quasi-one-dimensional materials and structures. This allows for computation of the electronic structure of important technological materials such as nanotubes (of arbitrary chirality), nanowires, nanoribbons, chiral nanoassemblies, nanosprings and nanocoils, in an accurate, efficient and systematic manner. Our work is motivated by the observation that one of the most successful methods for carrying out electronic structure calculations of bulk/crystalline systems -- the plane-wave method -- is a spectral method based on eigenfunction expansion. Our scheme avoids computationally onerous approximations involving periodic supercells often employed in conventional plane-wave calculations of quasi-one-dimensional materials, and also overcomes several limitations of other discretization strategies, e.g., those based on finite differences and atomic orbitals. We describe the setup of fast transforms to carry out discretization of the governing equations using our basis set, and the use of matrix-free iterative diagonalization to obtain the electronic eigenstates. Miscellaneous computational details, including the choice of eigensolvers, use of a preconditioning scheme, evaluation of oscillatory radial integrals and the imposition of a kinetic energy cutoff are discussed. We have implemented these strategies into a computational package called HelicES (Helical Electronic Structure). We demonstrate the utility of our method in carrying out systematic electronic structure calculations of various quasi-one-dimensional materials through numerous examples involving nanotubes, nanoribbons and nanowires. We also explore the convergence, accuracy and efficiency of our method. We anticipate that our method will find numerous applications in computational nanomechanics and materials science.

physics.comp-ph↗
arXiv2023

Bicrystallography-informed Frenkel-Kontorova model for interlayer dislocations in strained 2D heterostructures

In recent years, van der Waals (vdW) heterostructures and homostructures, which consist of stacks of two-dimensional (2D) materials, have risen to prominence due to their association with exotic quantum phenomena. Atomistic scale relaxation effects play an extremely important role in the electronic scale quantum physics of these systems. We investigate such structural relaxation effects in this work using atomistic and mesoscale models, within the context of twisted bilayer graphene -- a well-known heterostructure system that features moire patterns arising from the lattices of the two graphene layers. For small twist angles, atomic relaxation effects in this system are associated with the natural emergence of interface dislocations or strain solitons, which result from the cyclic nature of the generalized stacking fault energy (GSFE), that measures the interface energy based on the relative movement of the two layers. In this work, we first demonstrate using atomistic simulations that atomic reconstruction in bilayer graphene under a large twist also results from interface dislocations, although the Burgers vectors of such dislocations are considerably smaller than those observed in small-twist systems. To reveal the translational invariance of the heterointerface responsible for the formation of such dislocations, we derive the translational symmetry of the GSFE of a 2D heterostructure using the notions of coincident site lattices (CSLs) and displacement shift complete lattices (DSCLs). The workhorse for this exercise is a recently developed Smith normal form bicrystallography framework. Next, we construct a bicrystallography-informed and frame-invariant Frenkel-Kontorova model, which can predict the formation of strain solitons in arbitrary 2D heterostructures, and apply it to study a heterostrained, large-twist bilayer graphene system.

cond-mat.mes-hall↗
arXiv2023

The Biological Qubit: Calcium Phosphate Dimers, not Trimers

The Posner molecule (calcium phosphate trimer), has been hypothesized to function as a biological quantum information processor due to its supposedly long-lived entangled $^{31}$P nuclear spin states. This hypothesis was challenged by our recent finding that the molecule lacks a well-defined rotational axis of symmetry -- an essential assumption in the proposal for Posner-mediated neural processing -- and exists as an asymmetric dynamical ensemble. Following up, we investigate here the spin dynamics of the molecule's entangled $^{31}$P nuclear spins within the asymmetric ensemble. Our simulations show that entanglement between two nuclear spins prepared in a Bell state in separate Posner molecules decays on a sub-second timescale -- much faster than previously hypothesized, and not long enough for super-cellular neuronal processing. Calcium phosphate dimers however, are found to be surprisingly resilient to decoherence and are able to preserve entangled nuclear spins for hundreds of seconds, suggesting that neural processing might occur through them instead.

quant-ph↗
arXiv2022

Machine learning based prediction of the electronic structure of quasi-one-dimensional materials under strain

We present a machine learning based model that can predict the electronic structure of quasi-one-dimensional materials while they are subjected to deformation modes such as torsion and extension/compression. The technique described here applies to important classes of materials such as nanotubes, nanoribbons, nanowires, miscellaneous chiral structures and nano-assemblies, for all of which, tuning the interplay of mechanical deformations and electronic fields is an active area of investigation in the literature. Our model incorporates global structural symmetries and atomic relaxation effects, benefits from the use of helical coordinates to specify the electronic fields, and makes use of a specialized data generation process that solves the symmetry-adapted equations of Kohn-Sham Density Functional Theory in these coordinates. Using armchair single wall carbon nanotubes as a prototypical example, we demonstrate the use of the model to predict the fields associated with the ground state electron density and the nuclear pseudocharges, when three parameters - namely, the radius of the nanotube, its axial stretch, and the twist per unit length - are specified as inputs. Other electronic properties of interest, including the ground state electronic free energy, can then be evaluated with low-overhead post-processing, typically to chemical accuracy. We also show how the nuclear coordinates can be reliably determined from the pseudocharge field using a clustering based technique. Remarkably, only about 120 data points are found to be enough to predict the three dimensional electronic fields accurately, which we ascribe to the symmetry in the problem setup, the use of low-discrepancy sequences for sampling, and presence of intrinsic low-dimensional features in the electronic fields. We comment on the interpretability of our machine learning model and discuss its possible future applications.

cond-mat.mtrl-sci↗
arXiv2022

Density functional theory method for twisted geometries with application to torsional deformations in group-IV nanotubes

We present a real-space formulation and implementation of Kohn-Sham Density Functional Theory suited to twisted geometries, and apply it to the study of torsional deformations of X (X = C, Si, Ge, Sn) nanotubes. Our formulation is based on higher order finite difference discretization in helical coordinates, uses ab intio pseudopotentials, and naturally incorporates rotational (cyclic) and screw operation (i.e., helical) symmetries. We discuss several aspects of the computational method, including the form of the governing equations, details of the numerical implementation, as well as its convergence, accuracy and efficiency properties. The technique presented here is particularly well suited to the first principles simulation of quasi-one-dimensional structures and their deformations, and many systems of interest can be investigated using small simulation cells containing just a few atoms. We apply the method to systematically study the properties of single-wall zigzag and armchair group-IV nanotubes, as they undergo twisting. For the range of deformations considered, the mechanical behavior of the tubes is found to be largely consistent with isotropic linear elasticity, with the torsional stiffness varying as the cube of the nanotube radius. Furthermore, for a given tube radius, this quantity is seen to be highest for carbon nanotubes and the lowest for those of tin, while nanotubes of silicon and germanium have intermediate values close to each other. We also describe different aspects of the variation in electronic properties of the nanotubes as they are twisted. In particular, we find that akin to the well known behavior of armchair carbon nanotubes, armchair nanotubes of silicon, germanium and tin also exhibit bandgaps that vary periodically with imposed rate of twist, and that the periodicity of the variation scales in an inverse quadratic manner with the tube radius.

cond-mat.mtrl-sci↗
arXiv2021

A Chirality-Based Quantum Leap

Chiral degrees of freedom occur in matter and in electromagnetic fields and constitute an area of research that is experiencing renewed interest driven by recent observations of the chiral-induced spin selectivity (CISS) effect in chiral molecules and engineered nanomaterials. The CISS effect underpins the fact that charge transport through nanoscopic chiral structures favors a particular electronic spin orientation, resulting in large room-temperature spin polarizations. Observations of the CISS effect suggest opportunities for spin control and for the design and fabrication of room-temperature quantum devices from the bottom up, with atomic-scale precision. Any technology that relies on optimal charge transport, including quantum devices for logic, sensing, and storage, may benefit from chiral quantum properties. These properties can be theoretically and experimentally investigated from a quantum information perspective, which is presently lacking. There are uncharted implications for the quantum sciences once chiral couplings can be engineered to control the storage, transduction, and manipulation of quantum information. This forward-looking perspective provides a survey of the experimental and theoretical fundamentals of chiral-influenced quantum effects, and presents a vision for their future roles in enabling room-temperature quantum technologies.

cond-mat.mes-hall↗
arXiv2021

The Dynamical Ensemble of the Posner Molecule is not Symmetric

The Posner molecule, $\text{Ca}_9(\text{PO}_4)_6$, has long been recognized to have biochemical relevance in various physiological processes. It has found recent attention for its possible role as a biological quantum information processor, whereby the molecule purportedly maintains long-lived nuclear spin coherences among its ${^{31}\text{P}}$ nuclei (presumed to be symmetrically arranged), allowing it to function as a room temperature qubit. The structure of the molecule has been of much dispute in the literature, although the $\text{S}_6$ point group symmetry has often been assumed and exploited in calculations. Using a variety of simulation techniques (including ab initio molecular dynamics and structural relaxation), rigorous data analysis tools and by exploring thousands of individual configurations, we establish that the molecule predominantly assumes low symmetry structures ($\text{C}_\text{s}$ and $\text{C}_\text{i}$) at room temperature, as opposed to the higher symmetry configurations explored previously. Our findings have important implications on the viability of this molecule as a qubit.

quant-ph↗
arXiv2021

Ab initio framework for systems with helical symmetry: theory, numerical implementation and applications to torsional deformations in nanostructures

We formulate and implement Helical DFT -- a self-consistent first principles simulation method for nanostructures with helical symmetries. Such materials are well represented in all of nanotechnology, chemistry and biology, and are expected to be associated with unprecedented material properties. We rigorously demonstrate the existence and completeness of special solutions to the single electron problem for helical nanostructures, called helical Bloch waves. We describe how the Kohn-Sham Density Functional Theory equations for a helical nanostructure can be reduced to a fundamental domain with the aid of these solutions. A key component in our mathematical treatment is the definition and use of a helical Bloch-Floquet transform to perform a block-diagonalization of the Hamiltonian in the sense of direct integrals. We develop a symmetry-adapted finite-difference strategy in helical coordinates to discretize the governing equations, and obtain a working realization of the proposed approach. We verify the accuracy and convergence properties of our numerical implementation through examples. Finally, we employ Helical DFT to study the properties of zigzag and chiral single wall black phosphorus (i.e., phosphorene) nanotubes. We use our simulations to evaluate the torsional stiffness of a zigzag nanotube ab initio. Additionally, we observe an insulator-to-metal-like transition in the electronic properties of this nanotube as it is subjected to twisting. We also find that a similar transition can be effected in chiral phosphorene nanotubes by means of axial strains. Notably, self-consistent ab initio simulations of this nature are unprecedented and well outside the scope of any other systematic first principles method in existence. We end with a discussion on various future avenues and applications.

physics.comp-ph↗
arXiv2019

Symmetry-adapted real-space density functional theory for cylindrical geometries: application to large X (X=C, Si, Ge, Sn) nanotubes

We present a symmetry-adapted real-space formulation of Kohn-Sham density functional theory for cylindrical geometries and apply it to the study of large X (X=C, Si, Ge, Sn) nanotubes. Specifically, starting from the Kohn-Sham equations posed on all of space, we reduce the problem to the fundamental domain by incorporating cyclic and periodic symmetries present in the angular and axial directions of the cylinder, respectively. We develop a high-order finite-difference parallel implementation of this formulation, and verify its accuracy against established planewave and real-space codes. Using this implementation, we study the band structure and bending properties of X nanotubes and Xene sheets, respectively. Specifically, we first show that zigzag and armchair X nanotubes with radii in the range 1 to 5 nm are semiconducting. In particular, we find an inverse linear dependence of the bandgap with respect to the radius for all nanotubes, other than the armchair and zigzag type III carbon variants, for which we find an inverse quadratic dependence. Next, we exploit the connection between cyclic symmetry and uniform bending deformations to calculate the bending moduli of Xene sheets in both zigzag and armchair directions. We find Kirchhoff-Love type bending behavior for all sheets, with graphene and stanene possessing the largest and smallest moduli, respectively. In addition, other than graphene, the sheets demonstrate significant anisotropy, with larger bending moduli along the armchair direction. Finally, we demonstrate that the proposed approach has very good parallel scaling and is highly efficient, enabling ab initio simulations of unprecedented size for systems with a high degree of cyclic symmetry. In particular, we show that even micron-sized nanotubes can be simulated with modest computational effort.

cond-mat.mes-hall↗