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Ashwani Jha

Publications and source records attributed to Ashwani Jha.

6 recordsLinked to original sources

Individualized prescriptive inference in ischaemic stroke

The gold standard in the treatment of ischaemic stroke is set by evidence from randomized controlled trials, based on simple descriptions of presumptively homogeneous populations. Yet the manifest complexity of the brain's functional, connective, and vascular architectures introduces heterogeneities that violate the underlying statistical premisses, potentially leading to substantial errors at both individual and population levels. The counterfactual nature of interventional inference renders quantifying the impact of this defect difficult. Here we conduct a comprehensive series of semi-synthetic, biologically plausible, virtual interventional trials across 100M+ distinct simulations. We generate empirically grounded virtual trial data from large-scale meta-analytic connective, functional, genetic expression, and receptor distribution data, with high-resolution maps of 4K+ acute ischaemic lesions. Within each trial, we estimate treatment effects using models varying in complexity, in the presence of increasingly confounded outcomes and noisy treatment responses. Individualized prescriptions inferred from simple models, fitted to unconfounded data, were less accurate than those from complex models, fitted to confounded data. Our results indicate that complex modelling with richly represented lesion data is critical to individualized prescriptive inference in ischaemic stroke.

q-bio.QM

Neuradicon: operational representation learning of neuroimaging reports

Radiological reports typically summarize the content and interpretation of imaging studies in unstructured form that precludes quantitative analysis. This limits the monitoring of radiological services to throughput undifferentiated by content, impeding specific, targeted operational optimization. Here we present Neuradicon, a natural language processing (NLP) framework for quantitative analysis of neuroradiological reports. Our framework is a hybrid of rule-based and artificial intelligence models to represent neurological reports in succinct, quantitative form optimally suited to operational guidance. We demonstrate the application of Neuradicon to operational phenotyping of a corpus of 336,569 reports, and report excellent generalizability across time and two independent healthcare institutions.

cs.CL

Focal and Connectomic Mapping of Transiently Disrupted Brain Function

The distributed nature of the neural substrate, and the difficulty of establishing necessity from correlative data, combine to render the mapping of brain function a far harder task than it seems. Methods capable of combining connective anatomical information with focal disruption of function are needed to disambiguate local from global neural dependence, and critical from merely coincidental activity. Here we present a comprehensive framework for focal and connective spatial inference based on sparse disruptive data, and demonstrate its application in the context of transient direct electrical stimulation of the human medial frontal wall during the pre-surgical evaluation of patients with focal epilepsy. Our framework formalizes voxel-wise mass-univariate inference on sparsely sampled data within the statistical parametric mapping framework, encompassing the analysis of distributed maps defined by any criterion of connectivity. Applied to the medial frontal wall, this transient dysconnectome approach reveals marked discrepancies between local and distributed associations of major categories of motor and sensory behaviour, revealing differentiation by remote connectivity to which purely local analysis is blind. Our framework enables disruptive mapping of the human brain based on sparsely sampled data with minimal spatial assumptions, good statistical efficiency, flexible model formulation, and explicit comparison of local and distributed effects.

q-bio.NC

Hierarchical Graph-Convolutional Variational AutoEncoding for Generative Modelling of Human Motion

Models of human motion commonly focus either on trajectory prediction or action classification but rarely both. The marked heterogeneity and intricate compositionality of human motion render each task vulnerable to the data degradation and distributional shift common to real-world scenarios. A sufficiently expressive generative model of action could in theory enable data conditioning and distributional resilience within a unified framework applicable to both tasks. Here we propose a novel architecture based on hierarchical variational autoencoders and deep graph convolutional neural networks for generating a holistic model of action over multiple time-scales. We show this Hierarchical Graph-convolutional Variational Autoencoder (HG-VAE) to be capable of generating coherent actions, detecting out-of-distribution data, and imputing missing data by gradient ascent on the model's posterior. Trained and evaluated on H3.6M and the largest collection of open source human motion data, AMASS, we show HG-VAE can facilitate downstream discriminative learning better than baseline models.

cs.CV

GeoSPM: Geostatistical parametric mapping for medicine

The characteristics and determinants of health and disease are often organised in space, reflecting our spatially extended nature. Understanding the influence of such factors requires models capable of capturing spatial relations. Though a mature discipline, spatial analysis is comparatively rare in medicine, arguably a consequence of the complexity of the domain and the inclemency of the data regimes that govern it. Drawing on statistical parametric mapping, a framework for topological inference well-established in the realm of neuroimaging, we propose and validate a novel approach to the spatial analysis of diverse clinical data - GeoSPM - based on differential geometry and random field theory. We evaluate GeoSPM across an extensive array of synthetic simulations encompassing diverse spatial relationships, sampling, and corruption by noise, and demonstrate its application on large-scale data from UK Biobank. GeoSPM is transparently interpretable, can be implemented with ease by non-specialists, enables flexible modelling of complex spatial relations, exhibits robustness to noise and under-sampling, offers well-founded criteria of statistical significance, and is through computational efficiency readily scalable to large datasets. We provide a complete, open-source software implementation of GeoSPM, and suggest that its adoption could catalyse the wider use of spatial analysis across the many aspects of medicine that urgently demand it.

stat.ME

Generative Model-Enhanced Human Motion Prediction

The task of predicting human motion is complicated by the natural heterogeneity and compositionality of actions, necessitating robustness to distributional shifts as far as out-of-distribution (OoD). Here we formulate a new OoD benchmark based on the Human3.6M and CMU motion capture datasets, and introduce a hybrid framework for hardening discriminative architectures to OoD failure by augmenting them with a generative model. When applied to current state-of-the-art discriminative models, we show that the proposed approach improves OoD robustness without sacrificing in-distribution performance, and can theoretically facilitate model interpretability. We suggest human motion predictors ought to be constructed with OoD challenges in mind, and provide an extensible general framework for hardening diverse discriminative architectures to extreme distributional shift. The code is available at https://github.com/bouracha/OoDMotion.

cs.CV