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Benjamin Ivorra

Publications and source records attributed to Benjamin Ivorra.

4 recordsLinked to original sources

Identifiability and Observability Analysis for Epidemiological Models: Insights on the SIRS Model

The problems of observability and identifiability have been of great interest as previous steps to estimating parameters and initial conditions of dynamical systems to which some known data (observations) are associated. While most works focus on linear and polynomial/rational systems of ODEs, general nonlinear systems have received far less attention and, to the best of our knowledge, no general constructive methodology has been proposed to assess and guarantee parameter and state recoverability in this context. We consider a class of systems of parameterized nonlinear ODEs and some observations, and study if a system of this class is observable, identifiable or jointly observable-identifiable; our goal is to identify its parameters and/or reconstruct the initial condition from the data. To achieve this, we introduce a family of efficient and fully constructive procedures that allow recoverability of the unknowns with low computational cost and address the aforementioned gap. Each procedure is tailored to different observational scenarios and based on the resolution of linear systems. As a case study, we apply these procedures to several epidemic models, with a detailed focus on the SIRS model, demonstrating its joined observability-identifiability when only a portion of the infected individuals is measured, a scenario that has not been studied before. In contrast, for the same observations, the SIR model is observable and identifiable, but not jointly observable-identifiable. This distinction allows us to introduce a novel approach to discriminating between different epidemiological models (SIR vs. SIRS) from short-time data. For these two models, we illustrate the theoretical results through some numerical experiments, validating the approach and highlighting its practical applicability to real-world scenarios.

math.DS

About identifiability and observability for a class of dynamical systems

In this note, we propose a novel approach for a class of autonomous dynamical systems that allows, given some observations of the solutions, to identify its parameters and reconstruct the state vector. This approach relies on proving the linear independence between some functions depending on the observations and its derivatives. In particular, we show that, in some cases, only low-order derivatives are necessary, opposed to classical approaches that need more derivation. We also provide different constructive procedures to retrieve the unknowns, which are based on the resolution of some linear systems. Moreover, under some analytic conditions, these unknowns may be retrieved with very few data. We finally apply this approach to some illustrative examples.

math.DS

Be-CoDiS: A mathematical model to predict the risk of human diseases spread between countries. Validation and application to the 2014-15 Ebola Virus Disease epidemic

Ebola virus disease is a lethal human and primate disease that currently requires a particular attention from the international health authorities due to important outbreaks in some Western African countries and isolated cases in the United Kingdom, the USA and Spain. Regarding the emergency of this situation, there is a need of development of decision tools, such as mathematical models, to assist the authorities to focus their efforts in important factors to eradicate Ebola. In this work, we propose a novel deterministic spatial-temporal model, called Be-CoDiS (Between-Countries Disease Spread), to study the evolution of human diseases within and between countries. The main interesting characteristics of Be-CoDiS are the consideration of the movement of people between countries, the control measure effects and the use of time dependent coefficients adapted to each country. First, we focus on the mathematical formulation of each component of the model and explain how its parameters and inputs are obtained. Then, in order to validate our approach, we consider two numerical experiments regarding the 2014-15 Ebola epidemic. The first one studies the ability of the model in predicting the EVD evolution between countries starting from the index cases in Guinea in December 2013. The second one consists of forecasting the evolution of the epidemic by using some recent data. The results obtained with Be-CoDiS are compared to real data and other models outputs found in the literature. Finally, a brief parameter sensitivity analysis is done. A free Matlab version of Be-CoDiS is available at: http://www.mat.ucm.es/momat/software.htm

q-bio.PE

Sensitivity analysis and study of the mixing uniformity of a microfluidic mixer

We consider a microfluidic mixer based on hydrodynamic focusing, which is used to initiate the folding process of individual proteins. The folding process is initiated by quickly diluting a local denaturant concentration, and we define mixing time as the time advecting proteins experience a specified to achieve a local drop in denaturant concentration. In previous work, we presented a minimization of mixing time which considered optimal geometry and flow conditions, and achieved a design with a predicted mixing time of 0.10 $μ$s. The aim of the current paper is twofold. First, we explore the sensitivity of mixing time to key geometric and flow parameters. In particular, we study the angle between inlets, the shape of the channel intersections, channel widths, mixer depth, mixer symmetry, inlet velocities, working fluid physical properties, and denaturant concentration thresholds. Second, we analyze the uniformity of mixing times as a function of inlet flow streamlines. We find the shape of the intersection, channel width, inlet velocity ratio, and asymmetries have strong effects on mixing time; while inlet angles, mixer depth, fluid properties, and concentration thresholds have weaker effects. Also, the uniformity of the mixing time is preserved for most of the inlet flow and distances of down to within about 0.4 $μ$m of the mixer wall. We offer these analyses of sensitivities to imperfections in mixer geometry and flow conditions as a guide to experimental efforts which aim to fabricate and use these types of mixers. Our study also highlights key issues and provides a guide to the optimization and practical design of other microfluidic devices dependent on both geometry and flow conditions.

physics.flu-dyn