arXiv subjects

Brett A. McGuire

Publications and source records attributed to Brett A. McGuire.

At least 19 recordsLinked to original sources

arXiv2026

Complex Organic Molecules in Protostars with ALMA Spectral Surveys (COMPASS) VI. Discovery of a class I methanol maser transition and its association with acetaldehyde

CH3OH masers that are collisionally pumped, referred to as `class I', commonly trace shock interfaces in star-forming regions, but their incidence in low-mass protostars remains poorly quantified. We use data from the COMPASS ALMA Large Program to establish the occurrence, spatial origin, and excitation of a newly detected class I CH3OH maser at 302.9 GHz towards low-mass protostars and to test whether its pumping environments exhibit signatures of shock-driven complex chemistry. COMPASS provides unbiased line surveys of 11 sources between 279.0 and 311.7 GHz at typical angular resolutions of 0.3"-0.5". Rotation diagram analysis of departures from LTE in the 302.9 GHz CH3OH excitation robustly reveals masing in seven of 11 sources, with peak brightness temperatures from a few to ~10^3 K. The brightest detection is towards HOPS 108 and is likely associated with the powerful outflow from the nearby intermediate-mass protostar HOPS 370. Excluding this case, the maser is detected in six of ten low-mass protostars (60%). All six are Class 0 sources interacting with dense ambient material, whereas the non-detections comprise three Class I sources and one isolated Class 0 core, indicating a preference for early evolutionary stages and gas-rich environments for outflow-ambient medium interactions. The maser emission is spatially coincident with thermal CH3OH along outflow cavity walls and bow shocks, but is more compact and knot-like. Among the surveyed COMs, only CH3CHO closely traces the shocked morphology of the 302.9 GHz maser, and only around HOPS 108. These results show that class I CH3OH masers in low-mass protostellar systems are more prevalent than previously recognised and preferentially occur in younger, more embedded sources. More sensitive CH3CHO observations are needed to test whether a similar relationship with shock-driven chemistry also applies in the low-mass regime.

astro-ph.GA↗

arXiv2026

Complex Organic Molecules in Protostars with ALMA Spectral Surveys (COMPASS) II. Approach to data reduction and products for line-rich broadband (sub)millimeter spectra

Studying the chemical composition of the warm gas surrounding embedded solar-type protostars is one of the areas for which the Atacama Large Millimeter/submillimeter Array (ALMA) is particularly well suited. Recently, the ALMA Large Program ``Complex Organic Molecules in Protostars with ALMA Spectral Surveys'' (COMPASS) carried out an observing campaign of a sample of 11 protostellar regions to investigate the chemical impact of their environments and evolutionary stages. The aim of this paper is to provide the observational and procedural information necessary for the community to understand the analysis presented in forthcoming scientific papers by the COMPASS collaboration, and to enable archival research using the data products provided by our team and the ALMA Science Archive. This paper describes the technical setup of the observations, and it outlines the data-processing pipeline and primary data products from this initiative. The Common Astronomy Software Applications (CASA) was used for initial calibration following the standard ALMA Pipeline, and then IMAGER was used for self-calibration and imaging. We describe post-processing done with Python to achieve favorable continuum subtraction, correct for the primary beam response, and extract spectra. We discuss our strategy for mitigating data challenges, including those related to data volume and continuum subtraction for spectral line analysis. The incorporation of IMAGER in our workflow was advantageous in terms of the computing efficiency which allowed us to benchmark several imaging parameters and techniques; we also demonstrate that the imaging outcomes using IMAGER or CASA are scientifically comparable. Numerous data products are generated for the program, including image cubes for the 36 spectral windows targeting each source, extracted spectra, and continuum images.

astro-ph.SR↗

arXiv2026

Automated Assignment and Prediction of Molecules in Astronomical Line Surveys Using Machine-Learning-Based Chemical Embeddings

Modern radio telescopes generate vast amounts of observational data, offering valuable insights into the molecular composition of interstellar sources. Identifying the molecules within these datasets typically involves time-consuming and labor-intensive manual analysis. This paper presents an automated method for assigning molecules in interstellar line surveys. The algorithm operates in two main stages. First, it automatically determines key parameters of the data, including excitation temperature, line width, and source velocity. Next, it assigns the observed spectral peaks by evaluating the spectroscopic match of the molecular candidates along with analyzing their chemical relevance to the interstellar source. The chemical relevance is determined by leveraging machine-learning-based molecular embedding techniques to analyze the regions of chemical space occupied by the observed species. Following the line assignment, this information is then used to generate new molecular candidates that occupy the same regions of chemical space. These newly generated species serve as promising targets for further investigation in the observational data. The algorithm was validated on spectral line surveys of the dark molecular cloud TMC-1 and the star-forming region IRAS 16293-2422B. In both cases, it identified at least 67 molecular species, accounting for over 90 percent of the analyzed line intensity, in 17 minutes or less while maintaining a high level of accuracy.

astro-ph.GA↗

arXiv2026

Exploring the Limits of Spectral Line Stacking in Spectral Line Data and Application Toward the Detection of Bulk $^{13}$C Enrichment of Aromatics in TMC-1

The formation history of polycyclic aromatic hydrocarbons (PAHs) in the interstellar medium remains a topic of active debate, with proposed mechanisms ranging from high-temperature stellar ejecta processes to low-temperature chemistry within molecular clouds. Recently, the identification of small PAHs in the cold, dark cloud TMC-1 has provided some circumstantial evidence of the latter. If these are formed in situ, their isotopic ratios, particularly $^{12}$C/$^{13}$C, should reflect the local, bulk material of the molecular cloud; in contrast, PAHs formed in the circumstellar envelopes of evolved stars may show enhanced $^{13}$C abundances. The expected radio signals of these $^{13}$C substituted species will be faint, and thus we conducted a detailed proof-of-concept analysis examining whether spectral line stacking and matched filtering techniques can robustly retrieve signal from multiple singly substituted $^{13}$C isotopologues in aggregate. We find that while retrieved signal decreases in the limit of spectral line confusion, false-positive detections are exceedingly improbable at the adopted 5$σ$ matched filter response detection threshold. We then demonstrate the technique on actual observational data of isotopologues of HC$_9$N toward TMC-1. Finally, we show using synthetic data that if laboratory rotational spectra of all singly substituted $^{13}$C isotopologues of cyanonaphthalene and cyanopyrene isomers existed, current observations of TMC-1 would be sensitive enough to discriminate between a local, bulk $^{12}$C/$^{13}$C ratio and one with an enhanced $^{13}$C abundance suggestive of inheritance.

astro-ph.GA↗

arXiv2026

Detection of the Polycyclic Aromatic Hydrocarbon Phenalene (C$_{13}$H$_{10}$) in the Very Low Luminosity Object (VeLLO) MC27/L1521F

To date, 14 polycyclic aromatic hydrocarbons (PAHs) ranging in size from two to seven (including five- and six-membered) carbon rings have been detected in the starless dense core TMC-1 CP within the Taurus molecular cloud. Their detection raises questions about the distribution of PAHs in the cold interstellar medium (ISM) and their evolution during star formation. Here, we present the first interstellar detection of a three-ring PAH outside of TMC-1 CP. We detect phenalene (C$_{13}$H$_{10}$), a compact, peri-fused PAH, in the dense core MC27/L1521F, a molecular cloud in Taurus containing a very low-luminosity object (VeLLO). We compare the abundances of phenalene in the two sources with respect to the single-ring aromatic benzonitrile, and find that it is enhanced by a factor of four in MC27/L1521F. We discuss the implications for possible formation and destruction pathways in the two sources. These findings further support the widespread abundance of PAHs throughout the cold ISM and are consistent with survival, inheritance, or replenishment during the earliest stages of star formation.

astro-ph.GA↗

arXiv2026

Modeling the Effect of C/O Ratio on Complex Carbon Chemistry in Cold Molecular Clouds

Elemental abundances, which are often depleted with respect to the solar values, are important input parameters for kinetic models of interstellar chemistry. In particular, the amount of carbon relative to oxygen is known to have a strong effect on modeled abundances of many species. While previous studies have focused on comparison of modeled and observed abundances to constrain the C/O ratio, the effects of this parameter on the underlying chemistry have not been well-studied. We investigated the role of the C/O ratio on dark cloud chemistry using the NAUTILUS code and machine learning techniques for molecular representation. We find that modeled abundances are quite sensitive to the C/O ratio, especially for carbon-rich species such as carbon chains and polycyclic aromatic hydrocarbons (PAHs). CO and simple ice-phase species are found to be major carbon reservoirs under both oxygen-poor and oxygen-rich conditions. The appearance of C3H4 isomers as significant carbon reservoirs, even under oxygen-rich conditions, indicates the efficiency of gas-phase C3 formation followed by adsorption and grain-surface hydrogenation. Our model is not able to reproduce the observed, gas-phase C/H ratio of TMC-1 CP at the time of best fit with any C/O ratio between 0.1 and 3, suggesting that the modeled freeze-out of carbon-bearing molecules may be too rapid. Future investigations are needed to understand the reactivity of major carbon reservoirs and their conversion to complex organic molecules.

astro-ph.GA↗

arXiv2025

Rotational Spectra and Search for Aromatic Imines: 9-Iminofluorene and Benzophenone imine

Interstellar detections of several cyano derivatives of large polycyclic aromatic hydrocarbons (PAHs) have now been achieved, enabled by accurate laboratory measurements of their microwave rotational spectra. These results highlight the continued promise of other N-containing unsaturated PAHs, such as aromatic imines, as candidates for future laboratory studies and astronomical searches. In this work, we present broadband spectroscopic measurements of 9-iminofluorene and benzophenone imine in the 6-18\,GHz band. These measurements yield accurate rotational, centrifugal distortion, and $^{14}$N quadrupole coupling constants for both molecules. Using these experimentally-derived constants, we attempted a search for both molecules in the cold molecular cloud TMC-1 using observations from the Green Bank Telescope (GBT). Neither of these two ketimines was detected above the current noise level, establishing upper limits for their column densities of $5.1\times10^{12}\,\text{cm}^{-2}$ for 9-iminofluorene and $1.3\times10^{13}\,\text{cm}^{-2}$ for benzophenone imine. We also attempted a search for phenylmethanimine (both E/Z isomers) as the simplest aromatic aldimine, but neither was detected in TMC-1. To provide insight into these non-detections, we propose and evaluate different formation pathways using respective potential energy surfaces as determined by high-precision quantum chemical calculations. The result suggests the presence of an entrance barrier to forming the intermediate species, potentially explaining the low abundance.

astro-ph.GA↗

arXiv2025

The Molecular Inventory of TMC-1 with GOTHAM Observations

Spectral line surveys of the Taurus Molecular Cloud-1 (TMC-1) have led to the detection of more than 100 new molecular species, making it the most prolific source of interstellar molecular discoveries. These wide-band, high-sensitivity line surveys have been enabled by advances in telescope and receiver technology, particularly at centimeter and millimeter wavelengths. In this work, we present a statistical analysis of the molecular inventory of TMC-1 as probed by the GOTHAM large program survey from 3.9 to 36.4 GHz. To fully unlock the potential of the $\sim$29 GHz spectral bandwidth, we developed an automated pipeline for data reduction and calibration. We applied a Bayesian approach with Markov-Chain Monte Carlo fitting to the calibrated spectra and constrained column densities for 102 molecular species detected in TMC-1, including 75 main isotopic species, 20 carbon-13 substituted species, and seven deuterium-substituted species. This list of the detected gas-phase molecules is populated by unsaturated hydrocarbons, in stark contrast to the oxygen-rich organics found in sublimated ices around protostars. Of note, ten individual aromatic molecules were identified in the GOTHAM observations, contributing 0.011% of the gas-phase carbon budget probed by detected molecules when including CO and 6% when excluding CO. This work provides a reference set of observed gas-phase molecular abundances for interstellar clouds, offering a new benchmark for astrochemical theoretical models.

astro-ph.GA↗

arXiv2025

Rotational Spectroscopy and Tentative Interstellar Detection of 3-Hydroxypropanal (HOCH$_2$CH$_2$CHO) in the G+0.693-0.027 Molecular Cloud

We synthesized the astrochemically relevant molecule 3-hydroxypropanal (HOCH$_2$CH$_2$CHO) and subsequently measured and analyzed its rotational spectrum in several frequency regions ranging from 130 to 485 GHz. We analyzed the ground vibrational state as well as the two perturbed lowest-lying vibrationally excited states. With the resulting rotational parameters, we searched for this molecule in the Sagittarius B2(N) and NGC 6334I hot cores, the IRAS 16293-2422B hot corino, and the G+0.693-0.027 and TMC-1 molecular clouds. Rotational emission of 3-hydroxypropanal was tentatively detected toward G+0.693-0.027 and a column density of (8.6$\pm$1.4)$\times$10$^{12}$ cm$^{-2}$ was determined. However, this molecule was not detected in the other sources that were investigated. The chemical implications of this tentative discovery are analyzed and several potential chemical formation pathways of this species are discussed.

astro-ph.GA↗

arXiv2025

A Machine Learning Pipeline for Molecular Property Prediction using ChemXploreML

We present ChemXploreML, a modular desktop application designed for machine learning-based molecular property prediction. The framework's flexible architecture allows integration of any molecular embedding technique with modern machine learning algorithms, enabling researchers to customize their prediction pipelines without extensive programming expertise. To demonstrate the framework's capabilities, we implement and evaluate two molecular embedding approaches - Mol2Vec and VICGAE (Variance-Invariance-Covariance regularized GRU Auto-Encoder) - combined with state-of-the-art tree-based ensemble methods (Gradient Boosting Regression, XGBoost, CatBoost, and LightGBM). Using five fundamental molecular properties as test cases - melting point (MP), boiling point (BP), vapor pressure (VP), critical temperature (CT), and critical pressure (CP) - we validate our framework on a dataset from the CRC Handbook of Chemistry and Physics. The models achieve excellent performance for well-distributed properties, with R$^2$ values up to 0.93 for critical temperature predictions. Notably, while Mol2Vec embeddings (300 dimensions) delivered slightly higher accuracy, VICGAE embeddings (32 dimensions) exhibited comparable performance yet offered significantly improved computational efficiency. ChemXploreML's modular design facilitates easy integration of new embedding techniques and machine learning algorithms, providing a flexible platform for customized property prediction tasks. The application automates chemical data preprocessing (including UMAP-based exploration of molecular space), model optimization, and performance analysis through an intuitive interface, making sophisticated machine learning techniques accessible while maintaining extensibility for advanced cheminformatics users.

physics.chem-ph↗

arXiv2025

Laboratory rotational spectra of cyanocyclohexane and its siblings (1- and 4-cyanocyclohexene) using a compact CP-FTMW spectrometer for interstellar detection

Chirped-pulse Fourier transform microwave (CP-FTMW) spectroscopy is a versatile technique to record broadband gas-phase rotational spectra, enabling detailed investigations of molecular structure, dynamics, and hyperfine interactions. Here, we present the development and application of a CP-FTMW spectrometer operating in the 6.5-18 GHz frequency range, studying cyanocyclohexane, 1-cyanocyclohexene, and 4-cyanocyclohexene using a heated pulsed supersonic expansion source. The dynamic range, experimental resolution, and high sensitivity enable observation of multiple conformers, precise measurements of hyperfine splitting arising from nuclear quadrupole coupling due to the nitrogen atom in the cyano group, as well as the observation of singly $^{13}$C- and $^{15}$N-substituted isotopic isomers in natural abundance. Using the latter, precise structures for the molecules are derived. The accurate rotational spectra enabled a search for these species toward the dark, cold molecular cloud TMC-1; no signals are found, and we discuss the implications of derived upper limits on the interstellar chemistry of the cyanocyclohexane family.

astro-ph.GA↗

arXiv2025

Infrared Spectroscopy of Pentagon-Containing PAHs: Indenyl and Fluorenyl Anions and Indenyl Cation

Polycyclic aromatic hydrocarbon (PAH) ions are crucial intermediates in interstellar chemistry and may play a key role in the infrared emission features observed in space. Here, we investigate the infrared spectra of the indenyl (C$_9$H$_7^-$) and fluorenyl (C$_{13}$H$_9^-$) anions and the indenyl cation (C$_9$H$_7^+$) using infrared pre-dissociation (IRPD) spectroscopy. The experiments were performed in a cryogenic 22 pole ion trap at the FELion beamline of the tunable free-electron laser FELIX. Spectral analysis of the two anionic PAHs, in combination with density functional theory (DFT) computations, revealed key vibrational modes near 1300 cm$^{-1}$, making these ions potential carriers of the 7.7 μm PAH emission band seen in many astronomical objects. The feature-rich spectrum of cationic indenyl could not be entirely explained by modeling through time-independent anharmonic DFT calculations. Although a better match has been achieved through molecular dynamics simulations, we cannot completely rule out the presence of multiple cationic isomers of the H-loss fragments of indene in the experiments.

astro-ph.GA↗

arXiv2025

Discovery of the 7-ring PAH Cyanocoronene (C$_{24}$H$_{11}$CN) in GOTHAM Observations of TMC-1

We present the synthesis and laboratory rotational spectroscopy of the 7-ring polycyclic aromatic hydrocarbon (PAH) cyanocoronene (C$_{24}$H$_{11}$CN) using a laser-ablation assisted cavity-enhanced Fourier transform microwave spectrometer. A total of 71 transitions were measured and assigned between 6.8--10.6\,GHz. Using these assignments, we searched for emission from cyanocoronene in the GBT Observations of TMC-1: Hunting Aromatic Molecules (GOTHAM) project observations of the cold dark molecular cloud TMC-1 using the 100\,m Green Bank Telescope (GBT). We detect a number of individually resolved transitions in ultrasensitive X-band observations and perform a Markov Chain Monte Carlo analysis to derive best-fit parameters, including a total column density of $N(\mathrm{C}_{24}\mathrm{H}_{11}\mathrm{CN}) = 2.69^{+0.26}_{-0.23} \times 10^{12}\,\mathrm{cm}^{-2}$ at a temperature of $6.05^{+0.38}_{-0.37}\,$K. A spectral stacking and matched filtering analysis provides a robust 17.3$\,σ$ significance to the overall detection. The derived column density is comparable to that of cyano-substituted naphthalene, acenaphthylene, and pyrene, defying the trend of decreasing abundance with increasing molecular size and complexity found for carbon chains. We discuss the implications of the detection for our understanding of interstellar PAH chemistry and highlight major open questions and next steps.

astro-ph.GA↗

arXiv2025

The Missing Link of Sulfur Chemistry in TMC-1: The Detection of c-C3H2S from the GOTHAM Survey

We present the spectroscopic characterization of cyclopropenethione (c-C3H2S) in the laboratory and detect it in space using the Green Bank Telescope (GBT) Observations of TMC-1: Hunting Aromatic Molecules (GOTHAM) survey. The detection of this molecule - the missing link in understanding the C3H2S isomeric family in TMC-1 - completes the detection of all 3 low-energy isomers of C3H2S as both CH2CCS and HCCCHS have been previously detected in this source. The total column density of this molecule (N_T of 5.72+2.65/-1.61x10^10 cm^-2 at an excitation temperature of 4.7+1.3/-1.1 K) is smaller than both CH2CCS and HCCCHS and follows nicely the relative dipole principle (RDP), a kinetic rule-of-thumb for predicting isomer abundances which suggests that, all other chemistry among a family of isomers being the same, the member with the smallest dipole should be the most abundant. The RDP now holds for the astronomical abundance ratios of both the S-bearing and O-bearing counterparts observed in TMC-1; however, CH2CCO continues to elude detection in any astronomical source.

astro-ph.GA↗

arXiv2024

Synthesis and Spectroscopic Characterization of Interstellar Candidate Ethynyl Thiocyanate: HCCSCN

This work aims to spectroscopically characterize and provide for the first time direct experimental frequencies of the ground vibrational state and two excited states of the simplest alkynyl thiocyanate (HCCSCN) for astrophysical use. Both microwave (8-16~GHz) and millimeter wave regions (50-120~GHz) of the spectrum have been measured and analyzed in terms of Watson's semirigid rotor Hamiltonian. A total of 314 transitions were assigned to the ground state of HCCSCN and a first set of spectroscopic constants have been accurately determined. Spectral features of the molecule were then searched for in Sgr B2(N), NGC 6334I, G+0.693-0.027 and TMC-1 molecular clouds. Upper limits to the column density are provided.

astro-ph.GA↗

arXiv2024

Sensitivity Analysis of Aromatic Chemistry to Gas-Phase Kinetics in a Dark Molecular Cloud Model

The increasingly large number of complex organic molecules detected in the interstellar medium necessitates robust kinetic models that can be relied upon for investigating the involved chemical processes. Such models require rate constants for each of the thousands of reactions; the values of these are often estimated or extrapolated, leading to large uncertainties that are rarely quantified. We have performed a global Monte Carlo and a more local one-at-a-time sensitivity analysis on the gas-phase rate coefficients in a 3-phase dark cloud model. Time-dependent sensitivities have been calculated using four metrics to determine key reactions for the overall network as well as for the cyanonaphthalene molecule in particular, an important interstellar species that is severely under-produced by current models. All four metrics find that reactions involving small, reactive species that initiate hydrocarbon growth have large effects on the overall network. Cyanonaphthalene is most sensitive to a number of these reactions as well as ring-formation of the phenyl cation (C6H5+) and aromatic growth from benzene to naphthalene. Future efforts should prioritize constraining rate coefficients of key reactions and expanding the network surrounding these processes. These results highlight the strength of sensitivity analysis techniques to identify critical processes in complex chemical networks, such as those often used in astrochemical modeling.

astro-ph.GA↗

arXiv2024

Discovery of interstellar 1-cyanopyrene: a four-ring polycyclic aromatic hydrocarbon in TMC-1

Polycyclic aromatic hydrocarbons (PAHs) are expected to be the most abundant class of organic molecules in space. Their interstellar lifecycle is not well understood, and progress is hampered by difficulties detecting individual PAH molecules. Here, we present the discovery of CN-functionalized pyrene, a 4-ring PAH, in the dense cloud TMC-1 using the 100-m Green Bank Telescope. We derive an abundance of 1-cyanopyrene of ~1.52 x $10^{12}$ cm$^{-2}$, and from this estimate that the un-substituted pyrene accounts for up to ~0.03-0.3% of the carbon budget in the dense interstellar medium which trace the birth sites of stars and planets. The presence of pyrene in this cold (~10 K) molecular cloud agrees with its recent measurement in asteroid Ryugu where isotopic clumping suggest a cold, interstellar origin. The direct link to the birth site of our solar system is strengthened when we consider the solid state pyrene content in the pre-stellar materials compared to comets, which represent the most pristine material in the solar system. We estimate that solid state pyrene can account for 1% of the carbon within comets carried by this one single organic molecule. The abundance indicates pyrene is an "island of stability" in interstellar PAH chemistry and suggests a potential cold molecular cloud origin of the carbon carried by PAHs that is supplied to forming planetary systems, including habitable worlds such as our own.

astro-ph.GA↗

arXiv2024

Detections of interstellar 2-cyanopyrene and 4-cyanopyrene in TMC-1

Polycyclic aromatic hydrocarbons (PAHs) are among the most ubiquitous compounds in the universe, accounting for up to ~25% of all interstellar carbon. Since most unsubstituted PAHs do not possess permanent dipole moments, they are invisible to radio astronomy. Constraining their abundances relies on the detection of polar chemical proxies, such as aromatic nitriles. We report the detection of 2- and 4-cyanopyrene, isomers of the recently detected 1-cyanopyrene. We find that these isomers are present in an abundance ratio of ~2:1:2, which mirrors the number of equivalent sites available for CN addition. We conclude that there is evidence that the cyanopyrene isomers formed by direct CN addition to pyrene under kinetic control in hydrogen-rich gas at 10 K and discuss constraints on the H/CN ratio for PAHs in TMC-1.

astro-ph.GA↗