arXiv subjects

Chandan K. Reddy

Publications and source records attributed to Chandan K. Reddy.

80 records · Page 5Linked to original sources

arXiv2020

Text-to-SQL Generation for Question Answering on Electronic Medical Records

Electronic medical records (EMR) contain comprehensive patient information and are typically stored in a relational database with multiple tables. Effective and efficient patient information retrieval from EMR data is a challenging task for medical experts. Question-to-SQL generation methods tackle this problem by first predicting the SQL query for a given question about a database, and then, executing the query on the database. However, most of the existing approaches have not been adapted to the healthcare domain due to a lack of healthcare Question-to-SQL dataset for learning models specific to this domain. In addition, wide use of the abbreviation of terminologies and possible typos in questions introduce additional challenges for accurately generating the corresponding SQL queries. In this paper, we tackle these challenges by developing a deep learning based TRanslate-Edit Model for Question-to-SQL (TREQS) generation, which adapts the widely used sequence-to-sequence model to directly generate the SQL query for a given question, and further performs the required edits using an attentive-copying mechanism and task-specific look-up tables. Based on the widely used publicly available electronic medical database, we create a new large-scale Question-SQL pair dataset, named MIMICSQL, in order to perform the Question-to-SQL generation task in healthcare domain. An extensive set of experiments are conducted to evaluate the performance of our proposed model on MIMICSQL. Both quantitative and qualitative experimental results indicate the flexibility and efficiency of our proposed method in predicting condition values and its robustness to random questions with abbreviations and typos.

cs.CL↗

arXiv2020

LATTE: Latent Type Modeling for Biomedical Entity Linking

Entity linking is the task of linking mentions of named entities in natural language text, to entities in a curated knowledge-base. This is of significant importance in the biomedical domain, where it could be used to semantically annotate a large volume of clinical records and biomedical literature, to standardized concepts described in an ontology such as Unified Medical Language System (UMLS). We observe that with precise type information, entity disambiguation becomes a straightforward task. However, fine-grained type information is usually not available in biomedical domain. Thus, we propose LATTE, a LATent Type Entity Linking model, that improves entity linking by modeling the latent fine-grained type information about mentions and entities. Unlike previous methods that perform entity linking directly between the mentions and the entities, LATTE jointly does entity disambiguation, and latent fine-grained type learning, without direct supervision. We evaluate our model on two biomedical datasets: MedMentions, a large scale public dataset annotated with UMLS concepts, and a de-identified corpus of dictated doctor's notes that has been annotated with ICD concepts. Extensive experimental evaluation shows our model achieves significant performance improvements over several state-of-the-art techniques.

cs.CL↗

arXiv2019

LeafNATS: An Open-Source Toolkit and Live Demo System for Neural Abstractive Text Summarization

Neural abstractive text summarization (NATS) has received a lot of attention in the past few years from both industry and academia. In this paper, we introduce an open-source toolkit, namely LeafNATS, for training and evaluation of different sequence-to-sequence based models for the NATS task, and for deploying the pre-trained models to real-world applications. The toolkit is modularized and extensible in addition to maintaining competitive performance in the NATS task. A live news blogging system has also been implemented to demonstrate how these models can aid blog/news editors by providing them suggestions of headlines and summaries of their articles.

cs.CL↗

arXiv2019

Deep Reinforcement Learning For Sequence to Sequence Models

In recent times, sequence-to-sequence (seq2seq) models have gained a lot of popularity and provide state-of-the-art performance in a wide variety of tasks such as machine translation, headline generation, text summarization, speech to text conversion, and image caption generation. The underlying framework for all these models is usually a deep neural network comprising an encoder and a decoder. Although simple encoder-decoder models produce competitive results, many researchers have proposed additional improvements over these sequence-to-sequence models, e.g., using an attention-based model over the input, pointer-generation models, and self-attention models. However, such seq2seq models suffer from two common problems: 1) exposure bias and 2) inconsistency between train/test measurement. Recently, a completely novel point of view has emerged in addressing these two problems in seq2seq models, leveraging methods from reinforcement learning (RL). In this survey, we consider seq2seq problems from the RL point of view and provide a formulation combining the power of RL methods in decision-making with sequence-to-sequence models that enable remembering long-term memories. We present some of the most recent frameworks that combine concepts from RL and deep neural networks and explain how these two areas could benefit from each other in solving complex seq2seq tasks. Our work aims to provide insights into some of the problems that inherently arise with current approaches and how we can address them with better RL models. We also provide the source code for implementing most of the RL models discussed in this paper to support the complex task of abstractive text summarization.

cs.LG↗

arXiv2019

Deep Transfer Reinforcement Learning for Text Summarization

Deep neural networks are data hungry models and thus face difficulties when attempting to train on small text datasets. Transfer learning is a potential solution but their effectiveness in the text domain is not as explored as in areas such as image analysis. In this paper, we study the problem of transfer learning for text summarization and discuss why existing state-of-the-art models fail to generalize well on other (unseen) datasets. We propose a reinforcement learning framework based on a self-critic policy gradient approach which achieves good generalization and state-of-the-art results on a variety of datasets. Through an extensive set of experiments, we also show the ability of our proposed framework to fine-tune the text summarization model using only a few training samples. To the best of our knowledge, this is the first work that studies transfer learning in text summarization and provides a generic solution that works well on unseen data.

cs.LG↗

arXiv2018

DyLink2Vec: Effective Feature Representation for Link Prediction in Dynamic Networks

The temporal dynamics of a complex system such as a social network or a communication network can be studied by understanding the patterns of link appearance and disappearance over time. A critical task along this understanding is to predict the link state of the network at a future time given a collection of link states at earlier time points. In existing literature, this task is known as link prediction in dynamic networks. Solving this task is more difficult than its counterpart in static networks because an effective feature representation of node-pair instances for the case of dynamic network is hard to obtain. To overcome this problem, we propose a novel method for metric embedding of node-pair instances of a dynamic network. The proposed method models the metric embedding task as an optimal coding problem where the objective is to minimize the reconstruction error, and it solves this optimization task using a gradient descent method. We validate the effectiveness of the learned feature representation by utilizing it for link prediction in various real-life dynamic networks. Specifically, we show that our proposed link prediction model, which uses the extracted feature representation for the training instances, outperforms several existing methods that use well-known link prediction features.

cs.SI↗

arXiv2017

Machine Learning for Survival Analysis: A Survey

Accurately predicting the time of occurrence of an event of interest is a critical problem in longitudinal data analysis. One of the main challenges in this context is the presence of instances whose event outcomes become unobservable after a certain time point or when some instances do not experience any event during the monitoring period. Such a phenomenon is called censoring which can be effectively handled using survival analysis techniques. Traditionally, statistical approaches have been widely developed in the literature to overcome this censoring issue. In addition, many machine learning algorithms are adapted to effectively handle survival data and tackle other challenging problems that arise in real-world data. In this survey, we provide a comprehensive and structured review of the representative statistical methods along with the machine learning techniques used in survival analysis and provide a detailed taxonomy of the existing methods. We also discuss several topics that are closely related to survival analysis and illustrate several successful applications in various real-world application domains. We hope that this paper will provide a more thorough understanding of the recent advances in survival analysis and offer some guidelines on applying these approaches to solve new problems that arise in applications with censored data.

cs.LG↗

arXiv2007

TRUST-TECH based Methods for Optimization and Learning

Many problems that arise in machine learning domain deal with nonlinearity and quite often demand users to obtain global optimal solutions rather than local optimal ones. Optimization problems are inherent in machine learning algorithms and hence many methods in machine learning were inherited from the optimization literature. Popularly known as the initialization problem, the ideal set of parameters required will significantly depend on the given initialization values. The recently developed TRUST-TECH (TRansformation Under STability-reTaining Equilibria CHaracterization) methodology systematically explores the subspace of the parameters to obtain a complete set of local optimal solutions. In this thesis work, we propose TRUST-TECH based methods for solving several optimization and machine learning problems. Two stages namely, the local stage and the neighborhood-search stage, are repeated alternatively in the solution space to achieve improvements in the quality of the solutions. Our methods were tested on both synthetic and real datasets and the advantages of using this novel framework are clearly manifested. This framework not only reduces the sensitivity to initialization, but also allows the flexibility for the practitioners to use various global and local methods that work well for a particular problem of interest. Other hierarchical stochastic algorithms like evolutionary algorithms and smoothing algorithms are also studied and frameworks for combining these methods with TRUST-TECH have been proposed and evaluated on several test systems.

cs.AI↗