Chase Van Amburg | Searcharxiv

arXiv2026

How recombination rates affect escape from low-fitness states

Adaptation often requires the assembly of favorable combinations of mutations that are individually deleterious. As a result, populations may remain trapped in low-fitness genetic states even when higher-fitness genotypes exist. Recombination plays a dual role in this process because it can both generate and disrupt advantageous multilocus combinations. Previous work showed that the balance between selection and recombination determines whether populations cross fitness valleys or persist in low-fitness states associated with demographic decline. We study this problem in a three-locus model consisting of two selected loci and a recombination modifier locus. The modifier has no direct effect on fitness but alters the recombination rate between the selected loci, allowing recombination itself to evolve. We characterize the fixation states of the system and derive explicit conditions for the local stability of the low-fitness fixation set. Stability depends on selection strength, recombination among selected loci, recombination between the modifier and selected loci, and modifier composition. In the classical two-locus model, stability depends on a single recombination parameter. By contrast, the modifier model generates a continuum of fixation states whose stability varies with modifier frequency. Populations with identical selected-haplotype frequencies can therefore differ in stability solely because they differ in modifier composition. We further show that modifier polymorphism can either stabilize or destabilize the low-fitness state, depending on the relative magnitudes of modifier-dependent recombination rates. These results demonstrate that genetic variation affecting recombination alters evolutionary outcomes not only by changing the formation of favorable multilocus combinations but also by changing the stability of alternative evolutionary states.

q-bio.PE↗

arXiv2025

The Emergence of Complex Behavior in Large-Scale Ecological Environments

We explore how physical scale and population size shape the emergence of complex behaviors in open-ended ecological environments. In our setting, agents are unsupervised and have no explicit rewards or learning objectives but instead evolve over time according to reproduction, mutation, and selection. As they act, agents also shape their environment and the population around them in an ongoing dynamic ecology. Our goal is not to optimize a single high-performance policy, but instead to examine how behaviors emerge and evolve across large populations due to natural competition and environmental pressures. We use modern hardware along with a new multi-agent simulator to scale the environment and population to sizes much larger than previously attempted, reaching populations of over 60,000 agents, each with their own evolved neural network policy. We identify various emergent behaviors such as long-range resource extraction, vision-based foraging, and predation that arise under competitive and survival pressures. We examine how sensing modalities and environmental scale affect the emergence of these behaviors and find that some of them appear only in sufficiently large environments and populations, and that larger scales increase the stability and consistency of these emergent behaviors. While there is a rich history of research in evolutionary settings, our scaling results on modern hardware provide promising new directions to explore ecology as an instrument of machine learning in an era of increasingly abundant computational resources and efficient machine frameworks. Experimental code is available at https://github.com/jbejjani2022/ecological-emergent-behavior.

cs.MA↗