arXiv subjects

Chen Li

Publications and source records attributed to Chen Li.

At least 397 records · Page 22Linked to original sources

arXiv2022

IL-MCAM: An interactive learning and multi-channel attention mechanism-based weakly supervised colorectal histopathology image classification approach

In recent years, colorectal cancer has become one of the most significant diseases that endanger human health. Deep learning methods are increasingly important for the classification of colorectal histopathology images. However, existing approaches focus more on end-to-end automatic classification using computers rather than human-computer interaction. In this paper, we propose an IL-MCAM framework. It is based on attention mechanisms and interactive learning. The proposed IL-MCAM framework includes two stages: automatic learning (AL) and interactivity learning (IL). In the AL stage, a multi-channel attention mechanism model containing three different attention mechanism channels and convolutional neural networks is used to extract multi-channel features for classification. In the IL stage, the proposed IL-MCAM framework continuously adds misclassified images to the training set in an interactive approach, which improves the classification ability of the MCAM model. We carried out a comparison experiment on our dataset and an extended experiment on the HE-NCT-CRC-100K dataset to verify the performance of the proposed IL-MCAM framework, achieving classification accuracies of 98.98% and 99.77%, respectively. In addition, we conducted an ablation experiment and an interchangeability experiment to verify the ability and interchangeability of the three channels. The experimental results show that the proposed IL-MCAM framework has excellent performance in the colorectal histopathological image classification tasks.

cs.CV↗

arXiv2022

CVM-Cervix: A Hybrid Cervical Pap-Smear Image Classification Framework Using CNN, Visual Transformer and Multilayer Perceptron

Cervical cancer is the seventh most common cancer among all the cancers worldwide and the fourth most common cancer among women. Cervical cytopathology image classification is an important method to diagnose cervical cancer. Manual screening of cytopathology images is time-consuming and error-prone. The emergence of the automatic computer-aided diagnosis system solves this problem. This paper proposes a framework called CVM-Cervix based on deep learning to perform cervical cell classification tasks. It can analyze pap slides quickly and accurately. CVM-Cervix first proposes a Convolutional Neural Network module and a Visual Transformer module for local and global feature extraction respectively, then a Multilayer Perceptron module is designed to fuse the local and global features for the final classification. Experimental results show the effectiveness and potential of the proposed CVM-Cervix in the field of cervical Pap smear image classification. In addition, according to the practical needs of clinical work, we perform a lightweight post-processing to compress the model.

cs.CV↗

arXiv2022

A Comparative Study of Gastric Histopathology Sub-size Image Classification: from Linear Regression to Visual Transformer

Gastric cancer is the fifth most common cancer in the world. At the same time, it is also the fourth most deadly cancer. Early detection of cancer exists as a guide for the treatment of gastric cancer. Nowadays, computer technology has advanced rapidly to assist physicians in the diagnosis of pathological pictures of gastric cancer. Ensemble learning is a way to improve the accuracy of algorithms, and finding multiple learning models with complementarity types is the basis of ensemble learning. The complementarity of sub-size pathology image classifiers when machine performance is insufficient is explored in this experimental platform. We choose seven classical machine learning classifiers and four deep learning classifiers for classification experiments on the GasHisSDB database. Among them, classical machine learning algorithms extract five different image virtual features to match multiple classifier algorithms. For deep learning, we choose three convolutional neural network classifiers. In addition, we also choose a novel Transformer-based classifier. The experimental platform, in which a large number of classical machine learning and deep learning methods are performed, demonstrates that there are differences in the performance of different classifiers on GasHisSDB. Classical machine learning models exist for classifiers that classify Abnormal categories very well, while classifiers that excel in classifying Normal categories also exist. Deep learning models also exist with multiple models that can be complementarity. Suitable classifiers are selected for ensemble learning, when machine performance is insufficient. This experimental platform demonstrates that multiple classifiers are indeed complementarity and can improve the efficiency of ensemble learning. This can better assist doctors in diagnosis, improve the detection of gastric cancer, and increase the cure rate.

eess.IV↗

arXiv2022

Application of Graph Based Features in Computer Aided Diagnosis for Histopathological Image Classification of Gastric Cancer

The gold standard for gastric cancer detection is gastric histopathological image analysis, but there are certain drawbacks in the existing histopathological detection and diagnosis. In this paper, based on the study of computer aided diagnosis system, graph based features are applied to gastric cancer histopathology microscopic image analysis, and a classifier is used to classify gastric cancer cells from benign cells. Firstly, image segmentation is performed, and after finding the region, cell nuclei are extracted using the k-means method, the minimum spanning tree (MST) is drawn, and graph based features of the MST are extracted. The graph based features are then put into the classifier for classification. In this study, different segmentation methods are compared in the tissue segmentation stage, among which are Level-Set, Otsu thresholding, watershed, SegNet, U-Net and Trans-U-Net segmentation; Graph based features, Red, Green, Blue features, Grey-Level Co-occurrence Matrix features, Histograms of Oriented Gradient features and Local Binary Patterns features are compared in the feature extraction stage; Radial Basis Function (RBF) Support Vector Machine (SVM), Linear SVM, Artificial Neural Network, Random Forests, k-NearestNeighbor, VGG16, and Inception-V3 are compared in the classifier stage. It is found that using U-Net to segment tissue areas, then extracting graph based features, and finally using RBF SVM classifier gives the optimal results with 94.29%.

eess.IV↗

arXiv2022

Optimal Randomized Approximations for Matrix based Renyi's Entropy

The Matrix-based Renyi's entropy enables us to directly measure information quantities from given data without the costly probability density estimation of underlying distributions, thus has been widely adopted in numerous statistical learning and inference tasks. However, exactly calculating this new information quantity requires access to the eigenspectrum of a semi-positive definite (SPD) matrix $A$ which grows linearly with the number of samples $n$, resulting in a $O(n^3)$ time complexity that is prohibitive for large-scale applications. To address this issue, this paper takes advantage of stochastic trace approximations for matrix-based Renyi's entropy with arbitrary $α\in R^+$ orders, lowering the complexity by converting the entropy approximation to a matrix-vector multiplication problem. Specifically, we develop random approximations for integer order $α$ cases and polynomial series approximations (Taylor and Chebyshev) for non-integer $α$ cases, leading to a $O(n^2sm)$ overall time complexity, where $s,m \ll n$ denote the number of vector queries and the polynomial order respectively. We theoretically establish statistical guarantees for all approximation algorithms and give explicit order of s and m with respect to the approximation error $\varepsilon$, showing optimal convergence rate for both parameters up to a logarithmic factor. Large-scale simulations and real-world applications validate the effectiveness of the developed approximations, demonstrating remarkable speedup with negligible loss in accuracy.

stat.ML↗

arXiv2022

Application of Transfer Learning and Ensemble Learning in Image-level Classification for Breast Histopathology

Background: Breast cancer has the highest prevalence in women globally. The classification and diagnosis of breast cancer and its histopathological images have always been a hot spot of clinical concern. In Computer-Aided Diagnosis (CAD), traditional classification models mostly use a single network to extract features, which has significant limitations. On the other hand, many networks are trained and optimized on patient-level datasets, ignoring the application of lower-level data labels. Method: This paper proposes a deep ensemble model based on image-level labels for the binary classification of benign and malignant lesions of breast histopathological images. First, the BreaKHis dataset is randomly divided into a training, validation and test set. Then, data augmentation techniques are used to balance the number of benign and malignant samples. Thirdly, considering the performance of transfer learning and the complementarity between each network, VGG16, Xception, ResNet50, DenseNet201 are selected as the base classifiers. Result: In the ensemble network model with accuracy as the weight, the image-level binary classification achieves an accuracy of $98.90\%$. In order to verify the capabilities of our method, the latest Transformer and Multilayer Perception (MLP) models have been experimentally compared on the same dataset. Our model wins with a $5\%-20\%$ advantage, emphasizing the ensemble model's far-reaching significance in classification tasks. Conclusion: This research focuses on improving the model's classification performance with an ensemble algorithm. Transfer learning plays an essential role in small datasets, improving training speed and accuracy. Our model has outperformed many existing approaches in accuracy, providing a method for the field of auxiliary medical diagnosis.

cs.CV↗

arXiv2022

What Can Machine Vision Do for Lymphatic Histopathology Image Analysis: A Comprehensive Review

In the past ten years, the computing power of machine vision (MV) has been continuously improved, and image analysis algorithms have developed rapidly. At the same time, histopathological slices can be stored as digital images. Therefore, MV algorithms can provide doctors with diagnostic references. In particular, the continuous improvement of deep learning algorithms has further improved the accuracy of MV in disease detection and diagnosis. This paper reviews the applications of image processing technology based on MV in lymphoma histopathological images in recent years, including segmentation, classification and detection. Finally, the current methods are analyzed, some more potential methods are proposed, and further prospects are made.

cs.CV↗

arXiv2022

MuCGEC: a Multi-Reference Multi-Source Evaluation Dataset for Chinese Grammatical Error Correction

This paper presents MuCGEC, a multi-reference multi-source evaluation dataset for Chinese Grammatical Error Correction (CGEC), consisting of 7,063 sentences collected from three Chinese-as-a-Second-Language (CSL) learner sources. Each sentence is corrected by three annotators, and their corrections are carefully reviewed by a senior annotator, resulting in 2.3 references per sentence. We conduct experiments with two mainstream CGEC models, i.e., the sequence-to-sequence model and the sequence-to-edit model, both enhanced with large pretrained language models, achieving competitive benchmark performance on previous and our datasets. We also discuss CGEC evaluation methodologies, including the effect of multiple references and using a char-based metric. Our annotation guidelines, data, and code are available at \url{https://github.com/HillZhang1999/MuCGEC}.

cs.CL↗

arXiv2022

Analysis of Wall Heat Flux of a Hypersonic Shock Wave / Boundary Layer Interaction with a Novel Decomposition Formula

The generation mechanism of wall heat flux is one of the fundamental problems in supersonic/hypersonic turbulent boundary layers. A novel heat decomposition formula under the curvilinear coordinate was proposed in this paper. The new formula has wider application scope and can be applied in the configurations with grid deformed. The wall heat flux of an interaction between shock wave and the turbulent boundary layer over a compression corner is analyzed by the new formula. The results indicated good performance of the formula in the complex interaction region. The contributions of different energy transport processes were obtained. The contributions by the turbulent fluctuations e.g., Reynolds stresses and turbulent transport of heat flux, were significantly increased, while the processes by the mean profile e.g., molecular stresses and heat conduction, can be neglected. In addition, the pressure work is another contributor to the wall heat flux and the streamwise component works mainly in the shear layer and the reattachment point, while pressure in the wall-normal direction is concentrated in the vicinity of the reattachment point.

physics.flu-dyn↗

arXiv2022

A Comprehensive Survey with Quantitative Comparison of Image Analysis Methods for Microorganism Biovolume Measurements

With the acceleration of urbanization and living standards, microorganisms play increasingly important roles in industrial production, bio-technique, and food safety testing. Microorganism biovolume measurements are one of the essential parts of microbial analysis. However, traditional manual measurement methods are time-consuming and challenging to measure the characteristics precisely. With the development of digital image processing techniques, the characteristics of the microbial population can be detected and quantified. The changing trend can be adjusted in time and provided a basis for the improvement. The applications of the microorganism biovolume measurement method have developed since the 1980s. More than 62 articles are reviewed in this study, and the articles are grouped by digital image segmentation methods with periods. This study has high research significance and application value, which can be referred to microbial researchers to have a comprehensive understanding of microorganism biovolume measurements using digital image analysis methods and potential applications.

cs.CV↗

arXiv2022

EMDS-6: Environmental Microorganism Image Dataset Sixth Version for Image Denoising, Segmentation, Feature Extraction, Classification and Detection Methods Evaluation

Environmental microorganisms (EMs) are ubiquitous around us and have an important impact on the survival and development of human society. However, the high standards and strict requirements for the preparation of environmental microorganism (EM) data have led to the insufficient of existing related databases, not to mention the databases with GT images. This problem seriously affects the progress of related experiments. Therefore, This study develops the Environmental Microorganism Dataset Sixth Version (EMDS-6), which contains 21 types of EMs. Each type of EM contains 40 original and 40 GT images, in total 1680 EM images. In this study, in order to test the effectiveness of EMDS-6. We choose the classic algorithms of image processing methods such as image denoising, image segmentation and target detection. The experimental result shows that EMDS-6 can be used to evaluate the performance of image denoising, image segmentation, image feature extraction, image classification, and object detection methods.

cs.CV↗

arXiv2022

A State-of-the-art Survey of U-Net in Microscopic Image Analysis: from Simple Usage to Structure Mortification

Image analysis technology is used to solve the inadvertences of artificial traditional methods in disease, wastewater treatment, environmental change monitoring analysis and convolutional neural networks (CNN) play an important role in microscopic image analysis. An important step in detection, tracking, monitoring, feature extraction, modeling and analysis is image segmentation, in which U-Net has increasingly applied in microscopic image segmentation. This paper comprehensively reviews the development history of U-Net, and analyzes various research results of various segmentation methods since the emergence of U-Net and conducts a comprehensive review of related papers. First, this paper has summarized the improved methods of U-Net and then listed the existing significance of image segmentation techniques and their improvements that has introduced over the years. Finally, focusing on the different improvement strategies of U-Net in different papers, the related work of each application target is reviewed according to detailed technical categories to facilitate future research. Researchers can clearly see the dynamics of transmission of technological development and keep up with future trends in this interdisciplinary field.

eess.IV↗

arXiv2022

TOD-CNN: An Effective Convolutional Neural Network for Tiny Object Detection in Sperm Videos

The detection of tiny objects in microscopic videos is a problematic point, especially in large-scale experiments. For tiny objects (such as sperms) in microscopic videos, current detection methods face challenges in fuzzy, irregular, and precise positioning of objects. In contrast, we present a convolutional neural network for tiny object detection (TOD-CNN) with an underlying data set of high-quality sperm microscopic videos (111 videos, $>$ 278,000 annotated objects), and a graphical user interface (GUI) is designed to employ and test the proposed model effectively. TOD-CNN is highly accurate, achieving $85.60\%$ AP$_{50}$ in the task of real-time sperm detection in microscopic videos. To demonstrate the importance of sperm detection technology in sperm quality analysis, we carry out relevant sperm quality evaluation metrics and compare them with the diagnosis results from medical doctors.

cs.CV↗

arXiv2022

Subspace Nonnegative Matrix Factorization for Feature Representation

Traditional nonnegative matrix factorization (NMF) learns a new feature representation on the whole data space, which means treating all features equally. However, a subspace is often sufficient for accurate representation in practical applications, and redundant features can be invalid or even harmful. For example, if a camera has some sensors destroyed, then the corresponding pixels in the photos from this camera are not helpful to identify the content, which means only the subspace consisting of remaining pixels is worthy of attention. This paper proposes a new NMF method by introducing adaptive weights to identify key features in the original space so that only a subspace involves generating the new representation. Two strategies are proposed to achieve this: the fuzzier weighted technique and entropy regularized weighted technique, both of which result in an iterative solution with a simple form. Experimental results on several real-world datasets demonstrated that the proposed methods can generate a more accurate feature representation than existing methods. The code developed in this study is available at https://github.com/WNMF1/FWNMF-ERWNMF.

cs.CV↗

arXiv2022

A State-of-the-art Survey of Object Detection Techniques in Microorganism Image Analysis: From Classical Methods to Deep Learning Approaches

Microorganisms play a vital role in human life. Therefore, microorganism detection is of great significance to human beings. However, the traditional manual microscopic detection methods have the disadvantages of long detection cycle, low detection accuracy in large orders, and great difficulty in detecting uncommon microorganisms. Therefore, it is meaningful to apply computer image analysis technology to the field of microorganism detection. Computer image analysis can realize high-precision and high-efficiency detection of microorganisms. In this review, first,we analyse the existing microorganism detection methods in chronological order, from traditional image processing and traditional machine learning to deep learning methods. Then, we analyze and summarize these existing methods and introduce some potential methods, including visual transformers. In the end, the future development direction and challenges of microorganism detection are discussed. In general, we have summarized 142 related technical papers from 1985 to the present. This review will help researchers have a more comprehensive understanding of the development process, research status, and future trends in the field of microorganism detection and provide a reference for researchers in other fields.

cs.CV↗

arXiv2022

Regulate the direct-indirect electronic band gap transition by electron-phonon interaction in BaSnO3

The neutron powder diffraction, specific heat, thermal conductivity, and Raman scattering measurements were presented to study the interplays of lattice, phonons and electrons of the Sr-doping Ba1-xSrxSnO3 (x was less than or equal to 0.1). Although Ba1-xSrxSnO3 kept the cubic lattice, the Raman spectra suggested a dynamic distortion at low temperature. The density functional theory was applied to analyze the electronic structures and phonon dispersions of Ba1-xSrxSnO3(x = 0, 0.0125), and the behaviors of electron bands around Fermi levels were discussed. According to the experimental and theoretical results, the Sr-doping played a significant role in tuning the indirect band gap of BaSnO3 and influenced the electron-phonon interaction.

cond-mat.mtrl-sci↗

arXiv2022

Scarce Data Driven Deep Learning of Drones via Generalized Data Distribution Space

Increased drone proliferation in civilian and professional settings has created new threat vectors for airports and national infrastructures. The economic damage for a single major airport from drone incursions is estimated to be millions per day. Due to the lack of diverse drone training data, accurate training of deep learning detection algorithms under scarce data is an open challenge. Existing methods largely rely on collecting diverse and comprehensive experimental drone footage data, artificially induced data augmentation, transfer and meta-learning, as well as physics-informed learning. However, these methods cannot guarantee capturing diverse drone designs and fully understanding the deep feature space of drones. Here, we show how understanding the general distribution of the drone data via a Generative Adversarial Network (GAN) and explaining the missing features using Topological Data Analysis (TDA) - can allow us to acquire missing data to achieve rapid and more accurate learning. We demonstrate our results on a drone image dataset, which contains both real drone images as well as simulated images from computer-aided design. When compared to random data collection (usual practice - discriminator accuracy of 94.67\% after 200 epochs), our proposed GAN-TDA informed data collection method offers a significant 4\% improvement (99.42\% after 200 epochs). We believe that this approach of exploiting general data distribution knowledge form neural networks can be applied to a wide range of scarce data open challenges.

cs.CV↗

arXiv2022

Diffraction of strongly interacting molecular Bose-Einstein condensate from standing wave light pulses

We study the effects of strong inter-particle interaction on diffraction of a Bose-Einstein condensate of $^6Li_2$ molecules from a periodic potential created by pulses of a far detuned optical standing wave. For short pulses we observe the standard Kapitza-Dirac diffraction, with the contrast of the diffraction pattern strongly reduced for very large interactions due to interaction dependent loss processes. For longer pulses diffraction shows the characteristic for matter waves impinging on an array of tubes and coherent channeling transport. We observe a slowing down of the time evolution governing the population of the momentum modes caused by the strong atom interaction. A simple physical explanation of that slowing down is the phase shift caused by the self-interaction of the forming matter wave patterns inside the standing light wave. Simple 1D mean field simulations qualitatively capture the phenomenon, however to quantitatively reproduce the experimental results the molecular scattering length has to be multiplied by factor of 4.2. In addition, two contributions to interaction-dependent degradation of the coherent diffraction patterns were identified: (i) in-trap loss of molecules during the lattice pulse, which involves dissociation of Feshbach molecules into free atoms, as confirmed by radio-frequency spectroscopy and (ii) collisions between different momentum modes during separation. This was confirmed by interferometrically recombining the diffracted momenta into the zero-momentum peak, which consequently removed the scattering background.

cond-mat.quant-gas↗