arXiv subjects

Chen Li

Publications and source records attributed to Chen Li.

At least 415 records · Page 23Linked to original sources

arXiv2022

Towards Domain Generalization in Object Detection

Despite the striking performance achieved by modern detectors when training and test data are sampled from the same or similar distribution, the generalization ability of detectors under unknown distribution shifts remains hardly studied. Recently several works discussed the detectors' adaptation ability to a specific target domain which are not readily applicable in real-world applications since detectors may encounter various environments or situations while pre-collecting all of them before training is inconceivable. In this paper, we study the critical problem, domain generalization in object detection (DGOD), where detectors are trained with source domains and evaluated on unknown target domains. To thoroughly evaluate detectors under unknown distribution shifts, we formulate the DGOD problem and propose a comprehensive evaluation benchmark to fill the vacancy. Moreover, we propose a novel method named Region Aware Proposal reweighTing (RAPT) to eliminate dependence within RoI features. Extensive experiments demonstrate that current DG methods fail to address the DGOD problem and our method outperforms other state-of-the-art counterparts.

cs.CV↗

arXiv2022

Applications of Artificial Neural Networks in Microorganism Image Analysis: A Comprehensive Review from Conventional Multilayer Perceptron to Popular Convolutional Neural Network and Potential Visual Transformer

Microorganisms are widely distributed in the human daily living environment. They play an essential role in environmental pollution control, disease prevention and treatment, and food and drug production. The analysis of microorganisms is essential for making full use of different microorganisms. The conventional analysis methods are laborious and time-consuming. Therefore, the automatic image analysis based on artificial neural networks is introduced to optimize it. However, the automatic microorganism image analysis faces many challenges, such as the requirement of a robust algorithm caused by various application occasions, insignificant features and easy under-segmentation caused by the image characteristic, and various analysis tasks. Therefore, we conduct this review to comprehensively discuss the characteristics of microorganism image analysis based on artificial neural networks. In this review, the background and motivation are introduced first. Then, the development of artificial neural networks and representative networks are presented. After that, the papers related to microorganism image analysis based on classical and deep neural networks are reviewed from the perspectives of different tasks. In the end, the methodology analysis and potential direction are discussed.

cs.CV↗

arXiv2022

Towards Abstractive Grounded Summarization of Podcast Transcripts

Podcasts have recently shown a rapid rise in popularity. Summarization of podcast transcripts is of practical benefit to both content providers and consumers. It helps consumers to quickly decide whether they will listen to the podcasts and reduces the cognitive load of content providers to write summaries. Nevertheless, podcast summarization faces significant challenges including factual inconsistencies with respect to the inputs. The problem is exacerbated by speech disfluencies and recognition errors in transcripts of spoken language. In this paper, we explore a novel abstractive summarization method to alleviate these challenges. Specifically, our approach learns to produce an abstractive summary while grounding summary segments in specific portions of the transcript to allow for full inspection of summary details. We conduct a series of analyses of the proposed approach on a large podcast dataset and show that the approach can achieve promising results. Grounded summaries bring clear benefits in locating the summary and transcript segments that contain inconsistent information, and hence significantly improve summarization quality in both automatic and human evaluation metrics.

cs.CL↗

arXiv2022

Regularized Modal Regression on Markov-dependent Observations: A Theoretical Assessment

Modal regression, a widely used regression protocol, has been extensively investigated in statistical and machine learning communities due to its robustness to outliers and heavy-tailed noises. Understanding modal regression's theoretical behavior can be fundamental in learning theory. Despite significant progress in characterizing its statistical property, the majority of the results are based on the assumption that samples are independent and identical distributed (i.i.d.), which is too restrictive for real-world applications. This paper concerns the statistical property of regularized modal regression (RMR) within an important dependence structure - Markov dependent. Specifically, we establish the upper bound for RMR estimator under moderate conditions and give an explicit learning rate. Our results show that the Markov dependence impacts on the generalization error in the way that sample size would be discounted by a multiplicative factor depending on the spectral gap of underlying Markov chain. This result shed a new light on characterizing the theoretical underpinning for robust regression.

stat.ML↗

arXiv2022

A minimalistic stochastic dynamics model of cluttered obstacle traversal

Robots are still poor at traversing cluttered large obstacles required for important applications like search and rescue. By contrast, animals are excellent at doing so, often using direct physical interaction with obstacles rather than avoiding them. Here, towards understanding the dynamics of cluttered obstacle traversal, we developed a minimalistic stochastic dynamics simulation inspired by our recent study of insects traversing grass-like beams. The 2-D model system consists of a forward self-propelled circular locomotor translating on a frictionless level plane with a lateral random force and interacting with two adjacent horizontal beams that form a gate. We found that traversal probability increases monotonically with propulsive force, but first increases then decreases with random force magnitude. For asymmetric beams with different stiffness, traversal is more likely towards the side of the less stiff beam. These observations are in accord with those expected from a potential energy landscape approach. Furthermore, we extended the single gate in a lattice configuration to form a large cluttered obstacle field. A Markov chain Monte Carlo method was applied to predict traversal in the large field, using the input-output probability map obtained from single gate simulations. This method achieved high accuracy in predicting the statistical distribution of the final location of the body within the obstacle field, while saving computation time by a factor of 10^5 over our dynamic simulation.

cs.RO↗

arXiv2022

Markov subsampling based Huber Criterion

Subsampling is an important technique to tackle the computational challenges brought by big data. Many subsampling procedures fall within the framework of importance sampling, which assigns high sampling probabilities to the samples appearing to have big impacts. When the noise level is high, those sampling procedures tend to pick many outliers and thus often do not perform satisfactorily in practice. To tackle this issue, we design a new Markov subsampling strategy based on Huber criterion (HMS) to construct an informative subset from the noisy full data; the constructed subset then serves as a refined working data for efficient processing. HMS is built upon a Metropolis-Hasting procedure, where the inclusion probability of each sampling unit is determined using the Huber criterion to prevent over scoring the outliers. Under mild conditions, we show that the estimator based on the subsamples selected by HMS is statistically consistent with a sub-Gaussian deviation bound. The promising performance of HMS is demonstrated by extensive studies on large scale simulations and real data examples.

stat.ML↗

arXiv2022

A State-of-the-art Survey of Artificial Neural Networks for Whole-slide Image Analysis:from Popular Convolutional Neural Networks to Potential Visual Transformers

To increase the objectivity and accuracy of pathologists' work, artificial neural network(ANN) methods have been generally needed in the segmentation, classification, and detection of histopathological WSI. In this paper, WSI analysis methods based on ANN are reviewed. Firstly, the development status of WSI and ANN methods is introduced. Secondly, we summarize the common ANN methods. Next, we discuss publicly available WSI datasets and evaluation metrics. These ANN architectures for WSI processing are divided into classical neural networks and deep neural networks(DNNs) and then analyzed. Finally, the application prospect of the analytical method in this field is discussed. The important potential method is Visual Transformers.

eess.IV↗

arXiv2022

A Survey of Semen Quality Evaluation in Microscopic Videos Using Computer Assisted Sperm Analysis

The Computer Assisted Sperm Analysis (CASA) plays a crucial role in male reproductive health diagnosis and Infertility treatment. With the development of the computer industry in recent years, a great of accurate algorithms are proposed. With the assistance of those novel algorithms, it is possible for CASA to achieve a faster and higher quality result. Since image processing is the technical basis of CASA, including pre-processing,feature extraction, target detection and tracking, these methods are important technical steps in dealing with CASA. The various works related to Computer Assisted Sperm Analysis methods in the last 30 years (since 1988) are comprehensively introduced and analysed in this survey. To facilitate understanding, the methods involved are analysed in the sequence of general steps in sperm analysis. In other words, the methods related to sperm detection (localization) are first analysed, and then the methods of sperm tracking are analysed. Beside this, we analyse and prospect the present situation and future of CASA. According to our work, the feasible for applying in sperm microscopic video of methods mentioned in this review is explained. Moreover, existing challenges of object detection and tracking in microscope video are potential to be solved inspired by this survey.

eess.IV↗

arXiv2022

EBHI:A New Enteroscope Biopsy Histopathological H&E Image Dataset for Image Classification Evaluation

Background and purpose: Colorectal cancer has become the third most common cancer worldwide, accounting for approximately 10% of cancer patients. Early detection of the disease is important for the treatment of colorectal cancer patients. Histopathological examination is the gold standard for screening colorectal cancer. However, the current lack of histopathological image datasets of colorectal cancer, especially enteroscope biopsies, hinders the accurate evaluation of computer-aided diagnosis techniques. Methods: A new publicly available Enteroscope Biopsy Histopathological H&E Image Dataset (EBHI) is published in this paper. To demonstrate the effectiveness of the EBHI dataset, we have utilized several machine learning, convolutional neural networks and novel transformer-based classifiers for experimentation and evaluation, using an image with a magnification of 200x. Results: Experimental results show that the deep learning method performs well on the EBHI dataset. Traditional machine learning methods achieve maximum accuracy of 76.02% and deep learning method achieves a maximum accuracy of 95.37%. Conclusion: To the best of our knowledge, EBHI is the first publicly available colorectal histopathology enteroscope biopsy dataset with four magnifications and five types of images of tumor differentiation stages, totaling 5532 images. We believe that EBHI could attract researchers to explore new classification algorithms for the automated diagnosis of colorectal cancer, which could help physicians and patients in clinical settings.

eess.IV↗

arXiv2022

Generating Disentangled Arguments with Prompts: A Simple Event Extraction Framework that Works

Event Extraction bridges the gap between text and event signals. Based on the assumption of trigger-argument dependency, existing approaches have achieved state-of-the-art performance with expert-designed templates or complicated decoding constraints. In this paper, for the first time we introduce the prompt-based learning strategy to the domain of Event Extraction, which empowers the automatic exploitation of label semantics on both input and output sides. To validate the effectiveness of the proposed generative method, we conduct extensive experiments with 11 diverse baselines. Empirical results show that, in terms of F1 score on Argument Extraction, our simple architecture is stronger than any other generative counterpart and even competitive with algorithms that require template engineering. Regarding the measure of recall, it sets new overall records for both Argument and Trigger Extractions. We hereby recommend this framework to the community, with the code publicly available at https://git.io/GDAP.

cs.CL↗

arXiv2022

Maliva: Using Machine Learning to Rewrite Visualization Queries Under Time Constraints

We consider data-visualization systems where a middleware layer translates a frontend request to a SQL query to a backend database to compute visual results. We study the problem of answering a visualization request within a limited time constraint due to the responsiveness requirement. We explore the optimization options of rewriting an original query by adding hints and/or doing approximations so that the total time is within the time constraint. We develop a novel middleware solution called Maliva based on machine learning (ML) techniques. It applies the Markov Decision Process (MDP) model to decide how to rewrite queries and uses training instances to learn an agent to make a sequence of decisions judiciously for an online request. We give a full specification of the technique, including how to construct an MDP model, how to train an agent, and how to use approximating rewrite options. Our experiments on both real and synthetic datasets show that Maliva performs significantly better than a baseline solution that does not do any rewriting, in terms of both the probability of serving requests interactively and query execution time.

cs.DB↗

arXiv2022

A Comparative Study of Deep Learning Classification Methods on a Small Environmental Microorganism Image Dataset (EMDS-6): from Convolutional Neural Networks to Visual Transformers

In recent years, deep learning has made brilliant achievements in Environmental Microorganism (EM) image classification. However, image classification of small EM datasets has still not obtained good research results. Therefore, researchers need to spend a lot of time searching for models with good classification performance and suitable for the current equipment working environment. To provide reliable references for researchers, we conduct a series of comparison experiments on 21 deep learning models. The experiment includes direct classification, imbalanced training, and hyperparameter tuning experiments. During the experiments, we find complementarities among the 21 models, which is the basis for feature fusion related experiments. We also find that the data augmentation method of geometric deformation is difficult to improve the performance of VTs (ViT, DeiT, BotNet and T2T-ViT) series models. In terms of model performance, Xception has the best classification performance, the ViT model consumes the least time for training, and the ShuffleNet-V2 model has the least number of parameters.

cs.CV↗

arXiv2022

Energy, Momentum and Angular Momentum Transfer Between Electrons and Nuclei

The recently developed exact factorization approach condenses all electronic effects on the nuclear subsystem into scalar and vector potentials that appear in an effective time dependent Schrödinger equation. Starting from this equation, we derive subsystem Ehrenfest identities characterizing the energy, momentum and angular momentum transfer between electrons and nuclei. An effective electromagnetic force operator induced by the electromagnetic field corresponding to the effective scalar and vector potentials appears in all three identities. The effective magnetic field has two components that can be identified with the Berry curvature calculated with (a) different cartesian coordinates of the same nucleus and (b) arbitrary cartesian coordinates of two different nuclei. (a) has a classical interpretation as the induced magnetic field felt by the nucleus, while (b) has no classical analog. Subsystem Ehrenfest identities are ideally suited for quantifying energy transfer in electron-phonon systems. With two explicit examples we demonstrate the usefulness of the new identities.

physics.chem-ph↗

arXiv2022

JEDI: These aren't the JSON documents you're looking for... (Extended Version*)

The JavaScript Object Notation (JSON) is a popular data format used in document stores to natively support semi-structured data. In this paper, we address the problem of JSON similarity lookup queries: given a query document and a distance threshold $τ$, retrieve all JSON documents that are within $τ$ from the query document. Due to its recursive definition, JSON data are naturally represented as trees. Different from other hierarchical formats such as XML, JSON supports both ordered and unordered sibling collections within a single document. This feature poses a new challenge to the tree model and distance computation. We propose JSON tree, a lossless tree representation of JSON documents, and define the JSON Edit Distance (JEDI), the first edit-based distance measure for JSON documents. We develop an algorithm, called QuickJEDI, for computing JEDI by leveraging a new technique to prune expensive sibling matchings. It outperforms a baseline algorithm by an order of magnitude in runtime. To boost the performance of JSON similarity queries, we introduce an index called JSIM and a highly effective upper bound based on tree sorting. Our algorithm for the upper bound runs in $O(n τ)$ time and $O(n + τ\log n)$ space, which substantially improves the previous best bound of $O(n^2)$ time and $O(n \log n)$ space (where $n$ is the tree size). Our experimental evaluation shows that our solution scales to databases with millions of documents and JSON trees with tens of thousands of nodes.

cs.DB↗

arXiv2022

Optimizing Machine Learning Inference Queries with Correlative Proxy Models

We consider accelerating machine learning (ML) inference queries on unstructured datasets. Expensive operators such as feature extractors and classifiers are deployed as user-defined functions(UDFs), which are not penetrable with classic query optimization techniques such as predicate push-down. Recent optimization schemes (e.g., Probabilistic Predicates or PP) assume independence among the query predicates, build a proxy model for each predicate offline, and rewrite a new query by injecting these cheap proxy models in the front of the expensive ML UDFs. In such a manner, unlikely inputs that do not satisfy query predicates are filtered early to bypass the ML UDFs. We show that enforcing the independence assumption in this context may result in sub-optimal plans. In this paper, we propose CORE, a query optimizer that better exploits the predicate correlations and accelerates ML inference queries. Our solution builds the proxy models online for a new query and leverages a branch-and-bound search process to reduce the building costs. Results on three real-world text, image and video datasets show that CORE improves the query throughput by up to 63% compared to PP and up to 80% compared to running the queries as it is.

cs.DB↗

arXiv2021

Entropy Regularized Iterative Weighted Shrinkage-Thresholding Algorithm (ERIWSTA): An Application to CT Image Restoration

The iterative weighted shrinkage-thresholding algorithm (IWSTA) has shown superiority to the classic unweighted iterative shrinkage-thresholding algorithm (ISTA) for solving linear inverse problems, which address the attributes differently. This paper proposes a new entropy regularized IWSTA (ERIWSTA) that adds an entropy regularizer to the cost function to measure the uncertainty of the weights to stimulate attributes to participate in problem solving. Then, the weights are solved with a Lagrange multiplier method to obtain a simple iterative update. The weights can be explained as the probability of the contribution of an attribute to the problem solution. Experimental results on CT image restoration show that the proposed method has better performance in terms of convergence speed and restoration accuracy than the existing methods.

cs.CV↗

arXiv2021

Bayesian neural network priors for edge-preserving inversion

We consider Bayesian inverse problems wherein the unknown state is assumed to be a function with discontinuous structure a priori. A class of prior distributions based on the output of neural networks with heavy-tailed weights is introduced, motivated by existing results concerning the infinite-width limit of such networks. We show theoretically that samples from such priors have desirable discontinuous-like properties even when the network width is finite, making them appropriate for edge-preserving inversion. Numerically we consider deconvolution problems defined on one- and two-dimensional spatial domains to illustrate the effectiveness of these priors; MAP estimation, dimension-robust MCMC sampling and ensemble-based approximations are utilized to probe the posterior distribution. The accuracy of point estimates is shown to exceed those obtained from non-heavy tailed priors, and uncertainty estimates are shown to provide more useful qualitative information.

cs.LG↗

arXiv2021

Geometric energy transfer in two-component systems

Factoring a wave function into marginal and conditional factors partitions the subsystem kinetic energy into two terms. The first depends solely on the marginal wave function, through its gauge-covariant derivative, while the second depends on the quantum metric of the conditional wave function over the manifold of marginal variables. We derive an identity for the rate of change of the second term.

quant-ph↗