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D. Stauffer

Publications and source records attributed to D. Stauffer.

At least 19 recordsLinked to original sources

Love kills: Simulations in Penna Ageing Model

The standard Penna ageing model with sexual reproduction is enlarged by adding additional bit-strings for love: Marriage happens only if the male love strings are sufficiently different from the female ones. We simulate at what level of required difference the population dies out.

q-bio.PE

Modelling survival and allele complementation in the evolution of genomes with polymorphic loci

We have simulated the evolution of sexually reproducing populations composed of individuals represented by diploid genomes. A series of eight bits formed an allele occupying one of 128 loci of one haploid genome (chromosome). The environment required a specific activity of each locus, this being the sum of the activities of both alleles located at the corresponding loci on two chromosomes. This activity is represented by the number of bits set to zero. In a constant environment the best fitted individuals were homozygous with alleles' activities corresponding to half of the environment requirement for a locus (in diploid genome two alleles at corresponding loci produced a proper activity). Changing the environment under a relatively low recombination rate promotes generation of more polymorphic alleles. In the heterozygous loci, alleles of different activities complement each other fulfilling the environment requirements. Nevertheless, the genetic pool of populations evolves in the direction of a very restricted number of complementing haplotypes and a fast changing environment kills the population. If simulations start with all loci heterozygous, they stay heterozygous for a long time.

q-bio.GN

Simulated self-organisation of death by inherited mutations

An agent-based computer simulation of death by inheritable mutations in a changing environment shows a maximal population, or avoids extinction, at so intermediate mutation rate of the individuals. Thus death seems needed to al for evolution of the fittest, as required by a changing environment.

q-bio.PE

Intermittency and Localization

In this paper, we show how simple logistic growth that was studied intensively during the last 200 years in many domains of science could be extended in a rather simple way and with these extensions is capable to produce a collection of behaviors widely observed in an enormous number of real-life systems in Economics, Sociology, Biology, Ecology and more.

physics.soc-ph

Emergence of firms in $(d+1)$-dimensional work space

Standard micro-economics concentrate on the description of markets but is seldom interested in production. Several economists discussed the concept of a firm, as opposed to an open labour market where entrepreneurs would recrute workers on the occasion of each business opportunity. Coase \cite{Coase} is one of them, who explains the existence of firms as institution because they reduce the transaction costs with respect to an open labour market. Whatever the rationale proposed by economists to account for the existence of firms, their perspective is based on efficiency and cost analysis. Little attention is paid to the dynamics of emergence and evolution of firms. The aim of the present manuscript is to check the global dynamical properties of a very simple model based on bounded rationality and reinforcement learning. Workers and managers are localised on a lattice and they choose collaborators on the basis of the success of previous work relations. The choice algorithm is largely inspired rom the observation and modeling of long term customer/sellers relationships observed on perishable goods markets discussed in Weisbuch etal\cite{Weisbuch} and Nadal etal\cite{Nadal}. The model presented here is in no way an alternative to Coase. We describe the build-up of long term relationships which do reduce transaction costs, and we deduce the dynamical properties of networks built from our simple assumptions. In conclusion, the present model explains the metastability of employment relations in the firm, but something has to be added to it to explain the more efficient workload repartition observed in real firms.

q-fin.GN

Applications of Physics and Mathematics to Social Science

This article introduces into the whole section on Social Sciences, edited by A. Nowak for this Encyclopedia, concentrating on the applications of mathematics and physics. Here under "mathematics" we include also all computer simulations if they are not taken from physics, while physics applications include simulations of models which basically existed already in physics before they were applied to social simulations. Thus obviously there is no sharp border between applications from physics and from mathematics in the sense of our definition. Also social science is not defined precisely. We will include some economics as well as some linguistics, but not social insects or fish swarms, nor human epidemics or demography. Also, we mention not only this section by also the section on agent-based modelling edited by F. Castiglione as containing articles of social interest.

physics.soc-ph

Boundary effects in a three-state modified voter model for languages

The standard three-state voter model is enlarged by including the outside pressure favouring one of the three choices and by adding some biased internal random noise. The Monte Carlo simulations are motivated by states with the population divided into three groups of various affinities to each other. We show the crucial influence of the boundaries for moderate lattice sizes like 500 x 500. By removing the fixed boundary at one side, we demonstrate that this can lead to the victory of one single choice. Noise in contrast stabilizes the choices of all three populations. In addition, we compute the persistence probability, i.e., the number of sites who have never changed their opinion during the simulation, and we consider the case of "rigid-minded" decision makers.

physics.soc-ph

Sexual reproduction from the male (men) point of view

To counterbalance the views presented here by Suzana Moss de Oliveira, we explain here the truth: How men are oppressed by Mother Nature, who may have made an error inventing us, and by living women, who could get rid of most of us. Why do women live longer than us? Why is the Y chromosome for men so small? What are the dangers of marital fidelity? In an appendix we mention the demographic challenges of the future with many old and few young people.

q-bio.PE

Does Sex Induce a Phase Transition?

We discovered a dynamic phase transition induced by sexual reproduction. The dynamics is a pure Darwinian rule with both fundamental ingredients to drive evolution: 1) random mutations and crossings which act in the sense of increasing the entropy (or diversity); and 2) selection which acts in the opposite sense by limiting the entropy explosion. Selection wins this competition if mutations performed at birth are few enough. By slowly increasing the average number m of mutations, however, the population suddenly undergoes a mutational degradation precisely at a transition point mc. Above this point, the "bad" alleles spread over the genetic pool of the population, overcoming the selection pressure. Individuals become selectively alike, and evolution stops. Only below this point, m < mc, evolutionary life is possible. The finite-size-scaling behaviour of this transition is exhibited for large enough "chromosome" lengths L. One important and surprising observation is the L-independence of the transition curves, for large L. They are also independent on the population size. Another is that mc is near unity, i.e. life cannot be stable with much more than one mutation per diploid genome, independent of the chromosome length, in agreement with reality. One possible consequence is that an eventual evolutionary jump towards larger L enabling the storage of more genetic information would demand an improved DNA copying machinery in order to keep the same total number of mutations per offspring.

q-bio.PE

Simulation of majority rule disturbed by power-law noise

Simulations are reported on the Ising two-dimensional ferromagnet in the presence of a special kind of noise. The noise spectrum P(n) follows a power law, where P(n) is the probability of flipping randomly selected n spins at each timestep. This is introduced to mimic the self-organized criticality as a model influence of a complex environment. We reproduced the phase transition similar to the case of P(n) = constant. Above some value of the noise amplitude the magnetisation tends to zero; otherwise it remains constant after some relaxation. Information of the initial spin orientation remains preserved to some extent by short-range spin-spin correlations. The distribution of the times between flips is exponential. The results are discussed as a step towards modeling of social systems.

cond-mat.stat-mech

Gamete recognition and complementary haplotypes in sexual Penna ageing model

In simulations of sexual reproduction with diploid individuals, we introduce that female haploid gametes recognize one specific allele of the genomes as a marker of the male haploid gametes. They fuse to zygotes preferrably with male gametes having a different marker than their own. This gamete recognition enhances the advantage of complementary bit-strings in the simulated diploid individuals, at low recombination rates. Thus with rare recombinations the bit-string evolve to be complementary; with recombination rate above about 0.1 instead they evolve under Darwinian purification selection, with few bits mutated.

q-bio.PE

Child mortality in Penna ageing model

Assuming the deleterious mutations in the Penna ageing model to affect mainly the young ages, we get an enhanced mortality at very young age, followed by a minimum of the mortality, and then the usual exponential increase of mortality with age.

q-bio.PE

Social applications of two-dimensional Ising models

I review three socio-economic models of economic opinions, urban segregation, and language change and show that the well known two-dimensional Ising model gives about the same results in each case.

physics.soc-ph