The Penna Model of Biological Aging
This review deals with computer simulation of biological ageing, particularly with the Penna model of 1995.
q-bio.PE↗
arXiv subjects
D. Stauffer
Publications and source records attributed to D. Stauffer.
Opinion Dynamics and Sociophysics
No abstract given. Contents: I. Definition and Introduction II. Schelling Model III. Opinion Dynamics IV. Languages, Hierarchies and Football V. Future Directions
physics.soc-ph↗
Scaling Properties, Fractals, and the Renormalisation Group Approach to Percolation
For Encyclopedia of Complexity and Systems Science (Springer Verlag). No abstract. I. Definition and Introduction II. Methods III. Quantities and Exponents IV. Fractal Dimension; Incipient Infinite Cluster V. Simple Renormalisation Group VI. Future Directions
cond-mat.dis-nn↗
Phase Transitions on Fractals and Networks
For Encyclopedia of Complexist and System Science No abstract given I. Definition and Introduction II. Ising Model III. Fractals IV. Diffusion on Fractals V. Ising Model on Fractals VI. Other Subjects ? VII. Networks VIII. Future Directions
cond-mat.dis-nn↗
Order-disorder phase transition in a cliquey social network
We investigate the network model of community by Watts, Dodds and Newman (D. J. Watts et al., Science 296 (2002) 1302) as a hierarchy of groups, each of 5 individuals. A homophily parameter $α$ controls the probability proportional to $\exp(-αx)$ of selection of neighbours against distance $x$. The network nodes are endowed with spin-like variables $s_i = \pm 1$, with Ising interaction $J>0$. The Glauber dynamics is used to investigate the order-disorder transition. The transition temperature $T_c$ is close to 3.8 for $α< 0.0$ and it falls down to zero above this value. The result provides a mathematical illustration of the social ability to a collective action {\it via} weak ties, as discussed by Granovetter in 1973.
physics.soc-ph↗
Birth, survival and death of languages by Monte Carlo simulation
Simulations of physicists for the competition between adult languages since 2003 are reviewed. How many languages are spoken by how many people? How many languages are contained in various language families? How do language similarities decay with geographical distance, and what effects do natural boundaries have? New simulations of bilinguality are given in an appendix.
physics.soc-ph↗
Inbreeding and outbreeding depressions in the Penna model as a result of crossover frequency
The population in the sexual Penna ageing model is first separated into several reproductively isolated groups. Then, after equilibration, sexual mixing between the groups is allowed. We study the changes in the population size due to this mixing and interpret them through a counterplay of purifying selection and of haplotype complementarity.
q-bio.PE↗
Agent-based Models of Financial Markets
This review deals with several microscopic (``agent-based'') models of financial markets which have been studied by economists and physicists over the last decade: Kim-Markowitz, Levy-Levy-Solomon, Cont-Bouchaud, Solomon-Weisbuch, Lux-Marchesi, Donangelo-Sneppen and Solomon-Levy-Huang. After an overview of simulation approaches in financial economics, we first give a summary of the Donangelo-Sneppen model of monetary exchange and compare it with related models in economics literature. Our selective review then outlines the main ingredients of some influential early models of multi-agent dynamics in financial markets (Kim-Markowitz, Levy-Levy-Solomon). As will be seen, these contributions draw their inspiration from the complex appearance of investors' interactions in real-life markets. Their main aim is to reproduce (and, thereby, provide possible explanations) for the spectacular bubbles and crashes seen in certain historical episodes, but they lack (like almost all the work before 1998 or so) a perspective in terms of the universal statistical features of financial time series.
physics.soc-ph↗
Ising, Schelling and Self-Organising Segregation
The similarities between phase separation in physics and residential segregation by preference in the Schelling model of 1971 are reviewed. Also, new computer simulations of asymmetric interactions different from the usual Ising model are presented, showing spontaneous magnetisation (= self-organising segregation) and in one case a sharp phase transition.
physics.soc-ph↗
Habitat width along a latitudinal gradient
We use the Chowdhury ecosystem model, one of the most complex agent-based ecological models, to test the latitude-niche breadth hypothesis, with regard to habitat width, i.e., whether tropical species generally have narrower habitats than high latitude ones. Application of the model has given realistic results in previous studies on latitudinal gradients in species diversity and Rapoport's rule. Here we show that tropical species with sufficient vagility and time to spread into adjacent habitats, tend to have wider habitats than high latitude ones, contradicting the latitude-niche breadth hypothesis.
q-bio.PE↗
Computer-Simulation des Wettbewerbs zwischen Sprachen
Recent computer simulations of the competition between thousands of languages are reviewed, and some new results on language families and language similarities are presented.
physics.soc-ph↗
Bit-strings and other modifications of Viviane model for language competition
The language competition model of Viviane de Oliveira et al is modified by associating with each language a string of 32 bits. Whenever a language changes in this Viviane model, also one randomly selected bit is flipped. If then only languages with different bit-strings are counted as different, the resulting size distribution of languages agrees with the empirically observed slightly asymmetric log-normal distribution. Several other modifications were also tried but either had more free parameters or agreed less well with reality.
physics.soc-ph↗
Optimization of hierarchical structures of information flow
The efficiency of a large hierarchical organisation is simulated on Barabasi-Albert networks, when each needed link leads to a loss of information. The optimum is found at a finite network size, corresponding to about five hierarchical layers, provided a cost for building the network is included in our optimization.
physics.soc-ph↗
Reexamination of scaling in the five-dimensional Ising model
In three dimensions, or more generally, below the upper critical dimension, scaling laws for critical phenomena seem well understood, for both infinite and for finite systems. Above the upper critical dimension of four, finite-size scaling is more difficult. Chen and Dohm predicted deviation in the universality of the Binder cumulants for three dimensions and more for the Ising model. This deviation occurs if the critical point T = Tc is approached along lines of constant A = L*L*(T-Tc)/Tc, then different exponents a function of system size L are found depending on whether this constant A is taken as positive, zero, or negative. This effect was confirmed by Monte Carlo simulations with Glauber and Creutz kinetics. Because of the importance of this effect and the unclear situation in the analogous percolation problem, we here reexamine the five-dimensional Glauber kinetics.
cond-mat.stat-mech↗
Extinction in genetic bit-string model with sexual recombination
We have analyzed the relations between the mutational pressure, recombination and selection pressure in the bit-string model with sexual reproduction. For specific sets of these parameters we have found three phase transitions with one phase where populations can survive. In this phase, recombination enhances the survival probability. Even if recombination is associated, to some extent, with additional mutations it could be advantageous to reproduction, indicating that the frequencies of recombinations and recombination-associated mutations can self-organize in Nature. Partitioning the diploid genome into pairs of chromosomes independently assorted during gamete production enables recombinations between groups of genes without the risk of mutations and is also advantageous for the strategy of sexual reproduction.
q-bio.PE↗
Test of Universality in Anisotropic 3D Ising Model
Chen and Dohm predicted theoretically in 2004 that the widely believed universality principle is violated in the Ising model on the simple cubic lattice with more than only six nearest neighbours. Schulte and Drope by Monte Carlo simulations found such violation, but not in the predicted direction. Selke and Shchur tested the square lattice. Here we check only this universality for the susceptibility ratio near the critical point. For this purpose we study first the standard Ising model on a simple cubic lattice with six nearest neighbours, then with six nearest and twelve next-nearest neighbours, and compare the results with the Chen-Dohm lattice of six nearest neighbours and only half of the twelve next-nearest neighbours. We do not confirm the violation of universality found by Schulte and Drope in the susceptibility ratio.
cond-mat.stat-mech↗
Food-chain competition influences gene's size
We have analysed an effect of the Bak-Sneppen predator-prey food-chain self-organization on nucleotide content of evolving species. In our model, genomes of the species under consideration have been represented by their nucleotide genomic fraction and we have applied two-parameter Kimura model of substitutions to include the changes of the fraction in time. The initial nucleotide fraction and substitution rates were decided with the help of random number generator. Deviation of the genomic nucleotide fraction from its equilibrium value was playing the role of the fitness parameter, $B$, in Bak-Sneppen model. Our finding is, that the higher is the value of the threshold fitness, during the evolution course, the more frequent are large fluctuations in number of species with strongly differentiated nucleotide content; and it is more often the case that the oldest species, which survive the food-chain competition, might have specific nucleotide fraction making possible generating long genes
q-bio.PE↗
Non-equilibrium and Irreversible Simulation of Competition among Languages
The bit-string model of Schulze and Stauffer (2005) is applied to non-equilibrium situations and then gives better agreement with the empirical distribution of language sizes. Here the size is the number of people having this language as mother tongue. In contrast, when equilibrium is combined with irreversible mutations of languages, one language always dominates and is spoken by at least 80 percent of the population.
physics.soc-ph↗