arXiv subjects

Dongrui Fan

Publications and source records attributed to Dongrui Fan.

At least 37 records · Page 2Linked to original sources

arXiv2024

GDR-HGNN: A Heterogeneous Graph Neural Networks Accelerator Frontend with Graph Decoupling and Recoupling

Heterogeneous Graph Neural Networks (HGNNs) have broadened the applicability of graph representation learning to heterogeneous graphs. However, the irregular memory access pattern of HGNNs leads to the buffer thrashing issue in HGNN accelerators. In this work, we identify an opportunity to address buffer thrashing in HGNN acceleration through an analysis of the topology of heterogeneous graphs. To harvest this opportunity, we propose a graph restructuring method and map it into a hardware frontend named GDR-HGNN. GDR-HGNN dynamically restructures the graph on the fly to enhance data locality for HGNN accelerators. Experimental results demonstrate that, with the assistance of GDR-HGNN, a leading HGNN accelerator achieves an average speedup of 14.6 times and 1.78 times compared to the state-of-the-art software framework running on A100 GPU and itself, respectively.

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arXiv2024

Revisiting Edge Perturbation for Graph Neural Network in Graph Data Augmentation and Attack

Edge perturbation is a basic method to modify graph structures. It can be categorized into two veins based on their effects on the performance of graph neural networks (GNNs), i.e., graph data augmentation and attack. Surprisingly, both veins of edge perturbation methods employ the same operations, yet yield opposite effects on GNNs' accuracy. A distinct boundary between these methods in using edge perturbation has never been clearly defined. Consequently, inappropriate perturbations may lead to undesirable outcomes, necessitating precise adjustments to achieve desired effects. Therefore, questions of ``why edge perturbation has a two-faced effect?'' and ``what makes edge perturbation flexible and effective?'' still remain unanswered. In this paper, we will answer these questions by proposing a unified formulation and establishing a clear boundary between two categories of edge perturbation methods. Specifically, we conduct experiments to elucidate the differences and similarities between these methods and theoretically unify the workflow of these methods by casting it to one optimization problem. Then, we devise Edge Priority Detector (EPD) to generate a novel priority metric, bridging these methods up in the workflow. Experiments show that EPD can make augmentation or attack flexibly and achieve comparable or superior performance to other counterparts with less time overhead.

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arXiv2023

A Comprehensive Survey on Distributed Training of Graph Neural Networks

Graph neural networks (GNNs) have been demonstrated to be a powerful algorithmic model in broad application fields for their effectiveness in learning over graphs. To scale GNN training up for large-scale and ever-growing graphs, the most promising solution is distributed training which distributes the workload of training across multiple computing nodes. At present, the volume of related research on distributed GNN training is exceptionally vast, accompanied by an extraordinarily rapid pace of publication. Moreover, the approaches reported in these studies exhibit significant divergence. This situation poses a considerable challenge for newcomers, hindering their ability to grasp a comprehensive understanding of the workflows, computational patterns, communication strategies, and optimization techniques employed in distributed GNN training. As a result, there is a pressing need for a survey to provide correct recognition, analysis, and comparisons in this field. In this paper, we provide a comprehensive survey of distributed GNN training by investigating various optimization techniques used in distributed GNN training. First, distributed GNN training is classified into several categories according to their workflows. In addition, their computational patterns and communication patterns, as well as the optimization techniques proposed by recent work are introduced. Second, the software frameworks and hardware platforms of distributed GNN training are also introduced for a deeper understanding. Third, distributed GNN training is compared with distributed training of deep neural networks, emphasizing the uniqueness of distributed GNN training. Finally, interesting issues and opportunities in this field are discussed.

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arXiv2023

A Survey of Graph Pre-processing Methods: From Algorithmic to Hardware Perspectives

Graph-related applications have experienced significant growth in academia and industry, driven by the powerful representation capabilities of graph. However, efficiently executing these applications faces various challenges, such as load imbalance, random memory access, etc. To address these challenges, researchers have proposed various acceleration systems, including software frameworks and hardware accelerators, all of which incorporate graph pre-processing (GPP). GPP serves as a preparatory step before the formal execution of applications, involving techniques such as sampling, reorder, etc. However, GPP execution often remains overlooked, as the primary focus is directed towards enhancing graph applications themselves. This oversight is concerning, especially considering the explosive growth of real-world graph data, where GPP becomes essential and even dominates system running overhead. Furthermore, GPP methods exhibit significant variations across devices and applications due to high customization. Unfortunately, no comprehensive work systematically summarizes GPP. To address this gap and foster a better understanding of GPP, we present a comprehensive survey dedicated to this area. We propose a double-level taxonomy of GPP, considering both algorithmic and hardware perspectives. Through listing relavent works, we illustrate our taxonomy and conduct a thorough analysis and summary of diverse GPP techniques. Lastly, we discuss challenges in GPP and potential future directions.

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arXiv2023

Simple and Efficient Heterogeneous Graph Neural Network

Heterogeneous graph neural networks (HGNNs) have powerful capability to embed rich structural and semantic information of a heterogeneous graph into node representations. Existing HGNNs inherit many mechanisms from graph neural networks (GNNs) over homogeneous graphs, especially the attention mechanism and the multi-layer structure. These mechanisms bring excessive complexity, but seldom work studies whether they are really effective on heterogeneous graphs. This paper conducts an in-depth and detailed study of these mechanisms and proposes Simple and Efficient Heterogeneous Graph Neural Network (SeHGNN). To easily capture structural information, SeHGNN pre-computes the neighbor aggregation using a light-weight mean aggregator, which reduces complexity by removing overused neighbor attention and avoiding repeated neighbor aggregation in every training epoch. To better utilize semantic information, SeHGNN adopts the single-layer structure with long metapaths to extend the receptive field, as well as a transformer-based semantic fusion module to fuse features from different metapaths. As a result, SeHGNN exhibits the characteristics of simple network structure, high prediction accuracy, and fast training speed. Extensive experiments on five real-world heterogeneous graphs demonstrate the superiority of SeHGNN over the state-of-the-arts on both accuracy and training speed.

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arXiv2022

Multi-node Acceleration for Large-scale GCNs

Limited by the memory capacity and compute power, singe-node graph convolutional neural network (GCN) accelerators cannot complete the execution of GCNs within a reasonable amount of time, due to the explosive size of graphs nowadays. Thus, large-scale GCNs call for a multi-node acceleration system (MultiAccSys) like TPU-Pod for large-scale neural networks. In this work, we aim to scale up single-node GCN accelerators to accelerate GCNs on large-scale graphs. We first identify the communication pattern and challenges of multi-node acceleration for GCNs on large-scale graphs. We observe that (1) coarse-grained communication patterns exist in the execution of GCNs in MultiAccSys, which introduces massive amount of redundant network transmissions and off-chip memory accesses; (2) overall, the acceleration of GCNs in MultiAccSys is bandwidth-bound and latency-tolerant. Guided by these two observations, we then propose MultiGCN, the first MultiAccSys for large-scale GCNs that trades network latency for network bandwidth. Specifically, by leveraging the network latency tolerance, we first propose a topology-aware multicast mechanism with a one put per multicast message-passing model to reduce transmissions and alleviate network bandwidth requirements. Second, we introduce a scatter-based round execution mechanism which cooperates with the multicast mechanism and reduces redundant off-chip memory accesses. Compared to the baseline MultiAccSys, MultiGCN achieves 4~12x speedup using only 28%~68% energy, while reducing 32% transmissions and 73% off-chip memory accesses on average. It not only achieves 2.5~8x speedup over the state-of-the-art multi-GPU solution, but also scales to large-scale graphs as opposed to single-node GCN accelerators.

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arXiv2022

Rethinking Efficiency and Redundancy in Training Large-scale Graphs

Large-scale graphs are ubiquitous in real-world scenarios and can be trained by Graph Neural Networks (GNNs) to generate representation for downstream tasks. Given the abundant information and complex topology of a large-scale graph, we argue that redundancy exists in such graphs and will degrade the training efficiency. Unfortunately, the model scalability severely restricts the efficiency of training large-scale graphs via vanilla GNNs. Despite recent advances in sampling-based training methods, sampling-based GNNs generally overlook the redundancy issue. It still takes intolerable time to train these models on large-scale graphs. Thereby, we propose to drop redundancy and improve efficiency of training large-scale graphs with GNNs, by rethinking the inherent characteristics in a graph. In this paper, we pioneer to propose a once-for-all method, termed DropReef, to drop the redundancy in large-scale graphs. Specifically, we first conduct preliminary experiments to explore potential redundancy in large-scale graphs. Next, we present a metric to quantify the neighbor heterophily of all nodes in a graph. Based on both experimental and theoretical analysis, we reveal the redundancy in a large-scale graph, i.e., nodes with high neighbor heterophily and a great number of neighbors. Then, we propose DropReef to detect and drop the redundancy in large-scale graphs once and for all, helping reduce the training time while ensuring no sacrifice in the model accuracy. To demonstrate the effectiveness of DropReef, we apply it to recent state-of-the-art sampling-based GNNs for training large-scale graphs, owing to the high precision of such models. With DropReef leveraged, the training efficiency of models can be greatly promoted. DropReef is highly compatible and is offline performed, benefiting the state-of-the-art sampling-based GNNs in the present and future to a significant extent.

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arXiv2022

Characterizing and Understanding HGNNs on GPUs

Heterogeneous graph neural networks (HGNNs) deliver powerful capacity in heterogeneous graph representation learning. The execution of HGNNs is usually accelerated by GPUs. Therefore, characterizing and understanding the execution pattern of HGNNs on GPUs is important for both software and hardware optimizations. Unfortunately, there is no detailed characterization effort of HGNN workloads on GPUs. In this paper, we characterize HGNN workloads at inference phase and explore the execution of HGNNs on GPU, to disclose the execution semantic and execution pattern of HGNNs. Given the characterization and exploration, we propose several useful guidelines for both software and hardware optimizations for the efficient execution of HGNNs on GPUs.

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arXiv2022

GNNSampler: Bridging the Gap between Sampling Algorithms of GNN and Hardware

Sampling is a critical operation in Graph Neural Network (GNN) training that helps reduce the cost. Previous literature has explored improving sampling algorithms via mathematical and statistical methods. However, there is a gap between sampling algorithms and hardware. Without consideration of hardware, algorithm designers merely optimize sampling at the algorithm level, missing the great potential of promoting the efficiency of existing sampling algorithms by leveraging hardware features. In this paper, we pioneer to propose a unified programming model for mainstream sampling algorithms, termed GNNSampler, covering the critical processes of sampling algorithms in various categories. Second, to leverage the hardware feature, we choose the data locality as a case study, and explore the data locality among nodes and their neighbors in a graph to alleviate irregular memory access in sampling. Third, we implement locality-aware optimizations in GNNSampler for various sampling algorithms to optimize the general sampling process. Finally, we emphatically conduct experiments on large graph datasets to analyze the relevance among training time, accuracy, and hardware-level metrics. Extensive experiments show that our method is universal to mainstream sampling algorithms and helps significantly reduce the training time, especially in large-scale graphs.

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arXiv2022

Survey on Graph Neural Network Acceleration: An Algorithmic Perspective

Graph neural networks (GNNs) have been a hot spot of recent research and are widely utilized in diverse applications. However, with the use of huger data and deeper models, an urgent demand is unsurprisingly made to accelerate GNNs for more efficient execution. In this paper, we provide a comprehensive survey on acceleration methods for GNNs from an algorithmic perspective. We first present a new taxonomy to classify existing acceleration methods into five categories. Based on the classification, we systematically discuss these methods and highlight their correlations. Next, we provide comparisons from aspects of the efficiency and characteristics of these methods. Finally, we suggest some promising prospects for future research.

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arXiv2022

Characterizing and Understanding Distributed GNN Training on GPUs

Graph neural network (GNN) has been demonstrated to be a powerful model in many domains for its effectiveness in learning over graphs. To scale GNN training for large graphs, a widely adopted approach is distributed training which accelerates training using multiple computing nodes. Maximizing the performance is essential, but the execution of distributed GNN training remains preliminarily understood. In this work, we provide an in-depth analysis of distributed GNN training on GPUs, revealing several significant observations and providing useful guidelines for both software optimization and hardware optimization.

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arXiv2022

Alleviating Datapath Conflicts and Design Centralization in Graph Analytics Acceleration

Previous graph analytics accelerators have achieved great improvement on throughput by alleviating irregular off-chip memory accesses. However, on-chip side datapath conflicts and design centralization have become the critical issues hindering further throughput improvement. In this paper, a general solution, Multiple-stage Decentralized Propagation network (MDP-network), is proposed to address these issues, inspired by the key idea of trading latency for throughput. Besides, a novel High throughput Graph analytics accelerator, HiGraph, is proposed by deploying MDP-network to address each issue in practice. The experiment shows that compared with state-of-the-art accelerator, HiGraph achieves up to 2.2x speedup (1.5x on average) as well as better scalability.

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arXiv2021

Sampling methods for efficient training of graph convolutional networks: A survey

Graph Convolutional Networks (GCNs) have received significant attention from various research fields due to the excellent performance in learning graph representations. Although GCN performs well compared with other methods, it still faces challenges. Training a GCN model for large-scale graphs in a conventional way requires high computation and storage costs. Therefore, motivated by an urgent need in terms of efficiency and scalability in training GCN, sampling methods have been proposed and achieved a significant effect. In this paper, we categorize sampling methods based on the sampling mechanisms and provide a comprehensive survey of sampling methods for efficient training of GCN. To highlight the characteristics and differences of sampling methods, we present a detailed comparison within each category and further give an overall comparative analysis for the sampling methods in all categories. Finally, we discuss some challenges and future research directions of the sampling methods.

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arXiv2021

Top-Related Meta-Learning Method for Few-Shot Object Detection

Many meta-learning methods are proposed for few-shot detection. However, previous most methods have two main problems, poor detection APs, and strong bias because of imbalance and insufficient datasets. Previous works mainly alleviate these issues by additional datasets, multi-relation attention mechanisms and sub-modules. However, they require more cost. In this work, for meta-learning, we find that the main challenges focus on related or irrelevant semantic features between categories. Therefore, based on semantic features, we propose a Top-C classification loss (i.e., TCL-C) for classification task and a category-based grouping mechanism for category-based meta-features obtained by the meta-model. The TCL-C exploits the true-label prediction and the most likely C-1 false classification predictions to improve detection performance on few-shot classes. According to similar appearance (i.e., visual appearance, shape, and limbs etc.) and environment in which objects often appear, the category-based grouping mechanism splits categories into disjoint groups to make similar semantic features more compact between categories within a group and obtain more significant difference between groups, alleviating the strong bias problem and further improving detection APs. The whole training consists of the base model and the fine-tuning phases. According to grouping mechanism, we group the meta-features vectors obtained by meta-model, so that the distribution difference between groups is obvious, and the one within each group is less. Extensive experiments on Pascal VOC dataset demonstrate that ours which combines the TCL-C with category-based grouping significantly outperforms previous state-of-the-art methods for few-shot detection. Compared with previous competitive baseline, ours improves detection APs by almost 4% for few-shot detection.

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arXiv2021

Tackling Variabilities in Autonomous Driving

The state-of-the-art driving automation system demands extreme computational resources to meet rigorous accuracy and latency requirements. Though emerging driving automation computing platforms are based on ASIC to provide better performance and power guarantee, building such an accelerator-based computing platform for driving automation still present challenges. First, the workloads mix and performance requirements exposed to driving automation system present significant variability. Second, with more cameras/sensors integrated in a future fully autonomous driving vehicle, a heterogeneous multi-accelerator architecture substrate is needed that requires a design space exploration for a new form of parallelism. In this work, we aim to extensively explore the above system design challenges and these challenges motivate us to propose a comprehensive framework that synergistically handles the heterogeneous hardware accelerator design principles, system design criteria, and task scheduling mechanism. Specifically, we propose a novel heterogeneous multi-core AI accelerator (HMAI) to provide the hardware substrate for the driving automation tasks with variability. We also define system design criteria to better utilize hardware resources and achieve increased throughput while satisfying the performance and energy restrictions. Finally, we propose a deep reinforcement learning (RL)-based task scheduling mechanism FlexAI, to resolve task mapping issue. Experimental results show that with FlexAI scheduling, basically 100% tasks in each driving route can be processed by HMAI within their required period to ensure safety, and FlexAI can also maximally reduce the breaking distance up to 96% as compared to typical heuristics and guided random-search-based algorithms.

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arXiv2021

RISC-NN: Use RISC, NOT CISC as Neural Network Hardware Infrastructure

Neural Networks (NN) have been proven to be powerful tools to analyze Big Data. However, traditional CPUs cannot achieve the desired performance and/or energy efficiency for NN applications. Therefore, numerous NN accelerators have been used or designed to meet these goals. These accelerators all fall into three categories: GPGPUs, ASIC NN Accelerators and CISC NN Accelerators. Though CISC NN Accelerators can achieve considerable smaller memory footprint than GPGPU thus improve energy efficiency; they still fail to provide same level of data reuse optimization achieved by ASIC NN Accelerators because of the inherited poor pragrammability of their CISC architecture. We argue that, for NN Accelerators, RISC is a better design choice than CISC, as is the case with general purpose processors. We propose RISC-NN, a novel many-core RISC-based NN accelerator that achieves high expressiveness and high parallelism and features strong programmability and low control-hardware costs. We show that, RISC-NN can implement all the necessary instructions of state-of-the-art CISC NN Accelerators; in the meantime, RISC-NN manages to achieve advanced optimization such as multiple-level data reuse and support for Sparse NN applications which previously only existed in ASIC NN Accelerators. Experiment results show that, RISC-NN achieves on average 11.88X performance efficiency compared with state-of-the-art Nvidia TITAN Xp GPGPU for various NN applications. RISC-NN also achieves on average 1.29X, 8.37X and 21.71X performance efficiency over CISC-based TPU in CNN, MLP and LSTM applications, respectively. Finally, RISC-NN can achieve additional 26.05% performance improvement and 33.13% energy reduction after applying pruning for Sparse NN applications.

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arXiv2020

Pixel-Semantic Revise of Position Learning A One-Stage Object Detector with A Shared Encoder-Decoder

Recently, many methods have been proposed for object detection. They cannot detect objects by semantic features, adaptively. In this work, according to channel and spatial attention mechanisms, we mainly analyze that different methods detect objects adaptively. Some state-of-the-art detectors combine different feature pyramids with many mechanisms to enhance multi-level semantic information. However, they require more cost. This work addresses that by an anchor-free detector with shared encoder-decoder with attention mechanism, extracting shared features. We consider features of different levels from backbone (e.g., ResNet-50) as the basis features. Then, we feed the features into a simple module, followed by a detector header to detect objects. Meantime, we use the semantic features to revise geometric locations, and the detector is a pixel-semantic revising of position. More importantly, this work analyzes the impact of different pooling strategies (e.g., mean, maximum or minimum) on multi-scale objects, and finds the minimum pooling improve detection performance on small objects better. Compared with state-of-the-art MNC based on ResNet-101 for the standard MSCOCO 2014 baseline, our method improves detection AP of 3.8%.

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arXiv2020

Video Face Recognition System: RetinaFace-mnet-faster and Secondary Search

Face recognition is widely used in the scene. However, different visual environments require different methods, and face recognition has a difficulty in complex environments. Therefore, this paper mainly experiments complex faces in the video. First, we design an image pre-processing module for fuzzy scene or under-exposed faces to enhance images. Our experimental results demonstrate that effective images pre-processing improves the accuracy of 0.11%, 0.2% and 1.4% on LFW, WIDER FACE and our datasets, respectively. Second, we propose RetinacFace-mnet-faster for detection and a confidence threshold specification for face recognition, reducing the lost rate. Our experimental results show that our RetinaFace-mnet-faster for 640*480 resolution on the Tesla P40 and single-thread improve speed of 16.7% and 70.2%, respectively. Finally, we design secondary search mechanism with HNSW to improve performance. Ours is suitable for large-scale datasets, and experimental results show that our method is 82% faster than the violent retrieval for the single-frame detection.

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