arXiv subjects

Dragomir Radev

Publications and source records attributed to Dragomir Radev.

At least 19 recordsLinked to original sources

arXiv2026

Deep Label-Wise Attentive Temporal Convolutional Networks Improve Medical Coding

Medical coding is the task of assigning a set of diagnosis and procedure codes for a hospitalization using recorded notes. It requires aggregating information from different parts of the text and focus to different sections for each individual code, making it a very difficult problem even for professional human coders. We model the task as a multi-label text classification problem. To overcome the mentioned difficulties, we propose a deep neural model consisting of a multi-layer temporal convolution network (TCN) followed by label-wise attention. While multi-layer TCN helps extract a global document representation with the ability to learn relations over very long sequences, label-specific attention mechanism allows the model to focus on different aspects of the same document for each individual label. Our method achieves significantly better F-1 scores (9% increase) compared to the previous state-of-the-art model, with a remarkable increase in recall score (28% increase), which we believe is the more important metric for a clinical decision support setting.

cs.CL↗

arXiv2024

P-FOLIO: Evaluating and Improving Logical Reasoning with Abundant Human-Written Reasoning Chains

Existing methods on understanding the capabilities of LLMs in logical reasoning rely on binary entailment classification or synthetically derived rationales, which are not sufficient for proper investigation of model's capabilities. We present P-FOLIO, a human-annotated dataset consisting of diverse and complex reasoning chains for a set of realistic logical reasoning stories also written by humans. P-FOLIO is collected with an annotation protocol that facilitates humans to annotate well-structured natural language proofs for first-order logic reasoning problems in a step-by-step manner. The number of reasoning steps in P-FOLIO span from 0 to 20. We further use P-FOLIO to evaluate and improve large-language-model (LLM) reasoning capabilities. We evaluate LLM reasoning capabilities at a fine granularity via single-step inference rule classification, with more diverse inference rules of more diverse and higher levels of complexities than previous works. Given that a single model-generated reasoning chain could take a completely different path than the human-annotated one, we sample multiple reasoning chains from a model and use pass@k metrics for evaluating the quality of model-generated reasoning chains. We show that human-written reasoning chains significantly boost the logical reasoning capabilities of LLMs via many-shot prompting and fine-tuning. Furthermore, fine-tuning Llama3-7B on P-FOLIO improves the model performance by 10% or more on three other out-of-domain logical reasoning datasets. We also conduct detailed analysis to show where most powerful LLMs fall short in reasoning. We will release the dataset and code publicly.

cs.AI↗

arXiv2024

On Learning to Summarize with Large Language Models as References

Recent studies have found that summaries generated by large language models (LLMs) are favored by human annotators over the original reference summaries in commonly used summarization datasets. Therefore, we study an LLM-as-reference learning setting for smaller text summarization models to investigate whether their performance can be substantially improved. To this end, we use LLMs as both oracle summary generators for standard supervised fine-tuning and oracle summary evaluators for efficient contrastive learning that leverages the LLMs' supervision signals. We conduct comprehensive experiments with source news articles and find that (1) summarization models trained under the LLM-as-reference setting achieve significant performance improvement in both LLM and human evaluations; (2) contrastive learning outperforms standard supervised fine-tuning under both low and high resource settings. Our experimental results also enable a meta-analysis of LLMs' summary evaluation capacities under a challenging setting, showing that LLMs are not well-aligned with human evaluators. Particularly, our expert human evaluation reveals remaining nuanced performance gaps between LLMs and our fine-tuned models, which LLMs fail to capture. Thus, we call for further studies into both the potential and challenges of using LLMs in summarization model development.

cs.CL↗

arXiv2024

Benchmarking Generation and Evaluation Capabilities of Large Language Models for Instruction Controllable Summarization

While large language models (LLMs) can already achieve strong performance on standard generic summarization benchmarks, their performance on more complex summarization task settings is less studied. Therefore, we benchmark LLMs on instruction controllable text summarization, where the model input consists of both a source article and a natural language requirement for desired summary characteristics. To this end, we curate an evaluation-only dataset for this task setting and conduct human evaluations of five LLM-based systems to assess their instruction-following capabilities in controllable summarization. We then benchmark LLM-based automatic evaluation for this task with 4 different evaluation protocols and 11 LLMs, resulting in 40 evaluation methods. Our study reveals that instruction controllable text summarization remains a challenging task for LLMs, since (1) all LLMs evaluated still make factual and other types of errors in their summaries; (2) no LLM-based evaluation methods can achieve a strong alignment with human annotators when judging the quality of candidate summaries; (3) different LLMs show large performance gaps in summary generation and evaluation capabilities. We make our collected benchmark InstruSum publicly available to facilitate future research in this direction.

cs.CL↗

arXiv2024

modeLing: A Novel Dataset for Testing Linguistic Reasoning in Language Models

We introduce modeLing, a novel benchmark of Linguistics Olympiad-style puzzles which tests few-shot reasoning in AI systems. Solving these puzzles necessitates inferring aspects of a language's grammatical structure from a small number of examples. Such puzzles provide a natural testbed for language models, as they require compositional generalization and few-shot inductive reasoning. Consisting solely of new puzzles written specifically for this work, modeLing has no risk of appearing in the training data of existing AI systems: this ameliorates the risk of data leakage, a potential confounder for many prior evaluations of reasoning. Evaluating several large open source language models and GPT on our benchmark, we observe non-negligible accuracy, demonstrating few-shot emergent reasoning ability which cannot merely be attributed to shallow memorization. However, imperfect model performance suggests that modeLing can be used to measure further progress in linguistic reasoning.

cs.CL↗

arXiv2024

Fair Abstractive Summarization of Diverse Perspectives

People from different social and demographic groups express diverse perspectives and conflicting opinions on a broad set of topics such as product reviews, healthcare, law, and politics. A fair summary should provide a comprehensive coverage of diverse perspectives without underrepresenting certain groups. However, current work in summarization metrics and Large Language Models (LLMs) evaluation has not explored fair abstractive summarization. In this paper, we systematically investigate fair abstractive summarization for user-generated data. We first formally define fairness in abstractive summarization as not underrepresenting perspectives of any groups of people, and we propose four reference-free automatic metrics by measuring the differences between target and source perspectives. We evaluate nine LLMs, including three GPT models, four LLaMA models, PaLM 2, and Claude, on six datasets collected from social media, online reviews, and recorded transcripts. Experiments show that both the model-generated and the human-written reference summaries suffer from low fairness. We conduct a comprehensive analysis of the common factors influencing fairness and propose three simple but effective methods to alleviate unfair summarization. Our dataset and code are available at https://github.com/psunlpgroup/FairSumm.

cs.CL↗

arXiv2024

A Call for Clarity in Beam Search: How It Works and When It Stops

Text generation with beam search has proven successful in a wide range of applications. We point out that, though largely overlooked in the literature, the commonly-used implementation of beam decoding (e.g., Hugging Face Transformers and fairseq) uses a first come, first served heuristic: it keeps a set of already completed sequences over time steps and stops when the size of this set reaches the beam size. Based on this finding, we introduce a patience factor, a simple modification to this beam decoding implementation, that generalizes the stopping criterion and provides flexibility to the depth of search. Empirical results demonstrate that adjusting this patience factor improves decoding performance of strong pretrained models on news text summarization and machine translation over diverse language pairs, with a negligible inference slowdown. Our approach only modifies one line of code and can be thus readily incorporated in any implementation. Further, we find that different versions of beam decoding result in large performance differences in summarization, demonstrating the need for clarity in specifying the beam search implementation in research work. Our code will be available upon publication.

cs.CL↗

arXiv2024

RealTime QA: What's the Answer Right Now?

We introduce REALTIME QA, a dynamic question answering (QA) platform that announces questions and evaluates systems on a regular basis (weekly in this version). REALTIME QA inquires about the current world, and QA systems need to answer questions about novel events or information. It therefore challenges static, conventional assumptions in open-domain QA datasets and pursues instantaneous applications. We build strong baseline models upon large pretrained language models, including GPT-3 and T5. Our benchmark is an ongoing effort, and this paper presents real-time evaluation results over the past year. Our experimental results show that GPT-3 can often properly update its generation results, based on newly-retrieved documents, highlighting the importance of up-to-date information retrieval. Nonetheless, we find that GPT-3 tends to return outdated answers when retrieved documents do not provide sufficient information to find an answer. This suggests an important avenue for future research: can an open-domain QA system identify such unanswerable cases and communicate with the user or even the retrieval module to modify the retrieval results? We hope that REALTIME QA will spur progress in instantaneous applications of question answering and beyond.

cs.CL↗

arXiv2024

HPE:Answering Complex Questions over Text by Hybrid Question Parsing and Execution

The dominant paradigm of textual question answering systems is based on end-to-end neural networks, which excels at answering natural language questions but falls short on complex ones. This stands in contrast to the broad adaptation of semantic parsing approaches over structured data sources (e.g., relational database, knowledge graphs), that convert natural language questions to logical forms and execute them with query engines. Towards combining the strengths of neural and symbolic methods, we propose a framework of question parsing and execution on textual QA. It comprises two central pillars: (1) We parse the question of varying complexity into an intermediate representation, named H-expression, which is composed of simple questions as the primitives and symbolic operations representing the relationships among them; (2) To execute the resulting H-expressions, we design a hybrid executor, which integrates the deterministic rules to translate the symbolic operations with a drop-in neural reader network to answer each decomposed simple question. Hence, the proposed framework can be viewed as a top-down question parsing followed by a bottom-up answer backtracking. The resulting H-expressions closely guide the execution process, offering higher precision besides better interpretability while still preserving the advantages of the neural readers for resolving its primitive elements. Our extensive experiments on MuSiQue, 2WikiQA, HotpotQA, and NQ show that the proposed parsing and hybrid execution framework outperforms existing approaches in supervised, few-shot, and zero-shot settings, while also effectively exposing its underlying reasoning process.

cs.CL↗

arXiv2023

Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation

This study introduces Ascle, a pioneering natural language processing (NLP) toolkit designed for medical text generation. Ascle is tailored for biomedical researchers and healthcare professionals with an easy-to-use, all-in-one solution that requires minimal programming expertise. For the first time, Ascle evaluates and provides interfaces for the latest pre-trained language models, encompassing four advanced and challenging generative functions: question-answering, text summarization, text simplification, and machine translation. In addition, Ascle integrates 12 essential NLP functions, along with query and search capabilities for clinical databases. The toolkit, its models, and associated data are publicly available via https://github.com/Yale-LILY/MedGen.

cs.CL↗

arXiv2023

Towards Interpretable and Efficient Automatic Reference-Based Summarization Evaluation

Interpretability and efficiency are two important considerations for the adoption of neural automatic metrics. In this work, we develop strong-performing automatic metrics for reference-based summarization evaluation, based on a two-stage evaluation pipeline that first extracts basic information units from one text sequence and then checks the extracted units in another sequence. The metrics we developed include two-stage metrics that can provide high interpretability at both the fine-grained unit level and summary level, and one-stage metrics that achieve a balance between efficiency and interpretability. We make the developed tools publicly available at https://github.com/Yale-LILY/AutoACU.

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arXiv2023

QTSumm: Query-Focused Summarization over Tabular Data

People primarily consult tables to conduct data analysis or answer specific questions. Text generation systems that can provide accurate table summaries tailored to users' information needs can facilitate more efficient access to relevant data insights. Motivated by this, we define a new query-focused table summarization task, where text generation models have to perform human-like reasoning and analysis over the given table to generate a tailored summary. We introduce a new benchmark named QTSumm for this task, which contains 7,111 human-annotated query-summary pairs over 2,934 tables covering diverse topics. We investigate a set of strong baselines on QTSumm, including text generation, table-to-text generation, and large language models. Experimental results and manual analysis reveal that the new task presents significant challenges in table-to-text generation for future research. Moreover, we propose a new approach named ReFactor, to retrieve and reason over query-relevant information from tabular data to generate several natural language facts. Experimental results demonstrate that ReFactor can bring improvements to baselines by concatenating the generated facts to the model input. Our data and code are publicly available at https://github.com/yale-nlp/QTSumm.

cs.CL↗

arXiv2023

Rethinking Explaining Graph Neural Networks via Non-parametric Subgraph Matching

The success of graph neural networks (GNNs) provokes the question about explainability: ``Which fraction of the input graph is the most determinant of the prediction?'' Particularly, parametric explainers prevail in existing approaches because of their more robust capability to decipher the black-box (i.e., target GNNs). In this paper, based on the observation that graphs typically share some common motif patterns, we propose a novel non-parametric subgraph matching framework, dubbed MatchExplainer, to explore explanatory subgraphs. It couples the target graph with other counterpart instances and identifies the most crucial joint substructure by minimizing the node corresponding-based distance. Moreover, we note that present graph sampling or node-dropping methods usually suffer from the false positive sampling problem. To alleviate this issue, we designed a new augmentation paradigm named MatchDrop. It takes advantage of MatchExplainer to fix the most informative portion of the graph and merely operates graph augmentations on the rest less informative part. Extensive experiments on synthetic and real-world datasets show the effectiveness of our MatchExplainer by outperforming all state-of-the-art parametric baselines with significant margins. Results also demonstrate that MatchDrop is a general scheme to be equipped with GNNs for enhanced performance. The code is available at: https://github.com/smiles724/MatchExplainer.

cs.LG↗

arXiv2023

Integration of Pre-trained Protein Language Models into Geometric Deep Learning Networks

Geometric deep learning has recently achieved great success in non-Euclidean domains, and learning on 3D structures of large biomolecules is emerging as a distinct research area. However, its efficacy is largely constrained due to the limited quantity of structural data. Meanwhile, protein language models trained on substantial 1D sequences have shown burgeoning capabilities with scale in a broad range of applications. Several previous studies consider combining these different protein modalities to promote the representation power of geometric neural networks, but fail to present a comprehensive understanding of their benefits. In this work, we integrate the knowledge learned by well-trained protein language models into several state-of-the-art geometric networks and evaluate a variety of protein representation learning benchmarks, including protein-protein interface prediction, model quality assessment, protein-protein rigid-body docking, and binding affinity prediction. Our findings show an overall improvement of 20% over baselines. Strong evidence indicates that the incorporation of protein language models' knowledge enhances geometric networks' capacity by a significant margin and can be generalized to complex tasks.

cs.LG↗

arXiv2023

On Improving Summarization Factual Consistency from Natural Language Feedback

Despite the recent progress in language generation models, their outputs may not always meet user expectations. In this work, we study whether informational feedback in natural language can be leveraged to improve generation quality and user preference alignment. To this end, we consider factual consistency in summarization, the quality that the summary should only contain information supported by the input documents, as the user-expected preference. We collect a high-quality dataset, DeFacto, containing human demonstrations and informational natural language feedback consisting of corrective instructions, edited summaries, and explanations with respect to the factual consistency of the summary. Using our dataset, we study three natural language generation tasks: (1) editing a summary by following the human feedback, (2) generating human feedback for editing the original summary, and (3) revising the initial summary to correct factual errors by generating both the human feedback and edited summary. We show that DeFacto can provide factually consistent human-edited summaries and further insights into summarization factual consistency thanks to its informational natural language feedback. We further demonstrate that fine-tuned language models can leverage our dataset to improve the summary factual consistency, while large language models lack the zero-shot learning ability in our proposed tasks that require controllable text generation.

cs.CL↗

arXiv2023

L2CEval: Evaluating Language-to-Code Generation Capabilities of Large Language Models

Recently, large language models (LLMs), especially those that are pretrained on code, have demonstrated strong capabilities in generating programs from natural language inputs in a few-shot or even zero-shot manner. Despite promising results, there is a notable lack of a comprehensive evaluation of these models language-to-code generation capabilities. Existing studies often focus on specific tasks, model architectures, or learning paradigms, leading to a fragmented understanding of the overall landscape. In this work, we present L2CEval, a systematic evaluation of the language-to-code generation capabilities of LLMs on 7 tasks across the domain spectrum of semantic parsing, math reasoning and Python programming, analyzing the factors that potentially affect their performance, such as model size, pretraining data, instruction tuning, and different prompting methods. In addition to assessing model performance, we measure confidence calibration for the models and conduct human evaluations of the output programs. This enables us to identify and analyze the typical failure modes across various tasks and models. L2CEval offers a comprehensive understanding of the capabilities and limitations of LLMs in language-to-code generation. We also release the evaluation framework and all model outputs, hoping to lay the groundwork for further future research in this domain.

cs.CL↗

arXiv2023

LEVER: Learning to Verify Language-to-Code Generation with Execution

The advent of large language models trained on code (code LLMs) has led to significant progress in language-to-code generation. State-of-the-art approaches in this area combine LLM decoding with sample pruning and reranking using test cases or heuristics based on the execution results. However, it is challenging to obtain test cases for many real-world language-to-code applications, and heuristics cannot well capture the semantic features of the execution results, such as data type and value range, which often indicates the correctness of the program. In this work, we propose LEVER, a simple approach to improve language-to-code generation by learning to verify the generated programs with their execution results. Specifically, we train verifiers to determine whether a program sampled from the LLMs is correct or not based on the natural language input, the program itself and its execution results. The sampled programs are reranked by combining the verification score with the LLM generation probability, and marginalizing over programs with the same execution results. On four datasets across the domains of table QA, math QA and basic Python programming, LEVER consistently improves over the base code LLMs(4.6% to 10.9% with code-davinci-002) and achieves new state-of-the-art results on all of them.

cs.LG↗

arXiv2023

EHRKit: A Python Natural Language Processing Toolkit for Electronic Health Record Texts

The Electronic Health Record (EHR) is an essential part of the modern medical system and impacts healthcare delivery, operations, and research. Unstructured text is attracting much attention despite structured information in the EHRs and has become an exciting research field. The success of the recent neural Natural Language Processing (NLP) method has led to a new direction for processing unstructured clinical notes. In this work, we create a python library for clinical texts, EHRKit. This library contains two main parts: MIMIC-III-specific functions and tasks specific functions. The first part introduces a list of interfaces for accessing MIMIC-III NOTEEVENTS data, including basic search, information retrieval, and information extraction. The second part integrates many third-party libraries for up to 12 off-shelf NLP tasks such as named entity recognition, summarization, machine translation, etc.

cs.CL↗