arXiv subjects

Eibe Frank

Publications and source records attributed to Eibe Frank.

35 records · Page 2Linked to original sources

arXiv2021

Deep Learning in Diabetic Foot Ulcers Detection: A Comprehensive Evaluation

There has been a substantial amount of research involving computer methods and technology for the detection and recognition of diabetic foot ulcers (DFUs), but there is a lack of systematic comparisons of state-of-the-art deep learning object detection frameworks applied to this problem. DFUC2020 provided participants with a comprehensive dataset consisting of 2,000 images for training and 2,000 images for testing. This paper summarises the results of DFUC2020 by comparing the deep learning-based algorithms proposed by the winning teams: Faster R-CNN, three variants of Faster R-CNN and an ensemble method; YOLOv3; YOLOv5; EfficientDet; and a new Cascade Attention Network. For each deep learning method, we provide a detailed description of model architecture, parameter settings for training and additional stages including pre-processing, data augmentation and post-processing. We provide a comprehensive evaluation for each method. All the methods required a data augmentation stage to increase the number of images available for training and a post-processing stage to remove false positives. The best performance was obtained from Deformable Convolution, a variant of Faster R-CNN, with a mean average precision (mAP) of 0.6940 and an F1-Score of 0.7434. Finally, we demonstrate that the ensemble method based on different deep learning methods can enhanced the F1-Score but not the mAP.

cs.CV↗

arXiv2021

DFUC2020: Analysis Towards Diabetic Foot Ulcer Detection

Every 20 seconds, a limb is amputated somewhere in the world due to diabetes. This is a global health problem that requires a global solution. The MICCAI challenge discussed in this paper, which concerns the automated detection of diabetic foot ulcers using machine learning techniques, will accelerate the development of innovative healthcare technology to address this unmet medical need. In an effort to improve patient care and reduce the strain on healthcare systems, recent research has focused on the creation of cloud-based detection algorithms. These can be consumed as a service by a mobile app that patients (or a carer, partner or family member) could use themselves at home to monitor their condition and to detect the appearance of a diabetic foot ulcer (DFU). Collaborative work between Manchester Metropolitan University, Lancashire Teaching Hospital and the Manchester University NHS Foundation Trust has created a repository of 4,000 DFU images for the purpose of supporting research toward more advanced methods of DFU detection. Based on a joint effort involving the lead scientists of the UK, US, India and New Zealand, this challenge will solicit original work, and promote interactions between researchers and interdisciplinary collaborations. This paper presents a dataset description and analysis, assessment methods, benchmark algorithms and initial evaluation results. It facilitates the challenge by providing useful insights into state-of-the-art and ongoing research. This grand challenge takes on even greater urgency in a peri and post-pandemic period, where stresses on resource utilization will increase the need for technology that allows people to remain active, healthy and intact in their home.

cs.CV↗

arXiv2020

Regularisation of Neural Networks by Enforcing Lipschitz Continuity

We investigate the effect of explicitly enforcing the Lipschitz continuity of neural networks with respect to their inputs. To this end, we provide a simple technique for computing an upper bound to the Lipschitz constant---for multiple $p$-norms---of a feed forward neural network composed of commonly used layer types. Our technique is then used to formulate training a neural network with a bounded Lipschitz constant as a constrained optimisation problem that can be solved using projected stochastic gradient methods. Our evaluation study shows that the performance of the resulting models exceeds that of models trained with other common regularisers. We also provide evidence that the hyperparameters are intuitive to tune, demonstrate how the choice of norm for computing the Lipschitz constant impacts the resulting model, and show that the performance gains provided by our method are particularly noticeable when only a small amount of training data is available.

stat.ML↗

arXiv2020

Adaptive XGBoost for Evolving Data Streams

Boosting is an ensemble method that combines base models in a sequential manner to achieve high predictive accuracy. A popular learning algorithm based on this ensemble method is eXtreme Gradient Boosting (XGB). We present an adaptation of XGB for classification of evolving data streams. In this setting, new data arrives over time and the relationship between the class and the features may change in the process, thus exhibiting concept drift. The proposed method creates new members of the ensemble from mini-batches of data as new data becomes available. The maximum ensemble size is fixed, but learning does not stop when this size is reached because the ensemble is updated on new data to ensure consistency with the current concept. We also explore the use of concept drift detection to trigger a mechanism to update the ensemble. We test our method on real and synthetic data with concept drift and compare it against batch-incremental and instance-incremental classification methods for data streams.

cs.LG↗

arXiv2020

Classifier Chains: A Review and Perspectives

The family of methods collectively known as classifier chains has become a popular approach to multi-label learning problems. This approach involves linking together off-the-shelf binary classifiers in a chain structure, such that class label predictions become features for other classifiers. Such methods have proved flexible and effective and have obtained state-of-the-art empirical performance across many datasets and multi-label evaluation metrics. This performance led to further studies of how exactly it works, and how it could be improved, and in the recent decade numerous studies have explored classifier chains mechanisms on a theoretical level, and many improvements have been made to the training and inference procedures, such that this method remains among the state-of-the-art options for multi-label learning. Given this past and ongoing interest, which covers a broad range of applications and research themes, the goal of this work is to provide a review of classifier chains, a survey of the techniques and extensions provided in the literature, as well as perspectives for this approach in the domain of multi-label classification in the future. We conclude positively, with a number of recommendations for researchers and practitioners, as well as outlining a number of areas for future research.

cs.LG↗

arXiv2020

Embedding Java Classes with code2vec: Improvements from Variable Obfuscation

Automatic source code analysis in key areas of software engineering, such as code security, can benefit from Machine Learning (ML). However, many standard ML approaches require a numeric representation of data and cannot be applied directly to source code. Thus, to enable ML, we need to embed source code into numeric feature vectors while maintaining the semantics of the code as much as possible. code2vec is a recently released embedding approach that uses the proxy task of method name prediction to map Java methods to feature vectors. However, experimentation with code2vec shows that it learns to rely on variable names for prediction, causing it to be easily fooled by typos or adversarial attacks. Moreover, it is only able to embed individual Java methods and cannot embed an entire collection of methods such as those present in a typical Java class, making it difficult to perform predictions at the class level (e.g., for the identification of malicious Java classes). Both shortcomings are addressed in the research presented in this paper. We investigate the effect of obfuscating variable names during the training of a code2vec model to force it to rely on the structure of the code rather than specific names and consider a simple approach to creating class-level embeddings by aggregating sets of method embeddings. Our results, obtained on a challenging new collection of source-code classification problems, indicate that obfuscating variable names produces an embedding model that is both impervious to variable naming and more accurately reflects code semantics. The datasets, models, and code are shared for further ML research on source code.

cs.LG↗

arXiv2019

Stochastic Gradient Trees

We present an algorithm for learning decision trees using stochastic gradient information as the source of supervision. In contrast to previous approaches to gradient-based tree learning, our method operates in the incremental learning setting rather than the batch learning setting, and does not make use of soft splits or require the construction of a new tree for every update. We demonstrate how one can apply these decision trees to different problems by changing only the loss function, using classification, regression, and multi-instance learning as example applications. In the experimental evaluation, our method performs similarly to standard incremental classification trees, outperforms state of the art incremental regression trees, and achieves comparable performance with batch multi-instance learning methods.

stat.ML↗

arXiv2018

Improving Naive Bayes for Regression with Optimised Artificial Surrogate Data

Can we evolve better training data for machine learning algorithms? To investigate this question we use population-based optimisation algorithms to generate artificial surrogate training data for naive Bayes for regression. We demonstrate that the generalisation performance of naive Bayes for regression models is enhanced by training them on the artificial data as opposed to the real data. These results are important for two reasons. Firstly, naive Bayes models are simple and interpretable but frequently underperform compared to more complex "black box" models, and therefore new methods of enhancing accuracy are called for. Secondly, the idea of using the real training data indirectly in the construction of the artificial training data, as opposed to directly for model training, is a novel twist on the usual machine learning paradigm.

cs.AI↗

arXiv2018

On the Calibration of Nested Dichotomies for Large Multiclass Tasks

Nested dichotomies are used as a method of transforming a multiclass classification problem into a series of binary problems. A tree structure is induced that recursively splits the set of classes into subsets, and a binary classification model learns to discriminate between the two subsets of classes at each node. In this paper, we demonstrate that these nested dichotomies typically exhibit poor probability calibration, even when the base binary models are well calibrated. We also show that this problem is exacerbated when the binary models are poorly calibrated. We discuss the effectiveness of different calibration strategies and show that accuracy and log-loss can be significantly improved by calibrating both the internal base models and the full nested dichotomy structure, especially when the number of classes is high.

cs.LG↗

arXiv2018

Probability Calibration Trees

Obtaining accurate and well calibrated probability estimates from classifiers is useful in many applications, for example, when minimising the expected cost of classifications. Existing methods of calibrating probability estimates are applied globally, ignoring the potential for improvements by applying a more fine-grained model. We propose probability calibration trees, a modification of logistic model trees that identifies regions of the input space in which different probability calibration models are learned to improve performance. We compare probability calibration trees to two widely used calibration methods---isotonic regression and Platt scaling---and show that our method results in lower root mean squared error on average than both methods, for estimates produced by a variety of base learners.

cs.LG↗

arXiv2018

Ensembles of Nested Dichotomies with Multiple Subset Evaluation

A system of nested dichotomies is a method of decomposing a multi-class problem into a collection of binary problems. Such a system recursively applies binary splits to divide the set of classes into two subsets, and trains a binary classifier for each split. Many methods have been proposed to perform this split, each with various advantages and disadvantages. In this paper, we present a simple, general method for improving the predictive performance of nested dichotomies produced by any subset selection techniques that employ randomness to construct the subsets. We provide a theoretical expectation for performance improvements, as well as empirical results showing that our method improves the root mean squared error of nested dichotomies, regardless of whether they are employed as an individual model or in an ensemble setting.

cs.LG↗

arXiv2018

MaxGain: Regularisation of Neural Networks by Constraining Activation Magnitudes

Effective regularisation of neural networks is essential to combat overfitting due to the large number of parameters involved. We present an empirical analogue to the Lipschitz constant of a feed-forward neural network, which we refer to as the maximum gain. We hypothesise that constraining the gain of a network will have a regularising effect, similar to how constraining the Lipschitz constant of a network has been shown to improve generalisation. A simple algorithm is provided that involves rescaling the weight matrix of each layer after each parameter update. We conduct a series of studies on common benchmark datasets, and also a novel dataset that we introduce to enable easier significance testing for experiments using convolutional networks. Performance on these datasets compares favourably with other common regularisation techniques.

stat.ML↗

arXiv2018

XGBoost: Scalable GPU Accelerated Learning

We describe the multi-GPU gradient boosting algorithm implemented in the XGBoost library (https://github.com/dmlc/xgboost). Our algorithm allows fast, scalable training on multi-GPU systems with all of the features of the XGBoost library. We employ data compression techniques to minimise the usage of scarce GPU memory while still allowing highly efficient implementation. Using our algorithm we show that it is possible to process 115 million training instances in under three minutes on a publicly available cloud computing instance. The algorithm is implemented using end-to-end GPU parallelism, with prediction, gradient calculation, feature quantisation, decision tree construction and evaluation phases all computed on device.

cs.LG↗

arXiv2016

Building Ensembles of Adaptive Nested Dichotomies with Random-Pair Selection

A system of nested dichotomies is a method of decomposing a multi-class problem into a collection of binary problems. Such a system recursively splits the set of classes into two subsets, and trains a binary classifier to distinguish between each subset. Even though ensembles of nested dichotomies with random structure have been shown to perform well in practice, using a more sophisticated class subset selection method can be used to improve classification accuracy. We investigate an approach to this problem called random-pair selection, and evaluate its effectiveness compared to other published methods of subset selection. We show that our method outperforms other methods in many cases when forming ensembles of nested dichotomies, and is at least on par in all other cases.

stat.ML↗

arXiv2015

Accurate photometric redshift probability density estimation - method comparison and application

We introduce an ordinal classification algorithm for photometric redshift estimation, which significantly improves the reconstruction of photometric redshift probability density functions (PDFs) for individual galaxies and galaxy samples. As a use case we apply our method to CFHTLS galaxies. The ordinal classification algorithm treats distinct redshift bins as ordered values, which improves the quality of photometric redshift PDFs, compared with non-ordinal classification architectures. We also propose a new single value point estimate of the galaxy redshift, that can be used to estimate the full redshift PDF of a galaxy sample. This method is competitive in terms of accuracy with contemporary algorithms, which stack the full redshift PDFs of all galaxies in the sample, but requires orders of magnitudes less storage space. The methods described in this paper greatly improve the log-likelihood of individual object redshift PDFs, when compared with a popular Neural Network code (ANNz). In our use case, this improvement reaches 50\% for high redshift objects ($z \geq 0.75$). We show that using these more accurate photometric redshift PDFs will lead to a reduction in the systematic biases by up to a factor of four, when compared with less accurate PDFs obtained from commonly used methods. The cosmological analyses we examine and find improvement upon are the following: gravitational lensing cluster mass estimates, modelling of angular correlation functions, and modelling of cosmic shear correlation functions.

astro-ph.CO↗

arXiv2012

Locally Weighted Naive Bayes

Despite its simplicity, the naive Bayes classifier has surprised machine learning researchers by exhibiting good performance on a variety of learning problems. Encouraged by these results, researchers have looked to overcome naive Bayes primary weakness - attribute independence - and improve the performance of the algorithm. This paper presents a locally weighted version of naive Bayes that relaxes the independence assumption by learning local models at prediction time. Experimental results show that locally weighted naive Bayes rarely degrades accuracy compared to standard naive Bayes and, in many cases, improves accuracy dramatically. The main advantage of this method compared to other techniques for enhancing naive Bayes is its conceptual and computational simplicity.

cs.LG↗

arXiv1999

KEA: Practical Automatic Keyphrase Extraction

Keyphrases provide semantic metadata that summarize and characterize documents. This paper describes Kea, an algorithm for automatically extracting keyphrases from text. Kea identifies candidate keyphrases using lexical methods, calculates feature values for each candidate, and uses a machine-learning algorithm to predict which candidates are good keyphrases. The machine learning scheme first builds a prediction model using training documents with known keyphrases, and then uses the model to find keyphrases in new documents. We use a large test corpus to evaluate Kea's effectiveness in terms of how many author-assigned keyphrases are correctly identified. The system is simple, robust, and publicly available.

cs.DL↗