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Fabian Brandt-Tumescheit

Publications and source records attributed to Fabian Brandt-Tumescheit.

2 recordsLinked to original sources

A Fully-dynamic Approximation Algorithm for Maximum Weight b-Matchings in Graphs

Matching nodes in a graph G = (V, E) is a well-studied algorithmic problem with many applications. The b-matching problem is a generalizati on that allows to match a node with up to b neighbors. This allows more flexible connectivity patterns whenever vertices may have multiple associations. The algorithm b-suitor [Khan et al., SISC2016] is able to compute a (1/2)-approximation of a maximum weight b-matching in O(|E|) time. Since real-world graphs often change over time, fast dynamic methods for b-matching optimization are desirable. In this work, we propose Dyn-b-suitor, a dynamic algorithm for the weighted b-matching problem. As a non-trivial extension to the dynamic Suitor algorithm for 1-matchings [Angriman et al., JEA 2022], our approach computes (1/2)-approximate b-matchings by identifying and updating affected vertices without static recomputation. Our proposed algorithm is fully-dynamic, i. e., it supports both edge insertions and deletions, and we prove that it computes the same solution as its static counterpart. In extensive experiments on real-world benchmark graphs and generated instances, our dynamic algorithm yields significant savings compared to the sequential b-suitor, e. g., for batch updates with $10^3$ edges with an average acceleration factor of $10^3$. When comparing our sequential dynamic algorithm with the parallel (static) b-suitor on a 128-core machine, our dynamic algorithm is still $59$x to $10^4$ faster.

cs.DS↗

Interactive Visualization of Protein RINs using NetworKit in the Cloud

Network analysis has been applied in diverse application domains. In this paper, we consider an example from protein dynamics, specifically residue interaction networks (RINs). In this context, we use NetworKit -- an established package for network analysis -- to build a cloud-based environment that enables domain scientists to run their visualization and analysis workflows on large compute servers, without requiring extensive programming and/or system administration knowledge. To demonstrate the versatility of this approach, we use it to build a custom Jupyter-based widget for RIN visualization. In contrast to existing RIN visualization approaches, our widget can easily be customized through simple modifications of Python code, while both supporting a good feature set and providing near real-time speed. It is also easily integrated into analysis pipelines (e.g., that use Python to feed RIN data into downstream machine learning tasks).

cs.SI↗