arXiv subjects

Federico Toschi

Publications and source records attributed to Federico Toschi.

At least 109 records · Page 6Linked to original sources

arXiv2016

Finite-size effects on bacterial population expansion under controlled fow conditions

The expansion of biological species in natural environments is usually described as the combined effect of individual spatial dispersal and growth. In the case of aquatic ecosystems flow transport can also be extremely relevant as an extra, advection induced, dispersal factor. There is a lack of reproducible experimental studies on biological fronts of living organisms in controlled streaming habitats. It is thus not clear if, and to which extent, the current theoretical and experimental knowledge on advective-reactive-diffusive fronts for chemical reactions can also apply to the expansion of biological populations. We designed and assembled a dedicated microfluidic device to control and quantify the expansion of populations of $E.coli$ bacteria under both co-flowing and counter-flowing conditions, measuring the front speed at varying intensity of the imposed flow. At variance with respect to the case of autocatalytic reactions, we measure that almost irrespective of the counter-flow velocity, the front speed remains finite at a constant positive value. A simple model incorporating growth, dispersion and drift on finite-size hard beads allows to explain this finding as due to a finite volume effect of the bacteria. This indicates that models based on the Fisher-Kolmogorov-Petrovsky-Piscounov equation (FKPP) that ignore the finite size of organisms may be inaccurate to describe the physics of spatial growth dynamics of bacteria.

physics.bio-ph↗

arXiv2016

Continuous measurements of real-life bidirectional pedestrian flows on a wide walkway

Employing partially overlapping overhead \kinectTMS sensors and automatic pedestrian tracking algorithms we recorded the crowd traffic in a rectilinear section of the main walkway of Eindhoven train station on a 24/7 basis. Beside giving access to the train platforms (it passes underneath the railways), the walkway plays an important connection role in the city. Several crowding scenarios occur during the day, including high- and low-density dynamics in uni- and bi-directional regimes. In this paper we discuss our recording technique and we illustrate preliminary data analyses. Via fundamental diagrams-like representations we report pedestrian velocities and fluxes vs. pedestrian density. Considering the density range $0$ - $1.1\,$ped/m$^2$, we find that at densities lower than $0.8\,$ped/m$^2$ pedestrians in unidirectional flows walk faster than in bidirectional regimes. On the opposite, velocities and fluxes for even bidirectional flows are higher above $0.8\,$ped/m$^2$.

physics.soc-ph↗

arXiv2016

Eulerian vs. Lagrangian analyses of pedestrian dynamics asymmetries in a staircase landing

Real-life, out-of-laboratory, measurements of pedestrian movements allow extensive and fully-resolved statistical analyses. However, data acquisition in real-life is subjected to the wide heterogeneity that characterizes crowd flows over time. Disparate flow conditions, such as co-flows and counter-flows at low and at high pedestrian densities, typically follow randomly one another. When analysing the data in order to study the dynamics and behaviour of pedestrians it is crucial to be able disentangle and to properly select (query) data from statistically homogeneous flow conditions in order to avoid spurious statistics and to enable qualitative comparisons. In this paper we extend our previous analysis on the asymmetric pedestrian dynamics on a staircase landing, where we collected a large statistical database of measurements from ad hoc continuous recordings. This contribution has a two-fold aim: first, method-wise, we discuss two possible approaches to query experimental datasets for homogeneous flow conditions. For given flow conditions, we can either agglomerate measurements on a time-frame basis (Eulerian queries) or on a trajectory basis (Lagrangian queries). Second, we employ these two different perspectives to further explore asymmetries in the pedestrian dynamics in our measurement site. We report cross-comparisons of statistics of pedestrian positions, velocities and accelerations vs. flow conditions as well as vs. Eulerian or Lagrangian approach.

physics.soc-ph↗

arXiv2016

Earthquake statistics inferred from plastic events in soft-glassy materials

We propose a new approach for generating synthetic earthquake catalogues based on the physics of soft glasses. The continuum approach produces yield-stress materials based on Lattice-Boltzmann simulations. We show that, if the material is stimulated below yield stress, plastic events occur, which have strong similarities with seismic events. Based on a suitable definition of displacement in the continuum, we show that the plastic events obey a Gutenberg-Richter law with exponents similar to those for real earthquakes. We further find that average acceleration, energy release, stress drop and recurrence times scale with the same exponent. The approach is fully self-consistent and all quantities can be calculated at all scales without the need of ad hoc friction or statistical laws. We therefore suggest that our approach may lead to new insight into understanding of the physics connecting the micro and macro scale of earthquakes.

physics.geo-ph↗

arXiv2016

A Lagrangian model of copepod dynamics: Clustering by escape jumps in turbulence

Planktonic copepods are small crustaceans that have the ability to swim by quick powerful jumps. Such an aptness is used to escape from high shear regions, which may be caused either by flow per- turbations, produced by a large predator (i.e., fish larvae), or by the inherent highly turbulent dynamics of the ocean. Through a combined experimental and numerical study, we investigate the impact of jumping behaviour on the small-scale patchiness of copepods in a turbulent environment. Recorded velocity tracks of copepods displaying escape response jumps in still water are here used to define and tune a Lagrangian Copepod (LC) model. The model is further employed to simulate the behaviour of thousands of copepods in a fully developed hydrodynamic turbulent flow obtained by direct numerical simulation of the Navier-Stokes equations. First, we show that the LC velocity statistics is in qualitative agreement with available experimental observations of copepods in tur- bulence. Second, we quantify the clustering of LC, via the fractal dimension $D_2$. We show that $D_2$ can be as low as ~ 2.3 and that it critically depends on the shear-rate sensitivity of the proposed LC model, in particular it exhibits a minimum in a narrow range of shear-rate values. We further investigate the effect of jump intensity, jump orientation and geometrical aspect ratio of the copepods on the small-scale spatial distribution. At last, possible ecological implications of the observed clustering on encounter rates and mating success are discussed

physics.flu-dyn↗

arXiv2016

Turbulence on a Fractal Fourier set

A novel investigation of the nature of intermittency in incompressible, homogeneous and isotropic turbulence is performed by a numerical study of the Navier-Stokes equations constrained on a fractal Fourier set. The robustness of the energy transfer and of the vortex stretching mechanisms is tested by changing the fractal dimension, D, from the original three dimensional case to a strongly decimated system with D=2.5, where only about $3\%$ of the Fourier modes interact. This is a unique methodology to probe the statistical properties of the turbulent energy cascade, without breaking any of the original symmetries of the equations. While the direct energy cascade persists, deviations from the Kolmogorov scaling are observed in the kinetic energy spectra. A model in terms of a correction with a linear dependency on the co-dimension of the fractal set, $E(k) \sim k^{-5/3 + 3-D}$, explains the results. At small scales, the intermittency of the vorticity field is observed to be quasi-singular as a function of the fractal mode reduction, leading to an almost Gaussian statistics already at $D \sim 2.98$. These effects must be connected to a genuine modification in the triad-to-triad nonlinear energy transfer mechanism.

physics.flu-dyn↗

arXiv2016

Preferential rotation of chiral dipoles in isotropic turbulence

Particles in the shape of chiral dipoles show a preferential rotation in three dimensional homogeneous isotropic turbulence. A chiral dipole consists of a rod with two helices of opposite handedness, one at each end. We can use 3d printing to fabricate these particles with length in the inertial range and track their rotations in a turbulent flow between oscillating grids. High aspect ratio chiral dipoles will align with the extensional eigenvectors of the strain rate tensor and the helical ends will respond to the strain field by spinning around its long axis. The mean of the measured spinning rate is non-zero and reflects the average stretching the particles experience. We use Stokesian dynamics simulations of chiral dipoles in pure strain flow to quantify the dependence of spinning on particle shape. Based on the known response to pure strain, we build a model that gives the spinning rate of small chiral dipoles using Lagrangian velocity gradients from high resolution direct numerical simulations. The statistics of chiral dipole spinning determined with this model show surprisingly good agreement with the measured spinning of much larger chiral dipoles in the experiments.

physics.flu-dyn↗

arXiv2015

Axisymmetric multiphase Lattice Boltzmann method for generic equations of state

We present an axisymmetric lattice Boltzmann model based on the Kupershtokh et al. multiphase model that is capable of solving liquid-gas density ratios up to $10^3$. Appropriate source terms are added to the lattice Boltzmann evolution equation to fully recover the axisymmetric multiphase conservation equations. We validate the model by showing that a stationary droplet obeys the Young-Laplace law, comparing the second oscillation mode of a droplet with respect to an analytical solution and showing correct mass conservation of a propagating density wave.

physics.comp-ph↗

arXiv2015

Asymmetric pedestrian dynamics on a staircase landing from continuous measurements

We investigate via extensive experimental data the dynamics of pedestrians walking in a corridor-shaped landing in a building at Eindhoven University of Technology. With year-long automatic measurements employing a Microsoft KinectTM 3D-range sensor and ad hoc tracking techniques, we acquired few hundreds of thousands pedestrian trajectories in real-life conditions. Here we discuss the asymmetric features of the dynamics in the two walking directions with respect to the flights of stairs (i.e. ascending or descending). We provide a detailed analysis of position and speed fields for the cases of pedestrians walking alone undisturbed and for couple of pedestrians in counter-flow. Then, we show average walking velocities exploring all the observed combinations in terms of numbers of pedestrians and walking directions.

physics.soc-ph↗

arXiv2015

On the Peterlin approximation for turbulent flows of polymer solutions

We study the impact of the Peterlin approximation on the statistics of the end-to-end separation of poly- mers in a turbulent flow. The FENE and FENE-P models are numerically integrated along a large number of Lagrangian trajectories resulting from a direct numerical simulation of three-dimensional homogeneous isotropic turbulence. Although the FENE-P model yields results in qualitative agreement with those of the FENE model, quantitative differences emerge. The steady-state probability of large extensions is overesti- mated by the FENE-P model. The alignment of polymers with the eigenvectors of the rate-of-strain tensor and with the direction of vorticity is weaker when the Peterlin approximation is used. At large Weissenberg numbers, both the correlation times of the extension and of the orientation of polymers are underestimated by the FENE-P model.

physics.flu-dyn↗

arXiv2015

Clustering of vertically constrained passive particles in homogeneous, isotropic turbulence

We analyze the dynamics of small particles vertically confined, by means of a linear restoring force, to move within a horizontal fluid slab in a three-dimensional (3D) homogeneous isotropic turbulent velocity field. The model that we introduce and study is possibly the simplest description for the dynamics of small aquatic organisms that, due to swimming, active regulation of their buoyancy, or any other mechanism, maintain themselves in a shallow horizontal layer below the free surface of oceans or lakes. By varying the strength of the restoring force, we are able to control the thickness of the fluid slab in which the particles can move. This allows us to analyze the statistical features of the system over a wide range of conditions going from a fully 3D incompressible flow (corresponding to the case of no confinement) to the extremely confined case corresponding to a two-dimensional slice. The background 3D turbulent velocity field is evolved by means of fully resolved direct numerical simulations. Whenever some level of vertical confinement is present, the particle trajectories deviate from that of fluid tracers and the particles experience an effectively compressible velocity field. Here, we have quantified the compressibility, the preferential concentration of the particles, and the correlation dimension by changing the strength of the restoring force. The main result is that there exists a particular value of the force constant, corresponding to a mean slab depth approximately equal to a few times the Kolmogorov length scale, that maximizes the clustering of the particles.

physics.flu-dyn↗

arXiv2015

Inertial particle acceleration in strained turbulence

The dynamics of inertial particles in turbulence is modelled and investigated by means of direct numerical simulation of an axisymmetrically expanding homogeneous turbulent strained flow. This flow can mimic the dynamics of particles close to stagnation points. The influence of mean straining flow is explored by varying the dimensionless strain rate parameter $Sk_0/ε_0$ from 0.2 to 20. We report results relative to the acceleration variances and probability density functions for both passive and inertial particles. A high mean strain is found to have a significant effect on the acceleration variance both directly, through an increase in wave number magnitude, and indirectly, through the coupling of the fluctuating velocity and the mean flow field. The influence of the strain on normalized particle acceleration pdfs is more subtle. For the case of passive particle we can approximate the acceleration variance with the aid of rapid distortion theory and obtain good agreement with simulation data. For the case of inertial particles we can write a formal expressions for the accelerations. The magnitude changes in the inertial particle acceleration variance and the effect on the probability density function are then discussed in a wider context for comparable flows, where the effects of the mean flow geometry and of the anisotropy at the small scales are present.

physics.flu-dyn↗

arXiv2015

Numerical simulations of aggregate breakup in bounded and unbounded turbulent flows

Breakup of small aggregates in fully developed turbulence is studied by means of direct numerical simulations in a series of typical bounded and unbounded flow configurations, such as a turbulent channel flow, a developing boundary layer and homogeneous isotropic turbulence. The simplest criterion for breakup is adopted, whereas aggregate breakup occurs when the local hydrodynamic stress $σ\sim \varepsilon^{1/2}$, with $\varepsilon$ being the energy dissipation at the position of the aggregate, overcomes a given threshold $σ_\mathrm{cr}$, which is characteristic for a given type of aggregates. Results show that the breakup rate decreases with increasing threshold. For small thresholds, it develops a universal scaling among the different flows. For high thresholds, the breakup rates show strong differences between the different flow configurations, highlighting the importance of non-universal mean-flow properties. To further assess the effects of flow inhomogeneity and turbulent fluctuations, theresults are compared with those obtained in a smooth stochastic flow. Furthermore, we discuss the limitations and applicability of a set of independent proxies.

physics.flu-dyn↗

arXiv2014

High statistics measurements of pedestrian dynamics

Understanding the complex behavior of pedestrians walking in crowds is a challenge for both science and technology. In particular, obtaining reliable models for crowd dynamics, capable of exhibiting qualitatively and quantitatively the observed emergent features of pedestrian flows, may have a remarkable impact for matters as security, comfort and structural serviceability. Aiming at a quantitative understanding of basic aspects of pedestrian dynamics, extensive and high-accuracy measurements of pedestrian trajectories have been performed. More than 100.000 real-life, time-resolved trajectories of people walking along a trafficked corridor in a building of the Eindhoven University of Technology, The Netherlands, have been recorded. A measurement strategy based on Microsoft Kinect\texttrademark has been used; the trajectories of pedestrians have been analyzed as ensemble data. The main result consists of a statistical descriptions of pedestrian characteristic kinematic quantities such as positions and fundamental diagrams, possibly conditioned to local crowding status (e.g., one or more pedestrian(s) walking, presence of co-flows and counter-flows).

physics.soc-ph↗

arXiv2014

Parameter Estimation of Social Forces in Crowd Dynamics Models via a Probabilistic Method

Focusing on a specific crowd dynamics situation, including real life experiments and measurements, our paper targets a twofold aim: (1) we present a Bayesian probabilistic method to estimate the value and the uncertainty (in the form of a probability density function) of parameters in crowd dynamic models from the experimental data; and (2) we introduce a fitness measure for the models to classify a couple of model structures (forces) according to their fitness to the experimental data, preparing the stage for a more general model-selection and validation strategy inspired by probabilistic data analysis. Finally, we review the essential aspects of our experimental setup and measurement technique.

physics.data-an↗

arXiv2014

A new assessment of the second order moment of Lagrangian velocity increments in turbulence

The behavior of the second-order Lagrangian structure functions on state-of-the-art numerical data both in two and three dimensions is studied. On the basis of a phenomenological connection between Eulerian space-fluctuations and the Lagrangian time-fluctuations, it is possible to rephrase the Kolmogorov $4/5$-law into a relation predicting the linear (in time) scaling for the second order Lagrangian structure function. When such a function is directly observed on current experimental or numerical data, it does not clearly display a scaling regime. A parameterization of the Lagrangian structure functions based on Batchelor model is introduced and tested on data for $3d$ turbulence, and for $2d$ turbulence in the inverse cascade regime. Such parameterization supports the idea, previously suggested, that both Eulerian and Lagrangian data are consistent with a linear scaling plus finite-Reynolds number effects affecting the small- and large-time scales. When large-time saturation effects are properly accounted for, compensated plots show a detectable plateau already at the available Reynolds number. Furthermore, this parameterization allows us to make quantitative predictions on the Reynolds number value for which Lagrangian structure functions are expected to display a scaling region. Finally, we show that this is also sufficient to predict the anomalous dependency of the normalized root mean squared acceleration as a function of the Reynolds number, without fitting parameters.

physics.flu-dyn↗

arXiv2013

Heat flux scaling in turbulent Rayleigh-Bénard convection with an imposed longitudinal wind

We present a numerical study of Rayleigh-Bénard convection disturbed by a longitudinal wind. Our results show that under the action of the wind, the vertical heat flux through the cell initially decreases, due to the mechanism of plumes-sweeping, and then increases again when turbulent forced convection dominates over the buoyancy. As a result, the Nusselt number is a non-monotonic function of the shear Reynolds number. We provide a simple model that captures with good accuracy all the dynamical regimes observed. We expect that our findings can lead the way to a more fundamental understanding of the of the complex interplay between mean-wind and plumes ejection in the Rayleigh-Bénard phenomenology.

physics.flu-dyn↗

arXiv2013

Towards a continuum model for particle-induced velocity fluctuations in suspension flow through a stenosed geometry

Non-particulate continuum descriptions allow for computationally efficient modeling of suspension flows at scales that are inaccessible to more detailed particulate approaches. It is well known that the presence of particles influences the effective viscosity of a suspension and that this effect has thus to be accounted for in macroscopic continuum models. The present paper aims at developing a non-particulate model that reproduces not only the rheology but also the cell-induced velocity fluctuations, responsible for enhanced diffusivity. The results are obtained from a coarse-grained blood model based on the lattice Boltzmann method. The benchmark system comprises a flow between two parallel plates with one of them featuring a smooth obstacle imitating a stenosis. Appropriate boundary conditions are developed for the particulate model to generate equilibrated cell configurations mimicking an infinite channel in front of the stenosis. The averaged flow field in the bulk of the channel can be described well by a non-particulate simulation with a matched viscosity. We show that our proposed phenomenological model is capable to reproduce many features of the velocity fluctuations.

cond-mat.soft↗