arXiv subjects

Fuxin Li

Publications and source records attributed to Fuxin Li.

At least 19 recordsLinked to original sources

arXiv2026

Grounding Vision and Language to 3D Masks for Long-Horizon Box Rearrangement

We study long-horizon planning in 3D environments from under-specified natural-language goals using only visual observations, focusing on multi-step 3D box rearrangement tasks. Existing approaches typically rely on symbolic planners with brittle relational grounding of states and goals, or on direct action-sequence generation from 2D vision-language models (VLMs). Both approaches struggle with reasoning over many objects, rich 3D geometry, and implicit semantic constraints. Recent advances in 3D VLMs demonstrate strong grounding of natural-language referents to 3D segmentation masks, suggesting the potential for more general planning capabilities. We extend existing 3D grounding models and propose Reactive Action Mask Planner (RAMP-3D), which formulates long-horizon planning as sequential reactive prediction of paired 3D masks: a "which-object" mask indicating what to pick and a "which-target-region" mask specifying where to place it. The resulting system processes RGB-D observations and natural-language task specifications to reactively generate multi-step pick-and-place actions for 3D box rearrangement. We conduct experiments across 11 task variants in warehouse-style environments with 1-30 boxes and diverse natural-language constraints. RAMP-3D achieves 79.5% success rate on long-horizon rearrangement tasks and significantly outperforms 2D VLM-based baselines, establishing mask-based reactive policies as a promising alternative to symbolic pipelines for long-horizon planning.

cs.AI↗

arXiv2025

LabOS: The AI-XR Co-Scientist That Sees and Works With Humans

Modern science advances fastest when thought meets action. LabOS represents the first AI co-scientist that unites computational reasoning with physical experimentation through multimodal perception, self-evolving agents, and Extended-Reality(XR)-enabled human-AI collaboration. By connecting multi-model AI agents, smart glasses, and robots, LabOS allows AI to see what scientists see, understand experimental context, and assist in real-time execution. Across applications -- from cancer immunotherapy target discovery to stem-cell engineering and material science -- LabOS shows that AI can move beyond computational design to participation, turning the laboratory into an intelligent, collaborative environment where human and machine discovery evolve together.

cs.AI↗

arXiv2024

Enhancing Diversity in Bayesian Deep Learning via Hyperspherical Energy Minimization of CKA

Particle-based Bayesian deep learning often requires a similarity metric to compare two networks. However, naive similarity metrics lack permutation invariance and are inappropriate for comparing networks. Centered Kernel Alignment (CKA) on feature kernels has been proposed to compare deep networks but has not been used as an optimization objective in Bayesian deep learning. In this paper, we explore the use of CKA in Bayesian deep learning to generate diverse ensembles and hypernetworks that output a network posterior. Noting that CKA projects kernels onto a unit hypersphere and that directly optimizing the CKA objective leads to diminishing gradients when two networks are very similar. We propose adopting the approach of hyperspherical energy (HE) on top of CKA kernels to address this drawback and improve training stability. Additionally, by leveraging CKA-based feature kernels, we derive feature repulsive terms applied to synthetically generated outlier examples. Experiments on both diverse ensembles and hypernetworks show that our approach significantly outperforms baselines in terms of uncertainty quantification in both synthetic and realistic outlier detection tasks.

cs.LG↗

arXiv2022

Space Time Recurrent Memory Network

Transformers have recently been popular for learning and inference in the spatial-temporal domain. However, their performance relies on storing and applying attention to the feature tensor of each frame in video. Hence, their space and time complexity increase linearly as the length of video grows, which could be very costly for long videos. We propose a novel visual memory network architecture for the learning and inference problem in the spatial-temporal domain. We maintain a fixed set of memory slots in our memory network and propose an algorithm based on Gumbel-Softmax to learn an adaptive strategy to update this memory. Finally, this architecture is benchmarked on the video object segmentation (VOS) and video prediction problems. We demonstrate that our memory architecture achieves state-of-the-art results, outperforming transformer-based methods on VOS and other recent methods on video prediction while maintaining constant memory capacity independent of the sequence length.

cs.CV↗

arXiv2021

Efficient Learning and Decoding of the Continuous-Time Hidden Markov Model for Disease Progression Modeling

The Continuous-Time Hidden Markov Model (CT-HMM) is an attractive approach to modeling disease progression due to its ability to describe noisy observations arriving irregularly in time. However, the lack of an efficient parameter learning algorithm for CT-HMM restricts its use to very small models or requires unrealistic constraints on the state transitions. In this paper, we present the first complete characterization of efficient EM-based learning methods for CT-HMM models, as well as the first solution to decoding the optimal state transition sequence and the corresponding state dwelling time. We show that EM-based learning consists of two challenges: the estimation of posterior state probabilities and the computation of end-state conditioned statistics. We solve the first challenge by reformulating the estimation problem as an equivalent discrete time-inhomogeneous hidden Markov model. The second challenge is addressed by adapting three distinct approaches from the continuous time Markov chain (CTMC) literature to the CT-HMM domain. Additionally, we further improve the efficiency of the most efficient method by a factor of the number of states. Then, for decoding, we incorporate a state-of-the-art method from the (CTMC) literature, and extend the end-state conditioned optimal state sequence decoding to the CT-HMM case with the computation of the expected state dwelling time. We demonstrate the use of CT-HMMs with more than 100 states to visualize and predict disease progression using a glaucoma dataset and an Alzheimer's disease dataset, and to decode and visualize the most probable state transition trajectory for individuals on the glaucoma dataset, which helps to identify progressing phenotypes in a comprehensive way. Finally, we apply the CT-HMM modeling and decoding strategy to investigate the progression of language acquisition and development.

cs.LG↗

arXiv2021

Unsupervised Few-Shot Action Recognition via Action-Appearance Aligned Meta-Adaptation

We present MetaUVFS as the first Unsupervised Meta-learning algorithm for Video Few-Shot action recognition. MetaUVFS leverages over 550K unlabeled videos to train a two-stream 2D and 3D CNN architecture via contrastive learning to capture the appearance-specific spatial and action-specific spatio-temporal video features respectively. MetaUVFS comprises a novel Action-Appearance Aligned Meta-adaptation (A3M) module that learns to focus on the action-oriented video features in relation to the appearance features via explicit few-shot episodic meta-learning over unsupervised hard-mined episodes. Our action-appearance alignment and explicit few-shot learner conditions the unsupervised training to mimic the downstream few-shot task, enabling MetaUVFS to significantly outperform all unsupervised methods on few-shot benchmarks. Moreover, unlike previous few-shot action recognition methods that are supervised, MetaUVFS needs neither base-class labels nor a supervised pretrained backbone. Thus, we need to train MetaUVFS just once to perform competitively or sometimes even outperform state-of-the-art supervised methods on popular HMDB51, UCF101, and Kinetics100 few-shot datasets.

cs.CV↗

arXiv2021

iGOS++: Integrated Gradient Optimized Saliency by Bilateral Perturbations

The black-box nature of the deep networks makes the explanation for "why" they make certain predictions extremely challenging. Saliency maps are one of the most widely-used local explanation tools to alleviate this problem. One of the primary approaches for generating saliency maps is by optimizing a mask over the input dimensions so that the output of the network is influenced the most by the masking. However, prior work only studies such influence by removing evidence from the input. In this paper, we present iGOS++, a framework to generate saliency maps that are optimized for altering the output of the black-box system by either removing or preserving only a small fraction of the input. Additionally, we propose to add a bilateral total variation term to the optimization that improves the continuity of the saliency map especially under high resolution and with thin object parts. The evaluation results from comparing iGOS++ against state-of-the-art saliency map methods show significant improvement in locating salient regions that are directly interpretable by humans. We utilized iGOS++ in the task of classifying COVID-19 cases from x-ray images and discovered that sometimes the CNN network is overfitted to the characters printed on the x-ray images when performing classification. Fixing this issue by data cleansing significantly improved the precision and recall of the classifier.

cs.CV↗

arXiv2021

Counterfactual State Explanations for Reinforcement Learning Agents via Generative Deep Learning

Counterfactual explanations, which deal with "why not?" scenarios, can provide insightful explanations to an AI agent's behavior. In this work, we focus on generating counterfactual explanations for deep reinforcement learning (RL) agents which operate in visual input environments like Atari. We introduce counterfactual state explanations, a novel example-based approach to counterfactual explanations based on generative deep learning. Specifically, a counterfactual state illustrates what minimal change is needed to an Atari game image such that the agent chooses a different action. We also evaluate the effectiveness of counterfactual states on human participants who are not machine learning experts. Our first user study investigates if humans can discern if the counterfactual state explanations are produced by the actual game or produced by a generative deep learning approach. Our second user study investigates if counterfactual state explanations can help non-expert participants identify a flawed agent; we compare against a baseline approach based on a nearest neighbor explanation which uses images from the actual game. Our results indicate that counterfactual state explanations have sufficient fidelity to the actual game images to enable non-experts to more effectively identify a flawed RL agent compared to the nearest neighbor baseline and to having no explanation at all.

cs.AI↗

arXiv2020

Embedding Deep Networks into Visual Explanations

In this paper, we propose a novel Explanation Neural Network (XNN) to explain the predictions made by a deep network. The XNN works by learning a nonlinear embedding of a high-dimensional activation vector of a deep network layer into a low-dimensional explanation space while retaining faithfulness i.e., the original deep learning predictions can be constructed from the few concepts extracted by our explanation network. We then visualize such concepts for human to learn about the high-level concepts that the deep network is using to make decisions. We propose an algorithm called Sparse Reconstruction Autoencoder (SRAE) for learning the embedding to the explanation space. SRAE aims to reconstruct part of the original feature space while retaining faithfulness. A pull-away term is applied to SRAE to make the bases of the explanation space more orthogonal to each other. A visualization system is then introduced for human understanding of the features in the explanation space. The proposed method is applied to explain CNN models in image classification tasks. We conducted a human study, which shows that the proposed approach outperforms single saliency map baselines, and improves human performance on a difficult classification tasks. Also, several novel metrics are introduced to evaluate the performance of explanations quantitatively without human involvement.

cs.CV↗

arXiv2019

Counterfactual States for Atari Agents via Generative Deep Learning

Although deep reinforcement learning agents have produced impressive results in many domains, their decision making is difficult to explain to humans. To address this problem, past work has mainly focused on explaining why an action was chosen in a given state. A different type of explanation that is useful is a counterfactual, which deals with "what if?" scenarios. In this work, we introduce the concept of a counterfactual state to help humans gain a better understanding of what would need to change (minimally) in an Atari game image for the agent to choose a different action. We introduce a novel method to create counterfactual states from a generative deep learning architecture. In addition, we evaluate the effectiveness of counterfactual states on human participants who are not machine learning experts. Our user study results suggest that our generated counterfactual states are useful in helping non-expert participants gain a better understanding of an agent's decision making process.

cs.LG↗

arXiv2019

The morphodynamics of 3D migrating cancer cells

Cell shape is an important biomarker that is directly linked to cell function. However, cell morphodynamics, namely the temporal fluctuation of cell shape is much less understood. We study the morphodynamics of MDA-MB-231 cells in type I collagen extracellular matrix (ECM). We find ECM mechanics, as tuned by collagen concentration, controls the morphodynamics but not the static cell morphology. We employ machine learning to classify cell shape into five different morphological phenotypes corresponding to different migration modes. As a result, cell morphodynamics is mapped into temporal evolution of morphological phenotypes. We systematically characterize the phenotype evolutions including occurrence probability, dwell time, transition flux, and 3D migrational characteristics. We find that manipulating Rho-signaling enhances the morphodynamics and phenotype transitions. Using a tumor organoid model, we show that the distinct invasion potentials of each phenotype modulate the phenotype homeostasis. Overall invasion of a tumor organoid is facilitated by individual cells searching for and committing to phenotypes of higher invasive potential. In conclusion, we show that 3D migrating cancer cells exhibit rich morphodynamics that is regulated by ECM mechanics, Rho-signaling, and is closely related with cell motility. Our results pave the way to the systematic characterization and functional understanding of cell morphodynamics as a new biomarker for normal and malignant cells.

q-bio.CB↗

arXiv2018

Interactive Naming for Explaining Deep Neural Networks: A Formative Study

We consider the problem of explaining the decisions of deep neural networks for image recognition in terms of human-recognizable visual concepts. In particular, given a test set of images, we aim to explain each classification in terms of a small number of image regions, or activation maps, which have been associated with semantic concepts by a human annotator. This allows for generating summary views of the typical reasons for classifications, which can help build trust in a classifier and/or identify example types for which the classifier may not be trusted. For this purpose, we developed a user interface for "interactive naming," which allows a human annotator to manually cluster significant activation maps in a test set into meaningful groups called "visual concepts". The main contribution of this paper is a systematic study of the visual concepts produced by five human annotators using the interactive naming interface. In particular, we consider the adequacy of the concepts for explaining the classification of test-set images, correspondence of the concepts to activations of individual neurons, and the inter-annotator agreement of visual concepts. We find that a large fraction of the activation maps have recognizable visual concepts, and that there is significant agreement between the different annotators about their denotations. Our work is an exploratory study of the interplay between machine learning and human recognition mediated by visualizations of the results of learning.

cs.LG↗

arXiv2018

Purely Geometric Scene Association and Retrieval - A Case for Macro Scale 3D Geometry

We address the problems of measuring geometric similarity between 3D scenes, represented through point clouds or range data frames, and associating them. Our approach leverages macro-scale 3D structural geometry - the relative configuration of arbitrary surfaces and relationships among structures that are potentially far apart. We express such discriminative information in a viewpoint-invariant feature space. These are subsequently encoded in a frame-level signature that can be utilized to measure geometric similarity. Such a characterization is robust to noise, incomplete and partially overlapping data besides viewpoint changes. We show how it can be employed to select a diverse set of data frames which have structurally similar content, and how to validate whether views with similar geometric content are from the same scene. The problem is formulated as one of general purpose retrieval from an unannotated, spatio-temporally unordered database. Empirical analysis indicates that the presented approach thoroughly outperforms baselines on depth / range data. Its depth-only performance is competitive with state-of-the-art approaches with RGB or RGB-D inputs, including ones based on deep learning. Experiments show retrieval performance to hold up well with much sparser databases, which is indicative of the approach's robustness. The approach generalized well - it did not require dataset specific training, and scaled up in our experiments. Finally, we also demonstrate how geometrically diverse selection of views can result in richer 3D reconstructions.

cs.CV↗

arXiv2018

Boundary Flow: A Siamese Network that Predicts Boundary Motion without Training on Motion

Using deep learning, this paper addresses the problem of joint object boundary detection and boundary motion estimation in videos, which we named boundary flow estimation. Boundary flow is an important mid-level visual cue as boundaries characterize objects spatial extents, and the flow indicates objects motions and interactions. Yet, most prior work on motion estimation has focused on dense object motion or feature points that may not necessarily reside on boundaries. For boundary flow estimation, we specify a new fully convolutional Siamese network (FCSN) that jointly estimates object-level boundaries in two consecutive frames. Boundary correspondences in the two frames are predicted by the same FCSN with a new, unconventional deconvolution approach. Finally, the boundary flow estimate is improved with an edgelet-based filtering. Evaluation is conducted on three tasks: boundary detection in videos, boundary flow estimation, and optical flow estimation. On boundary detection, we achieve the state-of-the-art performance on the benchmark VSB100 dataset. On boundary flow estimation, we present the first results on the Sintel training dataset. For optical flow estimation, we run the recent approach CPMFlow but on the augmented input with our boundary-flow matches, and achieve significant performance improvement on the Sintel benchmark.

cs.CV↗

arXiv2017

Adversarial Examples Detection in Deep Networks with Convolutional Filter Statistics

Deep learning has greatly improved visual recognition in recent years. However, recent research has shown that there exist many adversarial examples that can negatively impact the performance of such an architecture. This paper focuses on detecting those adversarial examples by analyzing whether they come from the same distribution as the normal examples. Instead of directly training a deep neural network to detect adversarials, a much simpler approach was proposed based on statistics on outputs from convolutional layers. A cascade classifier was designed to efficiently detect adversarials. Furthermore, trained from one particular adversarial generating mechanism, the resulting classifier can successfully detect adversarials from a completely different mechanism as well. The resulting classifier is non-subdifferentiable, hence creates a difficulty for adversaries to attack by using the gradient of the classifier. After detecting adversarial examples, we show that many of them can be recovered by simply performing a small average filter on the image. Those findings should lead to more insights about the classification mechanisms in deep convolutional neural networks.

cs.CV↗

arXiv2016

A Continuous Optimization Approach for Efficient and Accurate Scene Flow

We propose a continuous optimization method for solving dense 3D scene flow problems from stereo imagery. As in recent work, we represent the dynamic 3D scene as a collection of rigidly moving planar segments. The scene flow problem then becomes the joint estimation of pixel-to-segment assignment, 3D position, normal vector and rigid motion parameters for each segment, leading to a complex and expensive discrete-continuous optimization problem. In contrast, we propose a purely continuous formulation which can be solved more efficiently. Using a fine superpixel segmentation that is fixed a-priori, we propose a factor graph formulation that decomposes the problem into photometric, geometric, and smoothing constraints. We initialize the solution with a novel, high-quality initialization method, then independently refine the geometry and motion of the scene, and finally perform a global non-linear refinement using Levenberg-Marquardt. We evaluate our method in the challenging KITTI Scene Flow benchmark, ranking in third position, while being 3 to 30 times faster than the top competitors.

cs.CV↗

arXiv2014

GASP : Geometric Association with Surface Patches

A fundamental challenge to sensory processing tasks in perception and robotics is the problem of obtaining data associations across views. We present a robust solution for ascertaining potentially dense surface patch (superpixel) associations, requiring just range information. Our approach involves decomposition of a view into regularized surface patches. We represent them as sequences expressing geometry invariantly over their superpixel neighborhoods, as uniquely consistent partial orderings. We match these representations through an optimal sequence comparison metric based on the Damerau-Levenshtein distance - enabling robust association with quadratic complexity (in contrast to hitherto employed joint matching formulations which are NP-complete). The approach is able to perform under wide baselines, heavy rotations, partial overlaps, significant occlusions and sensor noise. The technique does not require any priors -- motion or otherwise, and does not make restrictive assumptions on scene structure and sensor movement. It does not require appearance -- is hence more widely applicable than appearance reliant methods, and invulnerable to related ambiguities such as textureless or aliased content. We present promising qualitative and quantitative results under diverse settings, along with comparatives with popular approaches based on range as well as RGB-D data.

cs.CV↗

arXiv2013

Beyond Sentiment: The Manifold of Human Emotions

Sentiment analysis predicts the presence of positive or negative emotions in a text document. In this paper we consider higher dimensional extensions of the sentiment concept, which represent a richer set of human emotions. Our approach goes beyond previous work in that our model contains a continuous manifold rather than a finite set of human emotions. We investigate the resulting model, compare it to psychological observations, and explore its predictive capabilities. Besides obtaining significant improvements over a baseline without manifold, we are also able to visualize different notions of positive sentiment in different domains.

cs.CL↗