arXiv subjects

Giancarlo Franzese

Publications and source records attributed to Giancarlo Franzese.

At least 55 records · Page 3Linked to original sources

arXiv2012

Nanoscale Dynamics of Phase Flipping in Water near its Hypothesized Liquid-Liquid Critical Point

Achieving a coherent understanding of the many thermodynamic and dynamic anomalies of water is among the most important unsolved puzzles in physics, chemistry, and biology. One hypothesized explanation imagines the existence of a line of first order phase transitions separating two liquid phases and terminating at a novel "liquid-liquid" critical point in a region of low temperature ($T \approx 250 \rm{K}$) and high pressure ($P \approx 200 \rm{MPa}$). Here we analyze a common model of water, the ST2 model, and find that the entire system flips between liquid states of high and low density. Further, we find that in the critical region crystallites melt on a time scale of nanoseconds. We perform a finite-size scaling analysis that accurately locates both the liquid-liquid coexistence line and its associated liquid-liquid critical point.

cond-mat.stat-mech↗

arXiv2012

Relations between the diffusion anomaly and cooperative rearranging regions in a hydrophobically nanoconfined water monolayer

We simulate liquid water between hydrophobic walls separated by 0.5 nm, to study how the diffusion constant D_\parallel parallel to the walls depends on the microscopic structure of water. At low temperature T, water diffusion can be associated with the number of defects in the hydrogen bonds network. However, the number of defects solely does not account for the peculiar diffusion of water, with maxima and minima along isotherms. Here, we calculate a relation that quantitatively reproduces the behavior of D_\parallel, focusing on the high-T regime. We clarify how the interplay between breaking of hydrogen bonds and cooperative rearranging regions of 1-nm size gives rise to the diffusion extrema, possibly relevant for both bulk and nanoconfined water.

cond-mat.soft↗

arXiv2011

Understanding diffusion and density anomaly in a coarse-grained model for water confined between hydrophobic walls

We study, by Monte Carlo simulations, a coarse-grained model of a water monolayer between hydrophobic walls at partial hydration, with a wall-to-wall distance of about 0.5 nm. We analyze how the diffusion constant parallel to the walls, $D_{\parallel}$, changes and correlates to the phase diagram of the system. We find a locus of $D_{\parallel}$ maxima and a locus of $D_{\parallel}$ minima along isotherms, with lines of constant $D_{\parallel}$ resembling the melting line of bulk water. The two loci of $D_{\parallel}$ extrema envelope the line of temperatures of density maxima at constant $P$. We show how these loci are related to the anomalous volume behavior due to the hydrogen bonds. At much lower $T$, confined water becomes subdiffusive, and we discuss how this behavior is a consequence of the increased correlations among water molecules when the hydrogen bond network develops. Within the subdiffusive region, although translations are largely hampered, we observe that the hydrogen bond network can equilibrate and its rearrangement is responsible for the appearance of density minima along isobars. We clarify that the minima are not necessarily related to the saturation of the hydrogen bond network.

cond-mat.soft↗

arXiv2011

More than one dynamic crossover in protein hydration water

Studies of liquid water in its supercooled region have led to many insights into the structure and behavior of water. While bulk water freezes at its homogeneous nucleation temperature of approximately 235 K, for protein hydration water, the binding of water molecules to the protein avoids crystallization. Here we study the dynamics of the hydrogen bond (HB) network of a percolating layer of water molecules, comparing measurements of a hydrated globular protein with the results of a coarse-grained model that has been shown to successfully reproduce the properties of hydration water. With dielectric spectroscopy we measure the temperature dependence of the relaxation time of protons charge fluctuations. These fluctuations are associated to the dynamics of the HB network of water molecules adsorbed on the protein surface. With Monte Carlo (MC) simulations and mean--field (MF) calculations we study the dynamics and thermodynamics of the model. In both experimental and model analyses we find two dynamic crossovers: (i) one at about 252 K, and (ii) one at about 181 K. The agreement of the experiments with the model allows us to relate the two crossovers to the presence of two specific heat maxima at ambient pressure. The first is due to fluctuations in the HB formation, and the second, at lower temperature, is due to the cooperative reordering of the HB network.

cond-mat.soft↗

arXiv2011

Structural and dynamical properties of nanoconfined supercooled water

Bulk water presents a large number of crystalline and amorphous ices. Hydrophobic nanoconfinement is known to affect the tendency of water to form ice and to reduce the melting temperature. However, a systematic study of the ice phases in nanoconfinement is hampered by the computational cost of simulations at very low temperatures. Here we develop a coarse-grained model for a water monolayer in hydrophobic nanoconfinement and study the formation of ice by Mote Carlo simulations. We find two ice phases: low-density-crystal ice at low pressure and high-density hexatic ice at high pressure, an intermediate phase between liquid and high-density-crystal ice.

cond-mat.soft↗

arXiv2011

Large decrease of fluctuations for supercooled water in hydrophobic nanoconfinement

We study by Monte Carlo simulations a coarse-grained model of a water layer confined in a fixed disordered matrix of hydrophobic nanoparticles at different particle concentrations c. For c=0 (bulk water) we find a first order liquid-liquid phase transition (LLPT). For c>0 our simulations are consistent with a LLPT line ending in two critical points at low and high pressure P. For c=25% we find a dramatic decrease of compressibility K_T, thermal expansion coefficient α_P, specific heat C_P at high P and low temperature T. Surprisingly, the effect is present also for c as low as 2.4%. We conclude that the higher the confinement, the lower the thermodynamic fluctuations and the more difficult it will be to detect the LLPT.

cond-mat.stat-mech↗

arXiv2010

Water at interface with proteins

Water is essential for the activity of proteins. However, the effect of the properties of water on the behavior of proteins is only partially understood. Recently, several experiments have investigated the relation between the dynamics of the hydration water and the dynamics of protein. These works have generated a large amount of data whose interpretation is debated. New experiments measure the dynamics of water at low temperature on the surface of proteins, finding a qualitative change (crossover) that might be related to the slowing down and stop of the protein's activity (protein glass transition), possibly relevant for the safe preservation of organic material at low temperature. To better understand the experimental data several scenarios have been discussed. Here, we review these experiments and discuss their interpretations in relation with the anomalous properties of water. We summarize the results for the thermodynamics and dynamics of supercooled water at an interface. We consider also the effect of water on protein stability, making a step in the direction of understanding, by means of Monte Carlo simulations and theoretical calculations, how the interplay of water cooperativity and hydrogen bonds interfacial strengthening affects the protein cold denaturation.

physics.bio-ph↗

arXiv2010

Effect of hydrogen bonds on protein stability

The mechanism of cold- and pressure-denaturation are matter of debate. Some models propose that when denaturation occurs more hydrogen bonds between the molecules of hydration water are formed. Other models identify the cause in the density fluctuations of surface water, or the destabilization of hydrophobic contacts because of the displacement of water molecules inside the protein, as proposed for high pressures. However, it is clear that water plays a fundamental role in the process. Here, we review some models that have been proposed to give insight into this problem. Next we describe a coarse-grained model of a water monolayer that successfully reproduces the complex thermodynamics of water and compares well with experiments on proteins at low hydration level. We introduce its extension for a homopolymer in contact with the water monolayer and study it by Monte Carlo simulations. Our goal is to perform a step in the direction of understanding how the interplay of cooperativity of water and interfacial hydrogen bonds affects the protein stability and the unfolding.

physics.bio-ph↗

arXiv2010

Isotropic soft-core potentials with two characteristic length scales and anomalous behaviour

Isotropic soft-core potentials with two characteristic length scales have been used since 40 years to describe systems with polymorphism. In the recent years intense research is showing that these potentials also display polyamorphism and several anomalies, including structural, diffusion and density anomaly. These anomalies occur in a hierarchy that resembles the anomalies of water. However, the absence of directional bonding in these isotropic potentials makes them different from water. Other systems, such as colloidal suspensions, protein solutions or liquid metals, can be well described by these family of potentials, opening the possibility of studying the mechanism generating the polyamorphism and anomalies in these complex liquids.

cond-mat.soft↗

arXiv2010

Softness dependence of the Anomalies for the Continuous Shouldered Well potential

By molecular dynamic simulations we study a system of particles interacting through a continuous isotropic pairwise core-softened potential consisting of a repulsive shoulder and an attractive well. The model displays a phase diagram with three fluid phases, a gas-liquid critical point, a liquid-liquid critical point, and anomalies in density, diffusion and structure. The hierarchy of the anomalies is the same as for water. We study the effect on the anomalies of varying the softness of the potential. We find that, making the soft-core steeper, the regions of density and diffusion anomalies contract in the T - ρ plane, while the region of structural anomaly is weakly affected. Therefore, a liquid can have anomalous structural behavior without density or diffusion anomalies. We show that, by considering as effective distances those corresponding to the maxima of the first two peaks of the radial distribution function g(r) in the high-density liquid, we can generalize to continuous two-scales potentials a criterion for the occurrence of the anomalies of density and diffusion, originally proposed for discontinuous potentials. We observe that the knowledge of the structural behavior within the first two coordination shells of the liquid is not enough to establish the occurrence of the anomalies. By introducing the density derivative of the the cumulative order integral of the excess entropy we show that the anomalous behavior is regulated by the structural order at distances as large as the fourth coordination shell. By comparing the results for different softness of the potential, we conclude that the disappearing of the density and diffusion anomalies for the steeper potentials is due to a more structured short-range order. All these results increase our understanding on how, knowing the interaction potential, we can evaluate the possible presence of anomalies for a liquid.

cond-mat.soft↗

arXiv2009

Effect of hydrogen bond cooperativity on the behavior of water

Four scenarios have been proposed for the low--temperature phase behavior of liquid water, each predicting different thermodynamics. The physical mechanism which leads to each is debated. Moreover, it is still unclear which of the scenarios best describes water, as there is no definitive experimental test. Here we address both open issues within the framework of a microscopic cell model by performing a study combining mean field calculations and Monte Carlo simulations. We show that a common physical mechanism underlies each of the four scenarios, and that two key physical quantities determine which of the four scenarios describes water: (i) the strength of the directional component of the hydrogen bond and (ii) the strength of the cooperative component of the hydrogen bond. The four scenarios may be mapped in the space of these two quantities. We argue that our conclusions are model-independent. Using estimates from experimental data for H bond properties the model predicts that the low-temperature phase diagram of water exhibits a liquid--liquid critical point at positive pressure.

cond-mat.soft↗

arXiv2009

Dynamically Slow Processes in Supercooled Water Confined Between Hydrophobic Plates

We study the dynamics of water confined between hydrophobic flat surfaces at low temperature. At different pressures, we observe different behaviors that we understand in terms of the hydrogen bonds dynamics. At high pressure, the formation of the open structure of the hydrogen bond network is inhibited and the surfaces can be rapidly dehydrated by decreasing the temperature. At lower pressure the rapid ordering of the hydrogen bonds generates heterogeneities that are responsible for strong non-exponential behavior of the correlation function, but with no strong increase of the correlation time. At very low pressures, the gradual formation of the hydrogen bond network is responsible for the large increase of the correlation time and, eventually, the dynamical arrest of the system and of the dehydration process.

cond-mat.soft↗

arXiv2009

Cluster Monte Carlo and numerical mean field analysis for the water liquid--liquid phase transition

By the Wolff's cluster Monte Carlo simulations and numerical minimization within a mean field approach, we study the low temperature phase diagram of water, adopting a cell model that reproduces the known properties of water in its fluid phases. Both methods allows us to study the water thermodynamic behavior at temperatures where other numerical approaches --both Monte Carlo and molecular dynamics-- are seriously hampered by the large increase of the correlation times. The cluster algorithm also allows us to emphasize that the liquid--liquid phase transition corresponds to the percolation transition of tetrahedrally ordered water molecules.

cond-mat.soft↗

arXiv2008

Pressure Effects in Supercooled Water: Comparison between a 2D Model of Water and Experiments for Surface Water on a Protein

Experiments in bulk water confirm the existence of two local arrangements of water molecules with different densities, but, because of inevitable freezing at low temperature $T$, can not ascertain whether the two arrangements separate in two phases. To avoid the freezing, new experiments measure the dynamics of water at low $T$ on the surface of proteins, finding a crossover from a non-Arrhenius regime at high $T$ to a regime that is approximately Arrhenius at low $T$. Motivated by these experiments, Kumar et al. [Phys. Rev. Lett. 100, 105701 (2008)] investigated, by Monte Carlo simulations and mean field calculations, the relation of the dynamic crossover with the coexistence of two liquid phases in a cell model for water and predict that: (i) the dynamic crossover is isochronic, i.e. the value of the crossover time $τ_{\rm L}$ is approximately independent of pressure $P$; (ii) the Arrhenius activation energy $E_{\rm A}(P)$ of the low-$T$ regime decreases upon increasing $P$; (iii) the temperature $T^*(P)$ at which $τ$ reaches a fixed macroscopic time $τ^*\geq τ_{\rm L}$ decreases upon increasing $P$; in particular, this is true also for the crossover temperature $T_{\rm L}(P)$ at which $τ=τ_{\rm L}$. Here, we compare these predictions with recent quasi elastic neutron scattering (QENS) experiments performed by X.-Q. Chu {\it et al.} on hydrated proteins at different values of $P$. We find that the experiments are consistent with these three predictions.

cond-mat.soft↗

arXiv2007

Water-like hierarchy of anomalies in a continuous spherical shouldered potential

We investigate by molecular dynamics simulations a continuous isotropic core-softened potential with attractive well in three dimensions, introduced by Franzese [cond-mat/0703681, to appear on Journal of Molecular Liquids], that displays liquid-liquid coexistence with a critical point and water-like density anomaly. Here we find diffusion and structural anomalies. These anomalies occur with the same hierarchy that characterizes water. Yet our analysis shows differences with respect to the water case. Therefore, many of the anomalous features of water could be present in isotropic systems with soft-core attractive potentials, such as colloids or liquid metals, consistent with recent experiments showing polyamorphism in metallic glasses.

cond-mat.stat-mech↗

arXiv2007

Predictions of Dynamic Behavior Under Pressure for Two Scenarios to Explain Water Anomalies

Using Monte Carlo simulations and mean field calculations for a cell model of water we find a dynamic crossover in the orientational correlation time $τ$ from non-Arrhenius behavior at high temperatures to Arrhenius behavior at low temperatures. This dynamic crossover is independent of whether water at very low temperature is charaterized by a ``liquid-liquid critical point'' or by the ``singularity free'' scenario. We relate $τ$ to fluctuations of hydrogen bond network and show that the crossover found for $τ$ for both scenarios is a consequence of the sharp change in the average number of hydrogen bonds at the temperature of the specific heat maximum. We find that the effect of pressure on the dynamics is strikingly different in the two scenarios, offering a means to distinguish between them.

cond-mat.soft↗

arXiv2007

Differences between discontinuous and continuous soft-core attractive potentials: the appearance of density anomaly

Soft-core attractive potentials can give rise to a phase diagram with three fluid phases at different densities (gas, low-density liquid and high-density liquid), separated by first order phase transition lines ending in critical points. Experiments show a phase diagram with these features for phosphorous and triphenyl-phosphite. Liquid-liquid phase transition could be relevant for water, silica, liquid metals, colloids and protein solutions, among others. Here we compare two potentials with short-range soft-core repulsion and narrow attraction. One of them is a squared potential that is known to have liquid-liquid phase transition, ending in a critical point, and no anomaly in density. The normal, monotonic, behavior of density for isobaric cooling is surprising if compared with molecular liquids, such as water, where a hypothetical critical point is proposed as rationale for the anomalous behavior of density. The second potential is a continuous version of the first. We show that the phase diagram associated to this new potential has, not only the liquid-liquid phase transition, but also the density anomaly. Our result, therefore, shows that the behavior in density is strongly dependent on the derivative of the potential.

cond-mat.stat-mech↗

arXiv2006

Understanding the Unusual Properties of Water

Water is commonly associated to the existence of life. However, there is no clear reason why water should be the only liquid in which life could form and survive. Since the seminal work of L. J. Henderson in 1913, scientists are trying to answer the question about the relation between the unusual properties of water and the existence of life. Here we follow the first steps along the challenging path to this answer, trying to understand (i) what is unusual about water; (ii) why water has anomalies; (iii) which are the full implications of these unusual properties; and (iv) if these anomalies are exclusive properties of water. By identifying some interesting clues, then by formulating a working hypothesis and, next, by testing it, we find the surprising results that some properties of water, such as the anomalous behavior of density, are very sensitive to small changes of the microscopic interactions, while others, such as the presence of more than one crystal or a possible phase transition between two liquids with different local structures, are predicted not only in water, but also in other liquids. Since the change of local liquid structure could be relevant in biological processes, the possibility of a wide class of liquids with this property could help in understanding if water is essential for life.

cond-mat.soft↗