arXiv subjects

Hoonkyung Lee

Publications and source records attributed to Hoonkyung Lee.

At least 19 recordsLinked to original sources

arXiv2026

QAssemble: A Pure Python Package for Quantum Many-Body Theory

QAssemble is a pure-Python package for the quantum many-body problem. It implements various functional approaches, such as tight-binding, Hartree-Fock, and GW approximations within a unified object-oriented architecture. Each physical concept--crystal structure, Hamiltonian, Green's function, self-energy, polarizability, screened Coulomb interaction--is represented as a distinct class. The modular design prioritizes code clarity and extensibility, leveraging NumPy, SciPy, and libdlr for numerical operations. Performance-critical kernels, including the polarizability bubble, Dyson equation inversion, and lattice Fourier transforms, are systematically vectorized and combined with the discrete Lehmann representation to achieve practical efficiency within a pure-Python environment. We validate QAssemble on the electronic structure of graphene with local and non-local interactions. Furthermore, benchmarks on a five-orbital extended Hund-Hubbard model demonstrate that this strategy delivers up to a 60x speedup over traditional loop-based Matsubara implementations. QAssemble supports both batch execution for production calculations and interactive workflows for method development.

cond-mat.str-el↗

arXiv2026

Topological Protection by Local Support Symmetry and Destructive Interference

Conventionally, symmetry-protected topological phases and band crossings are protected by global symmetries acting on the entire system. Here, we show that symmetries preserved only on a partial region of a system, termed local support symmetries, can protect topological features of the full system, even in the presence of symmetry-breaking couplings. We establish a unified framework by deriving explicit conditions for such protection in both insulating and metallic phases and show that destructive interference of Bloch wave functions plays a key role. Using representative tight-binding models, we demonstrate band crossings and topological bands protected by local support crystalline and time-reversal symmetries, and further present a realistic material realization in a fluorinated biphenylene network, where a band crossing is protected by a local support C$_2$ symmetry.

cond-mat.str-el↗

arXiv2025

CrSe_2 and CrTe_2 Monolayers as Efficient Air Pollutants Nanosensors

Nanosensors are critical in environmental monitoring, industrial safety, and public health by detecting specific hazardous gases like CO, NO, SO_2, and CH_4 at trace levels. This study uses density functional theory (DFT) calculations to examine the gas-sensing capabilities of chromium diselenide (CrSe_2) and chromium ditelluride (CrTe_2) monolayers through their structural and electronic responses to gas adsorption. Adsorption energy analysis shows that Te vacancy-induced CrTe_2 (VTe-CrTe_2) exhibits the strongest binding with energies of -1.52, -1.79, and -1.61 eV for CO, NO, and SO_2, respectively. Similarly, CrSe_2 has its values of -1.13, -1.17, -0.90, and -1.12 eV for CO, NO, SO_2, and CH_2, respectively, indicating suitability for reversible sensing. This study also investigates how substitutional doping of Ge, Sb, and Sn influences the sensing mechanism of CrSe_2 and CrTe_2 monolayers. Density of states (DOS) analysis highlights notable electronic changes around the Fermi level, especially in VTe-CrTe_2 and Sb/Sn-doped CrTe_2, confirming their enhanced sensing abilities. Charge density difference analysis shows significant charge redistribution, with CrTe_2 experiencing stronger charge transfer effects than CrSe_2. Variations in electrostatic potential and work function further demonstrate the higher sensitivity of CrTe_2, particularly in its defective and doped forms, confirming its status as a superior material for gas sensing applications.

cond-mat.mtrl-sci↗

arXiv2025

Mechanical Force-Driven Charge Redistribution for Hydrogen Release at Ambient Conditions in Transition Metal-Intercalated Bilayer Graphene

Transition-metal (TM) atom-functionalized nanomaterials are promising candidates for hydrogen storage due to their ability to adsorb multiple hydrogen molecules through Kubas interactions. However, achieving efficient hydrogen desorption at ambient conditions remains a critical challenge for practical use. Here, we present a novel approach to modulate the desorption temperature of hydrogen in TM-intercalated bilayer graphene (BLG) using external mechanical forces. By employing first-principles density functional theory (DFT) and thermodynamic occupancy probability calculations, we demonstrate that adjusting the interlayer distance allows for precise control over the interaction energy of H2, thereby facilitating its desorption at ambient conditions. Complete hydrogen desorption occurs when the interlayer distance is reduced below 4.7 Å, 5.3 Å, and 5.1 Å for Sc-, Ti-, and V-intercalated BLG, respectively. Our findings suggest that external mechanical forces can effectively bring hydrogen occupancy to zero by minimizing charge transfer from the TM d-orbitals to H2 antibonding orbitals. Notably, while the total charge transferred from the TM atoms remains nearly constant at varying interlayer distances, its redistribution between the graphene layers and H2 fine-tunes the interaction strength. This approach can be extended to large interlayer distances, as supported by recent experiments on graphene oxide membranes [ACS Nano 12, 9309 (2018)]. Furthermore, recent experimental advances in noble gas and alkali metal intercalation in BLG highlight the potential of this approach to overcome the long-standing challenge of high desorption temperatures in TM-functionalized layered nanomaterials.

cond-mat.mtrl-sci↗

arXiv2025

Bi2Te3-Sb2Te3-Bi2Te3 Lateral Heterostructures Grown by Molecular Beam Epitaxy

Lateral in-plane heterostructures enable precise control of electronic properties and quantum effects in 2D materials. However, their periodic synthesis is challenging because it requires precise control to maintain sharp, coherent interfaces and compatible growth conditions across different domains. Herein, we report the successful heteroepitaxial growth of Bi2Te3-Sb2Te3-Bi2Te3 and periodic lateral heterostructures on hexagonal boron nitride (hBN) through in-situ multiple growth steps at different stages using a molecular beam epitaxy (MBE) system. These trilateral heterostructures are fabricated by growing triangular or hexagonal Bi2Te3 islands at the very beginning, with typical sizes of several hundred nanometers, on the single-crystalline hBN, followed by the lateral growth of Sb2Te3 to form bilateral heterostructures, and finally growing Bi2Te3 on the side facets of the bilateral heterostructures. The electron microscopy results confirm the core area as Bi2Te3, the intermediate layer as Sb2Te3, and the outermost region as Bi2Te3. The resulting heterostructures are approximately 4-8 nm thick and several hundred nanometers in lateral dimensions. These heterostructures are found to grow epitaxially on hBN (< +-4 deg misalignment), and the individual layers are strongly epitaxially aligned with each other. The in-plane heterojunctions are analyzed using the aberration-corrected (Cs-corrected) high-angle annular dark-field scanning transmission electron microscopy technique. We have explored and established the plasmonic properties of these fabricated Bi2Te3-Sb2Te3-Bi2Te3 lateral heterostructures. In addition, the electronic states and the topological properties of the few quintuple layers (QLs) (2- to 4-QLs) Bi2Te3-Sb2Te3 lateral periodic heterostructures are investigated by first-principles calculations.

cond-mat.mtrl-sci↗

arXiv2024

ComDMFT v.2.0: Fully Self-Consistent ab initio GW+EDMFT for the Electronic Structure of Correlated Quantum Materials

ComDMFT is a parallel computational package designed to study the electronic structure of correlated quantum materials from first principles. Our approach is based on the combination of first-principles methods and dynamical mean field theories. In version 2.0, we implemented fully-diagrammatic GW+EDMFT from first-principles. In this approach, correlated electrons are treated within full GW+EDMFT and the rest are treated within full-GW, seamlessly. This implementation enables the electronic structure calculation of quantum materials with weak, intermediate, and strong electron correlation without prior knowledge of the degree of electron correlation.

cond-mat.str-el↗

arXiv2024

Negative Photo Conductivity Triggered with Visible Light in Wide Bandgap Oxide-Based Optoelectronic Crossbar Memristive Array for Photograph Sensing and Neuromorphic Computing Applications

Photoresponsivity studies of wide-bandgap oxide-based devices have emerged as a vibrant and popular research area. Researchers have explored various material systems in their quest to develop devices capable of responding to illumination. In this study, we engineered a mature wide bandgap oxide-based bilayer heterostructure synaptic memristor to emulate the human brain for applications in neuromorphic computing and photograph sensing. The device exhibits advanced electric and electro-photonic synaptic functions, such as long-term potentiation (LTP), long-term depression (LTD), and paired pulse facilitation (PPF), by applying successive electric and photonic pulses. Moreover, the device exhibits exceptional electrical SET and photonic RESET endurance, maintaining its stability for a minimum of 1200 cycles without any degradation. Density functional theory calculations of the band structures provide insights into the conduction mechanism of the device. Based on this memristor array, we developed an autoencoder and convolutional neural network for noise reduction and image recognition tasks, which achieves a peak signal-to-noise ratio of 562 and high accuracy of 84.23%, while consuming lower energy by four orders of magnitude compared with the Tesla P40 GPU. This groundbreaking research not only opens doors for the integration of our device into image processing but also represents a significant advancement in the realm of in-memory computing and photograph sensing features in a single cell.

physics.app-ph↗

arXiv2024

Theoretical investigation of the vertical dielectric screening dependence on defects for few-layered van der Waals materials

First-principle calculations were employed to analyze the effects induced by vacancies of molybdenum (Mo) and sulfur (S) on the dielectric properties of few-layered MoS2. We explored the combined effects of vacancies and dipole interactions on the dielectric properties of few-layered MoS2. In the presence of dielectric screening, we investigated uniformly distributed Mo and S vacancies, and then considered the case of concentrated vacancies. Our results show that the dielectric screening remarkably depends on the distribution of vacancies owing to the polarization induced by the vacancies and on the interlayer distances. This conclusion was validated for a wide range of wide-gap semiconductors with different positions and distributions of vacancies, providing an effective and reliable method for calculating and predicting electrostatic screening of dimensionally reduced materials. We further provided a method for engineering the dielectric constant by changing the interlayer distance, tuning the number of vacancies and the distribution of vacancies in few-layered van der Waals materials for their application in nanodevices and supercapacitors.

cond-mat.mtrl-sci↗

arXiv2024

Engineering two-dimensional nodal semimetals in functionalized biphenylene by fluorine adatoms

We propose a new band engineering scheme on the biphenylene network, a newly synthesized carbon allotrope. First, we investigate the mechanism for the appearance of type II Dirac fermion in a pristine biphenylene network. We show that the essential ingredients are mirror symmetries and the stabilization of the compact localized eigenstates via destructive interference. While the former is used for the band-crossing point along high symmetry lines, the latter makes the obtained Dirac dispersion highly inclined. Then, we demonstrate that many other different kinds of Dirac fermions, such as type-I Dirac, gapped type-II Dirac, and nodal line semimetals, can be developed by fluorinating the biphenylene network periodically in various ways. In this program, the key role of the fluorine atoms is manipulating the condition of the destructive interference and mirror symmetries.

cond-mat.str-el↗

arXiv2021

Unidirectional Alignment of AgCN Microwires on Distorted Transition Metal Dichalcogenide Crystals

Van der Waals epitaxy on the surface of two-dimensional (2D) layered crystals has gained significant research interest for the assembly of well-ordered nanostructures and fabrication of vertical heterostructures based on 2D crystals. Although van der Waals epitaxial assembly on the hexagonal phase of transition metal dichalcogenides (TMDCs) has been relatively well characterized, a comparable study on the distorted octahedral phase (1T' or Td) of TMDCs is largely lacking. Here we investigate the assembly behavior of one-dimensional (1D) AgCN microwires on various distorted TMDC crystals, namely 1T'-MoTe2, Td-WTe2, and 1T'-ReS2. The unidirectional alignment of AgCN chains is observed on these crystals, reflecting the symmetry of underlying distorted TMDCs. Polarized Raman spectroscopy and transmission electron microscopy directly confirm that AgCN chains display the remarkable alignment behavior along the distorted chain directions of underlying TMDCs. The observed unidirectional assembly behavior can be attributed to the favorable adsorption configurations of 1D chains along the substrate distortion, which is supported by our theoretical calculations and observation of similar assembly behavior from different cyanide chains. The aligned AgCN microwires can be harnessed as facile markers to identify polymorphs and crystal orientations of TMDCs.

cond-mat.mtrl-sci↗

arXiv2017

The Nature of Interlayer Binding and Stacking of $sp$-$sp^{2}$ Hybridized Carbon Layers: A Quantum Monte Carlo Study

$α$-graphyne is a two-dimensional sheet of $sp$-$sp^2$ hybridized carbon atoms in a honeycomb lattice. While the geometrical structure is similar to that of graphene, the hybridized triple bonds give rise to electronic structure that is different from that of graphene. Similar to graphene, $α$-graphyne can be stacked in bilayers with two stable configurations, but the different stackings have very different electronic structures: one is predicted to have gapless parabolic bands and the other a tunable band gap which is attractive for applications. In order to realize applications, it is crucial to understand which stacking is more stable. This is difficult to model, as the stability is a result of weak interlayer van der Waals interactions which are not well captured by density functional theory (DFT). We have used quantum Monte Carlo simulations that accurately include van der Waals interactions to calculate the interlayer binding energy of bilayer graphyne and to determine its most stable stacking mode. Our results show that interlayer bindings of $sp$- and $sp^{2}$-bonded carbon networks are significantly underestimated in a Kohn-Sham DFT approach, even with an exchange-correlation potential corrected to include, in some approximation, van der Waals interactions. Finally, our quantum Monte Carlo calculations reveal that the interlayer binding energy difference between the two stacking modes is only 0.9(4) meV/atom. From this we conclude that the two stable stacking modes of bilayer $α$-graphyne are almost degenerate with each other, and both will occur with about the same probability at room temperature unless there is a synthesis path that prefers one stacking over the other.

cond-mat.mtrl-sci↗

arXiv2016

High-throughput screening of metal-porphyrin-like graphenes for selective capture of carbon dioxide

Nano-materials, such as metal-organic frameworks, have been considered to capture CO$_2$. However, their application has been limited largely because they exhibit poor selectivity for flue gases and low capture capacity under low pressures. We perform a high-throughput screening for selective CO$_2$ capture from flue gases by using first principles thermodynamics. We find that elements with empty d orbitals selectively attract CO$_2$ from gaseous mixtures under low CO$_2$ pressures at 300 K and release it at ~450 K. CO$_2$ binding to elements involves hybridization of the metal d orbitals with the CO$_2$ $π$ orbitals and CO$_2$-transition metal complexes were observed in experiments. This result allows us to perform high-throughput screening to discover novel promising CO$_2$ capture materials with empty d orbitals and predict their capture performance under various conditions. Moreover, these findings provide physical insights into selective CO$_2$ capture and open a new path to explore CO$_2$ capture materials.

cond-mat.mtrl-sci↗

arXiv2016

Steric effects of CO2 binding to transition metal-benzene complexes: a first-principles study

Using density functional theory (DFT) calculations, we investigated the adsorption of CO2 molecules on 3d transition metal (TM)-benzene complexes. Our calculations show that the maximum number of CO2 molecules adsorbable on Sc or Ti atoms is three, but the 18-electron rule predicts it should be four. The 18-electron rule is generally successful in predicting the maximum H2 adsorption number for TM atoms including Sc or Ti atoms. We found that the 18-electron rule fails to correctly predict CO2 binding on Sc- or Ti-benzene complexes because CO2 binding, in contrast to H2 binding, requires additional consideration for steric hindrance due to the large bond length of CO2. We calculated the occupation function for CO2 using the Tolman cone angle, which shows that three CO2 molecules fully occupy the available space around Sc- and Ti-benzene complexes. This estimation is the same maximum CO2 adsorption number predicted by DFT calculations. Therefore, we propose that the occupation function for CO2 using the Tolman cone angle is an efficient model for evaluating steric hindrance of CO2 adsorption on a surface.

physics.chem-ph↗

arXiv2015

Interlayer correlation between two $^4$He monolayers adsorbed on both sides of $α$-graphyne

Path-integral Monte Carlo calculations have been performed to study the $^4$He adsorption on both sides of a single $α$-graphyne sheet. For investigation of the interlayer correlation between the upper and the lower monolayer of $^4$He adatoms, the $^4$He-substrate interaction is described by the sum of the $^4$He-C interatomic pair potentials, for which we use both Lennard-Jones and Yukawa-6 anisotropic potentials. When the lower $^4$He layer is a C$_{4/3}$ commensurate solid, the upper-layer $^4$He atoms are found to form a Kagomé lattice structure at a Mott insulating density of 0.0706 Å$^{-2}$, and a commensurate solid at an areal density of 0.0941 Å$^{-2}$ for both substrate potentials. The correlation between upper- and lower-layer pseudospins, which were introduced in Ref. [1] for two degenerate configurations of three $^4$He atoms in a hexagonal cell, depends on the substrate potential used; With the substrate potential based on the anisotropic Yukawa-6 pair potentials, the Ising pseudo-spins of both $^4$He layers are found to be anti-parallel to each other while the parallel and anti-parallel pseudo-spin alignments between the two $^4$He layers are nearly degenerate with the Lennard-Jones potentials. This is attributed to the difference in the interlayer distance, which is $\sim 4$ Å~ with the Yukawa-6 substrate potential but as large as $\sim 4.8$ Å~with the Lennard-Jones potential. [1] Y. Kwon, H. Shin, and H. Lee, Phys. Rev. B 88, 201403(R) (2013)

cond-mat.mtrl-sci↗

arXiv2014

Commensurate-incommensurate solid transition in the $^4$He monolayer on $γ$-graphyne

Path-integral Monte Carlo calculations have been performed to study the $^4$He adsorption on $γ$-graphyne, a planar network of benzene rings connected by acetylene bonds. Assuming the $^4$He-substrate interaction described by a pairwise sum of empirical $^4$He-carbon interatomic potentials, we find that unlike $α$-graphyne, a single sheet of $γ$-graphyne is not permeable to $^4$He atoms in spite of its large surface area. One-dimensional density distributions computed as a function of the distance from the graphyne surface reveal a layer-by-layer growth of $^4$He atoms. A partially-filled $^4$He monolayer is found to exhibit different commensurate solid structures depending on the helium coverage; it shows a C$_{2/3}$ commensurate structure at an areal density of 0.0491Å$^{-2}$, a C$_{3/3}$ structure at 0.0736Å$^{-2}$, and a C$_{4/3}$ structure at 0.0982Å$^{-2}$. While the promotion to the second layer starts beyond the C$_{4/3}$ helium coverage, the first $^4$He layer is found to form an incommensurate triangular solid when compressed with the development of the second layer.

cond-mat.mtrl-sci↗

arXiv2014

Density-Functional Theory and Tight-Binding Studies of the Geometry of Hydrogen Adsorbed on Graphynes

Using density-functional theory and a tight-binding approach we investigate the physical origin of distinct favourable geometries of adsorbed hydrogen atoms in various graphyne structures, and the relation with electronic properties. In particular, H atoms are adsorbed in-plane for $α$-graphyne, and they assume an oblique configuration in all other graphynes, including 6,6,12-graphyne. The origin of different configurations is identified by means of a simple tight-binding model and it is controlled by the tuning of the hopping between sp$^2$-bonded C atoms and sp-bonded C atoms hybridized with the H atoms. We discuss in details how the geometry change of the attached H atom tunes the electronic properties like energy gap.

cond-mat.mtrl-sci↗

arXiv2014

Semiclassical approximation solved by Monte Carlo as an efficient impurity solver for dynamical mean field theory and its cluster extensions

We propose that a combination of the semiclassical approximation with Monte Carlo simulations can be an efficient and reliable impurity solver for dynamical mean field theory equations and their cluster extensions with large cluster sizes. In order to show the reliability of the method, we consider two test cases: (i) the single-band Hubbard model within the dynamical cluster approximation with 4- and 8-site clusters and (ii) the anisotropic two-orbital Hubbard model with orbitals of different band width within the single-site dynamical mean field theory. We compare our results with those obtained from solving the dynamical mean field equations with continuous time and determinant quantum Monte Carlo. In both test cases we observe reasonable values of the metal-insulator critical interaction strength $U_c/t$ and, while some details of the spectral functions cannot be captured by the semiclassical approximation due to the freezing of dynamical fluctuations, the main features are reproduced by the approach.

cond-mat.str-el↗

arXiv2014

Cohesion Energetics of Carbon Allotropes : Quantum Monte Carlo Study

We have performed quantum Monte Carlo calculations to study the cohesion energetics of carbon allotropes, including $sp^3$-bonded diamond, $sp^2$-bonded graphene, $sp$-$sp^2$ hybridized graphynes, and $sp$-bonded carbyne. The computed cohesive energies of diamond and graphene are found to be in excellent agreement with the corresponding values determined experimentally for diamond and graphite, respectively, when the zero-point energies, along with the interlayer binding in the case of graphite, are included. We have also found that the cohesive energy of graphyne decreases systematically as the ratio of $sp$-bonded carbon atoms increases. The cohesive energy of $γ$-graphyne, the most energetically-stable graphyne, turns out to be 6.766(6) eV/atom, which is smaller than that of graphene by 0.698(12) eV/atom. Experimental difficulty in synthesizing graphynes could be explained by their significantly smaller cohesive energies. Finally we conclude that the cohesive energy of a newly-proposed graphyne can be accurately estimated with the carbon-carbon bond energies determined from the cohesive energies of graphene and three different graphynes considered here.

cond-mat.mtrl-sci↗