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Ihsan Ullah

Publications and source records attributed to Ihsan Ullah.

At least 19 recordsLinked to original sources

Point Tracking in Surgery--The 2025 Surgical Tattoos in Infrared Challenge (STIRC2025)

Point tracking in surgery is crucial to enable applications in downstream tasks such as segmentation, 3D reconstruction, virtual tissue landmarking, autonomous probe-based scanning, and subtask autonomy. This paper introduces the 2025 iteration of a point tracking challenge to address this, wherein participants submit their algorithms for quantification. Their algorithms are evaluated using a dataset named surgical tattoos in infrared (STIR), with the challenge named the STIR Challenge 2025 (STIRC2025). The STIR Challenge 2025 comprises two quantitative components: accuracy and efficiency. The accuracy component tests the accuracy of algorithms on in vivo and ex vivo sequences. The efficiency component tests algorithm inference latency. The challenge was conducted as a part of MICCAI EndoVis 2025, and seven teams participated in this challenge. In this paper we summarize the challenge results and participant methods. The challenge dataset is available at: https://zenodo.org/records/20191078, and the code for baseline models and metrics calculation is available here: https://github.com/athaddius/STIRMetrics

cs.CV

A Stochastic--Geometric Theory of Scaling Laws in Grokking

Delayed generalization (\ie~grokking) refers to the phenomenon in which a neural network fits its training data early in training but only begins to generalize after a prolonged delay, often through an abrupt transition. Despite extensive empirical study, its underlying mechanism remains poorly understood. In this work, we first theoretically characterize a shell--core topological configuration of the reachable solution space induced by Adam's optimization dynamics with weight-shrinkage regularization, supported by empirical evidence. This optimization-induced topological configuration gives rise to grokking. In model's parameter space, random initialization solutions concentrate on a thin outer spherical shell, enclosing another spherical shell of memorization solutions, which in turn contains a core corresponding to the generalization solutions. Leveraging stopping-time theory, we then analyze the geometry of this topological configuration and the solution transition time at which optimization trajectories escape the memorization manifold and first reach the boundary of the generalization manifold. Our theoretical analysis derives grokking scaling laws for the learning rate, batch size, and $\ell_2$ regularization coefficient, which are further validated through experiments and shown to recover results from prior literature.

stat.ML

Croissant Tasks: A Metadata Format for Reproducible Machine Learning Evaluations

Reproducibility is fundamental to the scientific method, yet remains a critical challenge in machine learning. Contributing factors include underspecified execution details and brittle software environments. Human-centric remedies, such as checklists and manual verification, help but require intensive effort and fail to scale. To address this, we introduce Croissant Tasks: a declarative, machine-actionable metadata format that abstracts low-level implementation details into high-level specifications. This format enables conceptual reproducibility: verifying claims via independent, agent-generated implementations rather than brittle source code replication. We contribute: (1) the Croissant Tasks specification, formally decoupling task problem from solution; (2) an automated LLM pipeline that retrofits existing benchmarks into this format; and (3) empirical validation showing autonomous agents can ingest these specifications to generate functional, accurate reproduction pipelines from scratch. We envision this format as a new foundation for automated and conceptual reproducibility in machine learning.

cs.AI

SSTL: Self-Sensing Tendon Loop for Hysteresis Modeling and Compensation in Tendon-Sheath Mechanisms

Flexible endoscopic robots enable minimally invasive access through natural orifices, but their control accuracy is limited by configuration-dependent hysteresis in the tendon-sheath mechanisms (TSMs). Tendon-sheath friction and tendon elasticity induce a systematic discrepancy between the proximal actuation input and distal output, and this discrepancy varies with the insertion tube configuration. To address this challenge, this paper proposes the Self-Sensing Tendon Loop (SSTL), a double-pass tendon loop routed through the insertion tube and wrapped around a distal pulley, and returned to the proximal end. The loop structure allows both the input and output tensions of the SSTL to be measured proximally, thereby providing an input-output tension profile without requiring distal force or fiber-optic sensors. Because the SSTL shares the same routing path as the actuation TSM, the two TSMs exhibit strongly correlated hysteresis behaviors. From the SSTL tension profile, a learning-based mapping estimates the configuration-dependent hysteresis parameters of the actuation TSM, which are then used by a feedforward controller to compensate for actuation hysteresis. We validate the proposed method by tracking actuation tendon tension under three different insertion tube configurations. Across sinusoidal and random trajectories, the proposed method reduces average RMSE by 88.1% compared with the uncompensated baseline, achieving 97.8% of the performance of direct identification, which requires direct measurement of the input and output tension profile of the actuation TSM.

cs.RO

FAIR Universe Weak Lensing ML Uncertainty Challenge: Handling Uncertainties and Distribution Shifts for Precision Cosmology

Weak gravitational lensing, the correlated distortion of background galaxy shapes by foreground structures, is a powerful probe of the matter distribution in our universe and allows accurate constraints on the cosmological model. In recent years, high-order statistics and machine learning (ML) techniques have been applied to weak lensing data to extract the nonlinear information beyond traditional two-point analysis. However, these methods typically rely on cosmological simulations, which poses several challenges: simulations are computationally expensive, limiting most realistic setups to a low training data regime; inaccurate modeling of systematics in the simulations create distribution shifts that can bias cosmological parameter constraints; and varying simulation setups across studies make method comparison difficult. To address these difficulties, we present the first weak lensing benchmark dataset with several realistic systematics and launch the FAIR Universe Weak Lensing Machine Learning Uncertainty Challenge. The challenge focuses on measuring the fundamental properties of the universe from weak lensing data with limited training set and potential distribution shifts, while providing a standardized benchmark for rigorous comparison across methods. Organized in two phases, the challenge will bring together the physics and ML communities to advance the methodologies for handling systematic uncertainties, data efficiency, and distribution shifts in weak lensing analysis with ML, ultimately facilitating the deployment of ML approaches into upcoming weak lensing survey analysis.

astro-ph.CO

MarUco: A Markerless 6D Pose Estimation Framework for Closed-Loop Control of Surgical Continuum Manipulators

Flexible endoscopic continuum manipulators offer high dexterity and access to complex anatomy, but nonlinear hysteresis limits feedforward control accuracy. Closed-loop control can compensate for these errors but requires accurate six-degree-of-freedom (6D) end-effector pose feedback. We present MarUco, a markerless 6D pose estimation framework for closed-loop control using only stereo vision during operation. A photorealistic pseudo-rigid-body simulation pipeline generates large-scale annotated training data without manual labeling. A multifeature fusion network integrates masks, keypoints, heatmaps, and bounding boxes from both stereo views to estimate an initial pose, followed by a learned single-pass render-and-compare module that refines the pose without iterative optimization. Kinematics-free hand-eye calibration estimates camera-to-robot-base extrinsics, and self-supervised adaptation uses unlabeled real stereo pairs to mitigate sim-to-real pose error. Across 1,000 real samples, MarUco achieves translation and rotation errors of 0.78 $\pm$ 0.50 mm and 3.07 $\pm$ 1.25{\deg}, respectively, with a total processing time of 52.4 ms per stereo pair. In closed-loop experiments over eight reference paths, MarUco achieves a mean terminal translation error of 1.8 mm, an 88% reduction relative to uncompensated open-loop control. To the best of our knowledge, this is the first markerless position-based visual servoing framework for continuum manipulators.

cs.RO

Stylized Meta-Album: Group-bias injection with style transfer to study robustness against distribution shifts

We introduce Stylized Meta-Album (SMA), a new image classification meta-dataset comprising 24 datasets (12 content datasets, and 12 stylized datasets), designed to advance studies on out-of-distribution (OOD) generalization and related topics. Created using style transfer techniques from 12 subject classification datasets, SMA provides a diverse and extensive set of 4800 groups, combining various subjects (objects, plants, animals, human actions, textures) with multiple styles. SMA enables flexible control over groups and classes, allowing us to configure datasets to reflect diverse benchmark scenarios. While ideally, data collection would capture extensive group diversity, practical constraints often make this infeasible. SMA addresses this by enabling large and configurable group structures through flexible control over styles, subject classes, and domains-allowing datasets to reflect a wide range of real-world benchmark scenarios. This design not only expands group and class diversity, but also opens new methodological directions for evaluating model performance across diverse group and domain configurations-including scenarios with many minority groups, varying group imbalance, and complex domain shifts-and for studying fairness, robustness, and adaptation under a broader range of realistic conditions. To demonstrate SMA's effectiveness, we implemented two benchmarks: (1) a novel OOD generalization and group fairness benchmark leveraging SMA's domain, class, and group diversity to evaluate existing benchmarks. Our findings reveal that while simple balancing and algorithms utilizing group information remain competitive as claimed in previous benchmarks, increasing group diversity significantly impacts fairness, altering the superiority and relative rankings of algorithms. We also propose to use \textit{Top-M worst group accuracy} as a new hyperparameter tuning metric, demonstrating broader fairness during optimization and delivering better final worst-group accuracy for larger group diversity. (2) An unsupervised domain adaptation (UDA) benchmark utilizing SMA's group diversity to evaluate UDA algorithms across more scenarios, offering a more comprehensive benchmark with lower error bars (reduced by 73\% and 28\% in closed-set setting and UniDA setting, respectively) compared to existing efforts. These use cases highlight SMA's potential to significantly impact the outcomes of conventional benchmarks.

cs.CV

3D CT-Based Coronary Calcium Assessment: A Feature-Driven Machine Learning Framework

Coronary artery calcium (CAC) scoring plays a crucial role in the early detection and risk stratification of coronary artery disease (CAD). In this study, we focus on non-contrast coronary computed tomography angiography (CCTA) scans, which are commonly used for early calcification detection in clinical settings. To address the challenge of limited annotated data, we propose a radiomics-based pipeline that leverages pseudo-labeling to generate training labels, thereby eliminating the need for expert-defined segmentations. Additionally, we explore the use of pretrained foundation models, specifically CT-FM and RadImageNet, to extract image features, which are then used with traditional classifiers. We compare the performance of these deep learning features with that of radiomics features. Evaluation is conducted on a clinical CCTA dataset comprising 182 patients, where individuals are classified into two groups: zero versus non-zero calcium scores. We further investigate the impact of training on non-contrast datasets versus combined contrast and non-contrast datasets, with testing performed only on non contrast scans. Results show that radiomics-based models significantly outperform CNN-derived embeddings from foundation models (achieving 84% accuracy and p<0.05), despite the unavailability of expert annotations.

cs.CV

Fair Universe Higgs Uncertainty Challenge

This competition in high-energy physics (HEP) and machine learning was the first to strongly emphasise uncertainties in $(H \rightarrow \tau^+ \tau^-)$ cross-section measurement. Participants were tasked with developing advanced analysis techniques capable of dealing with uncertainties in the input training data and providing credible confidence intervals. The accuracy of these intervals was evaluated using pseudo-experiments to assess correct coverage. The dataset is now published in Zenodo, and the winning submissions are fully documented.

hep-ph

Bridging LLMs and Symbolic Reasoning in Educational QA Systems: Insights from the XAI Challenge at IJCNN 2025

The growing integration of Artificial Intelligence (AI) into education has intensified the need for transparency and interpretability. While hackathons have long served as agile environments for rapid AI prototyping, few have directly addressed eXplainable AI (XAI) in real-world educational contexts. This paper presents a comprehensive analysis of the XAI Challenge 2025, a hackathon-style competition jointly organized by Ho Chi Minh City University of Technology (HCMUT) and the International Workshop on Trustworthiness and Reliability in Neurosymbolic AI (TRNS-AI), held as part of the International Joint Conference on Neural Networks (IJCNN 2025). The challenge tasked participants with building Question-Answering (QA) systems capable of answering student queries about university policies while generating clear, logic-based natural language explanations. To promote transparency and trustworthiness, solutions were required to use lightweight Large Language Models (LLMs) or hybrid LLM-symbolic systems. A high-quality dataset was provided, constructed via logic-based templates with Z3 validation and refined through expert student review to ensure alignment with real-world academic scenarios. We describe the challenge's motivation, structure, dataset construction, and evaluation protocol. Situating the competition within the broader evolution of AI hackathons, we argue that it represents a novel effort to bridge LLMs and symbolic reasoning in service of explainability. Our findings offer actionable insights for future XAI-centered educational systems and competitive research initiatives.

cs.CL

3DPyranet Features Fusion for Spatio-temporal Feature Learning

Convolutional neural network (CNN) slides a kernel over the whole image to produce an output map. This kernel scheme reduces the number of parameters with respect to a fully connected neural network (NN). While CNN has proven to be an effective model in recognition of handwritten characters and traffic signal sign boards, etc. recently, its deep variants have proven to be effective in similar as well as more challenging applications like object, scene and action recognition. Deep CNN add more layers and kernels to the classical CNN, increasing the number of parameters, and partly reducing the main advantage of CNN which is less parameters. In this paper, a 3D pyramidal neural network called 3DPyraNet and a discriminative approach for spatio-temporal feature learning based on it, called 3DPyraNet-F, are proposed. 3DPyraNet introduces a new weighting scheme which learns features from both spatial and temporal dimensions analyzing multiple adjacent frames and keeping a biological plausible structure. It keeps the spatial topology of the input image and presents fewer parameters and lower computational and memory costs compared to both fully connected NNs and recent deep CNNs. 3DPyraNet-F extract the features maps of the highest layer of the learned network, fuse them in a single vector, and provide it as input in such a way to a linear-SVM classifier that enhances the recognition of human actions and dynamic scenes from the videos. Encouraging results are reported with 3DPyraNet in real-world environments, especially in the presence of camera induced motion. Further, 3DPyraNet-F clearly outperforms the state-of-the-art on three benchmark datasets and shows comparable result for the fourth.

cs.CV

Point Tracking in Surgery--The 2024 Surgical Tattoos in Infrared (STIR) Challenge

Understanding tissue motion in surgery is crucial to enable applications in downstream tasks such as segmentation, 3D reconstruction, virtual tissue landmarking, autonomous probe-based scanning, and subtask autonomy. Labeled data are essential to enabling algorithms in these downstream tasks since they allow us to quantify and train algorithms. This paper introduces a point tracking challenge to address this, wherein participants can submit their algorithms for quantification. The submitted algorithms are evaluated using a dataset named surgical tattoos in infrared (STIR), with the challenge aptly named the STIR Challenge 2024. The STIR Challenge 2024 comprises two quantitative components: accuracy and efficiency. The accuracy component tests the accuracy of algorithms on in vivo and ex vivo sequences. The efficiency component tests the latency of algorithm inference. The challenge was conducted as a part of MICCAI EndoVis 2024. In this challenge, we had 8 total teams, with 4 teams submitting before and 4 submitting after challenge day. This paper details the STIR Challenge 2024, which serves to move the field towards more accurate and efficient algorithms for spatial understanding in surgery. In this paper we summarize the design, submissions, and results from the challenge. The challenge dataset is available here: https://zenodo.org/records/14803158 , and the code for baseline models and metric calculation is available here: https://github.com/athaddius/STIRMetrics

cs.CV

Video-DPRP: A Differentially Private Approach for Visual Privacy-Preserving Video Human Activity Recognition

Considerable effort has been made in privacy-preserving video human activity recognition (HAR). Two primary approaches to ensure privacy preservation in Video HAR are differential privacy (DP) and visual privacy. Techniques enforcing DP during training provide strong theoretical privacy guarantees but offer limited capabilities for visual privacy assessment. Conversely methods, such as low-resolution transformations, data obfuscation and adversarial networks, emphasize visual privacy but lack clear theoretical privacy assurances. In this work, we focus on two main objectives: (1) leveraging DP properties to develop a model-free approach for visual privacy in videos and (2) evaluating our proposed technique using both differential privacy and visual privacy assessments on HAR tasks. To achieve goal (1), we introduce Video-DPRP: a Video-sample-wise Differentially Private Random Projection framework for privacy-preserved video reconstruction for HAR. By using random projections, noise matrices and right singular vectors derived from the singular value decomposition of videos, Video-DPRP reconstructs DP videos using privacy parameters ($\epsilon,\delta$) while enabling visual privacy assessment. For goal (2), using UCF101 and HMDB51 datasets, we compare Video-DPRP's performance on activity recognition with traditional DP methods, and state-of-the-art (SOTA) visual privacy-preserving techniques. Additionally, we assess its effectiveness in preserving privacy-related attributes such as facial features, gender, and skin color, using the PA-HMDB and VISPR datasets. Video-DPRP combines privacy-preservation from both a DP and visual privacy perspective unlike SOTA methods that typically address only one of these aspects.

cs.CV

Usefulness of LLMs as an Author Checklist Assistant for Scientific Papers: NeurIPS'24 Experiment

Large language models (LLMs) represent a promising, but controversial, tool in aiding scientific peer review. This study evaluates the usefulness of LLMs in a conference setting as a tool for vetting paper submissions against submission standards. We conduct an experiment at the 2024 Neural Information Processing Systems (NeurIPS) conference, where 234 papers were voluntarily submitted to an "LLM-based Checklist Assistant." This assistant validates whether papers adhere to the author checklist used by NeurIPS, which includes questions to ensure compliance with research and manuscript preparation standards. Evaluation of the assistant by NeurIPS paper authors suggests that the LLM-based assistant was generally helpful in verifying checklist completion. In post-usage surveys, over 70% of authors found the assistant useful, and 70% indicate that they would revise their papers or checklist responses based on its feedback. While causal attribution to the assistant is not definitive, qualitative evidence suggests that the LLM contributed to improving some submissions. Survey responses and analysis of re-submissions indicate that authors made substantive revisions to their submissions in response to specific feedback from the LLM. The experiment also highlights common issues with LLMs: inaccuracy (20/52) and excessive strictness (14/52) were the most frequent issues flagged by authors. We also conduct experiments to understand potential gaming of the system, which reveal that the assistant could be manipulated to enhance scores through fabricated justifications, highlighting potential vulnerabilities of automated review tools.

cs.CL

FAIR Universe HiggsML Uncertainty Dataset and Competition

The FAIR Universe HiggsML Uncertainty Challenge focused on measuring the physical properties of elementary particles with imperfect simulators. Participants were required to compute and report confidence intervals for a parameter of interest regarding the Higgs boson while accounting for various systematic (epistemic) uncertainties. The dataset is a tabular dataset of 28 features and 280 million instances. Each instance represents a simulated proton-proton collision as observed at CERN's Large Hadron Collider in Geneva, Switzerland. The features of these simulations were chosen to capture key characteristics of different types of particles. These include primary attributes, such as the energy and three-dimensional momentum of the particles, as well as derived attributes, which are calculated from the primary ones using domain-specific knowledge. Additionally, a label feature designates each instance's type of proton-proton collision, distinguishing the Higgs boson events of interest from three background sources. As outlined in this paper, the permanent release of the dataset allows long-term benchmarking of new techniques. The leading submissions, including Contrastive Normalising Flows and Density Ratios estimation through classification, are described. Our challenge has brought together the physics and machine learning communities to advance our understanding and methodologies in handling systematic uncertainties within AI techniques.

hep-ph

SegSTRONG-C: Segmenting Surgical Tools Robustly On Non-adversarial Generated Corruptions -- An EndoVis'24 Challenge

Surgical data science has seen rapid advancement with the excellent performance of end-to-end deep neural networks (DNNs). Despite their successes, DNNs have been proven susceptible to minor "corruptions," introducing a major concern for the translation of cutting-edge technology, especially in high-stakes scenarios. We introduce the SegSTRONG-C challenge dedicated to better understanding model deterioration under unforeseen but plausible non-adversarial "corruption" and the capabilities of contemporary methods that seek to improve it. Built on a dataset generated through counterfactual robotic replay, SegSTRONG-C provides paired clean and "corrupted" samples, enabling reproducible evaluation of model robustness. Participants are challenged to train tool segmentation algorithms on "uncorrupted" data and evaluate them on "corrupted" test domains for the binary robot tool segmentation task. Through comprehensive baseline experiments and participating submissions from widespread community engagement, SegSTRONG-C reveals key themes for model failure and identifies promising directions for improving robustness. The performance of challenge winners, achieving an average 0.9394 DSC and 0.9301 NSD across the unreleased test sets with "corruption" types: bleeding, smoke, and low brightness. This highlights how prior knowledge, customized training strategies, and architectural choice can be leveraged to improve robustness. In conclusion, the SegSTRONG-C challenge has identified practical approaches for enhancing model robustness. However, most approaches rely on conventional techniques that have known limitations. Looking ahead, we advocate for expanding intellectual diversity and creativity in non-adversarial robustness beyond data augmentation, calling for new paradigms that enhance universal robustness to unforeseen "corruptions" to facilitate richer applications in surgical data science.

cs.CV

RelevAI-Reviewer: A Benchmark on AI Reviewers for Survey Paper Relevance

Recent advancements in Artificial Intelligence (AI), particularly the widespread adoption of Large Language Models (LLMs), have significantly enhanced text analysis capabilities. This technological evolution offers considerable promise for automating the review of scientific papers, a task traditionally managed through peer review by fellow researchers. Despite its critical role in maintaining research quality, the conventional peer-review process is often slow and subject to biases, potentially impeding the swift propagation of scientific knowledge. In this paper, we propose RelevAI-Reviewer, an automatic system that conceptualizes the task of survey paper review as a classification problem, aimed at assessing the relevance of a paper in relation to a specified prompt, analogous to a "call for papers". To address this, we introduce a novel dataset comprised of 25,164 instances. Each instance contains one prompt and four candidate papers, each varying in relevance to the prompt. The objective is to develop a machine learning (ML) model capable of determining the relevance of each paper and identifying the most pertinent one. We explore various baseline approaches, including traditional ML classifiers like Support Vector Machine (SVM) and advanced language models such as BERT. Preliminary findings indicate that the BERT-based end-to-end classifier surpasses other conventional ML methods in performance. We present this problem as a public challenge to foster engagement and interest in this area of research.

cs.CL

Depth Estimation using Weighted-loss and Transfer Learning

Depth estimation from 2D images is a common computer vision task that has applications in many fields including autonomous vehicles, scene understanding and robotics. The accuracy of a supervised depth estimation method mainly relies on the chosen loss function, the model architecture, quality of data and performance metrics. In this study, we propose a simplified and adaptable approach to improve depth estimation accuracy using transfer learning and an optimized loss function. The optimized loss function is a combination of weighted losses to which enhance robustness and generalization: Mean Absolute Error (MAE), Edge Loss and Structural Similarity Index (SSIM). We use a grid search and a random search method to find optimized weights for the losses, which leads to an improved model. We explore multiple encoder-decoder-based models including DenseNet121, DenseNet169, DenseNet201, and EfficientNet for the supervised depth estimation model on NYU Depth Dataset v2. We observe that the EfficientNet model, pre-trained on ImageNet for classification when used as an encoder, with a simple upsampling decoder, gives the best results in terms of RSME, REL and log10: 0.386, 0.113 and 0.049, respectively. We also perform a qualitative analysis which illustrates that our model produces depth maps that closely resemble ground truth, even in cases where the ground truth is flawed. The results indicate significant improvements in accuracy and robustness, with EfficientNet being the most successful architecture.

cs.CV