arXiv subjects

Imran Razzak

Publications and source records attributed to Imran Razzak.

At least 91 records · Page 5Linked to original sources

arXiv2025

A Machine Learning Approach to Predict Biological Age and its Longitudinal Drivers

Predicting an individual's aging trajectory is a central challenge in preventative medicine and bioinformatics. While machine learning models can predict chronological age from biomarkers, they often fail to capture the dynamic, longitudinal nature of the aging process. In this work, we developed and validated a machine learning pipeline to predict age using a longitudinal cohort with data from two distinct time periods (2019-2020 and 2021-2022). We demonstrate that a model using only static, cross-sectional biomarkers has limited predictive power when generalizing to future time points. However, by engineering novel features that explicitly capture the rate of change (slope) of key biomarkers over time, we significantly improved model performance. Our final LightGBM model, trained on the initial wave of data, successfully predicted age in the subsequent wave with high accuracy ($R^2 = 0.515$ for males, $R^2 = 0.498$ for females), significantly outperforming both traditional linear models and other tree-based ensembles. SHAP analysis of our successful model revealed that the engineered slope features were among the most important predictors, highlighting that an individual's health trajectory, not just their static health snapshot, is a key determinant of biological age. Our framework paves the way for clinical tools that dynamically track patient health trajectories, enabling early intervention and personalized prevention strategies for age-related diseases.

cs.LG↗

arXiv2025

How Effectively Can Large Language Models Connect SNP Variants and ECG Phenotypes for Cardiovascular Risk Prediction?

Cardiovascular disease (CVD) prediction remains a tremendous challenge due to its multifactorial etiology and global burden of morbidity and mortality. Despite the growing availability of genomic and electrophysiological data, extracting biologically meaningful insights from such high-dimensional, noisy, and sparsely annotated datasets remains a non-trivial task. Recently, LLMs has been applied effectively to predict structural variations in biological sequences. In this work, we explore the potential of fine-tuned LLMs to predict cardiac diseases and SNPs potentially leading to CVD risk using genetic markers derived from high-throughput genomic profiling. We investigate the effect of genetic patterns associated with cardiac conditions and evaluate how LLMs can learn latent biological relationships from structured and semi-structured genomic data obtained by mapping genetic aspects that are inherited from the family tree. By framing the problem as a Chain of Thought (CoT) reasoning task, the models are prompted to generate disease labels and articulate informed clinical deductions across diverse patient profiles and phenotypes. The findings highlight the promise of LLMs in contributing to early detection, risk assessment, and ultimately, the advancement of personalized medicine in cardiac care.

cs.LG↗

arXiv2025

MESAHA-Net: Multi-Encoders based Self-Adaptive Hard Attention Network with Maximum Intensity Projections for Lung Nodule Segmentation in CT Scan

Accurate lung nodule segmentation is crucial for early-stage lung cancer diagnosis, as it can substantially enhance patient survival rates. Computed tomography (CT) images are widely employed for early diagnosis in lung nodule analysis. However, the heterogeneity of lung nodules, size diversity, and the complexity of the surrounding environment pose challenges for developing robust nodule segmentation methods. In this study, we propose an efficient end-to-end framework, the multi-encoder-based self-adaptive hard attention network (MESAHA-Net), for precise lung nodule segmentation in CT scans. MESAHA-Net comprises three encoding paths, an attention block, and a decoder block, facilitating the integration of three types of inputs: CT slice patches, forward and backward maximum intensity projection (MIP) images, and region of interest (ROI) masks encompassing the nodule. By employing a novel adaptive hard attention mechanism, MESAHA-Net iteratively performs slice-by-slice 2D segmentation of lung nodules, focusing on the nodule region in each slice to generate 3D volumetric segmentation of lung nodules. The proposed framework has been comprehensively evaluated on the LIDC-IDRI dataset, the largest publicly available dataset for lung nodule segmentation. The results demonstrate that our approach is highly robust for various lung nodule types, outperforming previous state-of-the-art techniques in terms of segmentation accuracy and computational complexity, rendering it suitable for real-time clinical implementation.

eess.IV↗

arXiv2025

scAGC: Learning Adaptive Cell Graphs with Contrastive Guidance for Single-Cell Clustering

Accurate cell type annotation is a crucial step in analyzing single-cell RNA sequencing (scRNA-seq) data, which provides valuable insights into cellular heterogeneity. However, due to the high dimensionality and prevalence of zero elements in scRNA-seq data, traditional clustering methods face significant statistical and computational challenges. While some advanced methods use graph neural networks to model cell-cell relationships, they often depend on static graph structures that are sensitive to noise and fail to capture the long-tailed distribution inherent in single-cell populations.To address these limitations, we propose scAGC, a single-cell clustering method that learns adaptive cell graphs with contrastive guidance. Our approach optimizes feature representations and cell graphs simultaneously in an end-to-end manner. Specifically, we introduce a topology-adaptive graph autoencoder that leverages a differentiable Gumbel-Softmax sampling strategy to dynamically refine the graph structure during training. This adaptive mechanism mitigates the problem of a long-tailed degree distribution by promoting a more balanced neighborhood structure. To model the discrete, over-dispersed, and zero-inflated nature of scRNA-seq data, we integrate a Zero-Inflated Negative Binomial (ZINB) loss for robust feature reconstruction. Furthermore, a contrastive learning objective is incorporated to regularize the graph learning process and prevent abrupt changes in the graph topology, ensuring stability and enhancing convergence. Comprehensive experiments on 9 real scRNA-seq datasets demonstrate that scAGC consistently outperforms other state-of-the-art methods, yielding the best NMI and ARI scores on 9 and 7 datasets, respectively.Our code is available at Anonymous Github.

cs.LG↗

arXiv2025

Retinal Lipidomics Associations as Candidate Biomarkers for Cardiovascular Health

Retinal microvascular imaging is increasingly recognised as a non invasive method for evaluating systemic vascular and metabolic health. However, the association between lipidomics and retinal vasculature remains inadequate. This study investigates the relationships between serum lipid subclasses, free fatty acids (FA), diacylglycerols (DAG), triacylglycerols (TAG), and cholesteryl esters (CE), and retinal microvascular characteristics in a large population-based cohort. Using Spearman correlation analysis, we examined the interconnection between lipid subclasses and ten retinal microvascular traits, applying the Benjamini-Hochberg false discovery rate (BH-FDR) to adjust for statistical significance. Results indicated that FA were linked to retinal vessel twistiness, while CE correlated with the average widths of arteries and veins. Conversely, DAG and TAG showed negative correlations with the width and complexity of arterioles and venules. These findings suggest that retinal vascular architecture reflects distinct circulating lipid profiles, supporting its role as a non-invasive marker of systemic metabolic health. This study is the first to integrate deep learning (DL)derived retinal traits with lipidomic subclasses in a healthy cohort, thereby providing insights into microvascular structural changes independent of disease status or treatment effects.

cs.CV↗

arXiv2025

The Emergence of Deep Reinforcement Learning for Path Planning

The increasing demand for autonomous systems in complex and dynamic environments has driven significant research into intelligent path planning methodologies. For decades, graph-based search algorithms, linear programming techniques, and evolutionary computation methods have served as foundational approaches in this domain. Recently, deep reinforcement learning (DRL) has emerged as a powerful method for enabling autonomous agents to learn optimal navigation strategies through interaction with their environments. This survey provides a comprehensive overview of traditional approaches as well as the recent advancements in DRL applied to path planning tasks, focusing on autonomous vehicles, drones, and robotic platforms. Key algorithms across both conventional and learning-based paradigms are categorized, with their innovations and practical implementations highlighted. This is followed by a thorough discussion of their respective strengths and limitations in terms of computational efficiency, scalability, adaptability, and robustness. The survey concludes by identifying key open challenges and outlining promising avenues for future research. Special attention is given to hybrid approaches that integrate DRL with classical planning techniques to leverage the benefits of both learning-based adaptability and deterministic reliability, offering promising directions for robust and resilient autonomous navigation.

cs.RO↗

arXiv2025

Integrated Oculomics and Lipidomics Reveal Microvascular Metabolic Signatures Associated with Cardiovascular Health in a Healthy Cohort

Cardiovascular disease (CVD) remains the leading global cause of mortality, yet current risk stratification methods often fail to detect early, subclinical changes. Previous studies have generally not integrated retinal microvasculature characteristics with comprehensive serum lipidomic profiles as potential indicators of CVD risk. In this study, an innovative imaging omics framework was introduced, combining retinal microvascular traits derived through deep learning based image processing with serum lipidomic data to highlight asymptomatic biomarkers of cardiovascular risk beyond the conventional lipid panel. This represents the first large scale, covariate adjusted and stratified correlation analysis conducted in a healthy population, which is essential for identifying early indicators of disease. Retinal phenotypes were quantified using automated image analysis tools, while serum lipid profiling was performed by Ultra High Performance Liquid Chromatography Electrospray ionization High resolution mass spectrometry (UHPLC ESI HRMS). Strong, age- and sex-independent correlations were established, particularly between average artery width, vessel density, and lipid subclasses such as triacylglycerols (TAGs), diacylglycerols (DAGs), and ceramides (Cers). These associations suggest a converging mechanism of microvascular remodeling under metabolic stress. By linking detailed vascular structural phenotypes to specific lipid species, this study fills a critical gap in the understanding of early CVD pathogenesis. This integration not only offers a novel perspective on microvascular metabolic associations but also presents a significant opportunity for the identification of robust, non-invasive biomarkers. Ultimately, these findings may support improved early detection, targeted prevention, and personalized approaches in cardiovascular healthcare.

cs.CV↗

arXiv2025

SVLA: A Unified Speech-Vision-Language Assistant with Multimodal Reasoning and Speech Generation

Large vision and language models show strong performance in tasks like image captioning, visual question answering, and retrieval. However, challenges remain in integrating speech, text, and vision into a unified model, especially for spoken tasks. Speech generation methods vary (some produce speech directly), others through text (but their impact on quality is unclear). Evaluation often relies on automatic speech recognition, which may introduce bias. We propose SVLA, a unified speech vision language model based on a transformer architecture that handles multimodal inputs and outputs. We train it on 38.2 million speech text image examples, including 64.1 hours of synthetic speech. We also introduce Speech VQA Accuracy, a new metric for evaluating spoken responses. SVLA improves multimodal understanding and generation by better combining speech, vision, and language.

cs.MM↗

arXiv2025

Robust Multimodal Learning for Ophthalmic Disease Grading via Disentangled Representation

This paper discusses how ophthalmologists often rely on multimodal data to improve diagnostic accuracy. However, complete multimodal data is rare in real-world applications due to a lack of medical equipment and concerns about data privacy. Traditional deep learning methods typically address these issues by learning representations in latent space. However, the paper highlights two key limitations of these approaches: (i) Task-irrelevant redundant information (e.g., numerous slices) in complex modalities leads to significant redundancy in latent space representations. (ii) Overlapping multimodal representations make it difficult to extract unique features for each modality. To overcome these challenges, the authors propose the Essence-Point and Disentangle Representation Learning (EDRL) strategy, which integrates a self-distillation mechanism into an end-to-end framework to enhance feature selection and disentanglement for more robust multimodal learning. Specifically, the Essence-Point Representation Learning module selects discriminative features that improve disease grading performance. The Disentangled Representation Learning module separates multimodal data into modality-common and modality-unique representations, reducing feature entanglement and enhancing both robustness and interpretability in ophthalmic disease diagnosis. Experiments on multimodal ophthalmology datasets show that the proposed EDRL strategy significantly outperforms current state-of-the-art methods.

cs.CV↗

arXiv2025

Dual-Stage Value-Guided Inference with Margin-Based Reward Adjustment for Fast and Faithful VLM Captioning

Despite significant advances in inference-time search for vision-language models (VLMs), existing approaches remain both computationally expensive and prone to unpenalized, low-confidence generations which often lead to persistent hallucinations. We introduce \textbf{Value-guided Inference with Margin-based Reward (ViMaR)}, a two-stage inference framework that improves both efficiency and output fidelity by combining a temporal-difference value model with a margin-aware reward adjustment. In the first stage, we perform a single pass to identify the highest-value caption among diverse candidates. In the second stage, we selectively refine only those segments that were overlooked or exhibit weak visual grounding, thereby eliminating frequently rewarded evaluations. A calibrated margin-based penalty discourages low-confidence continuations while preserving descriptive richness. Extensive experiments across multiple VLM architectures demonstrate that ViMaR generates captions that are significantly more reliable, factually accurate, detailed, and explanatory, while achieving over 4$\times$ speedup compared to existing value-guided methods. Specifically, we show that ViMaR trained solely on LLaVA Mistral-7B, \textit{generalizes effectively to guide decoding in a stronger unseen model}. To further validate this, we adapt the ViMaR to steer generation in LLaVA-OneVision-Qwen2-7B, leading to consistent improvements in caption quality and demonstrating robust cross-model guidance. This cross-model generalization highlights ViMaR's flexibility and modularity, positioning it as a scalable and transferable inference-time decoding strategy. Furthermore, when ViMaR-generated captions are used for self-training, the underlying models achieve substantial gains across a broad suite of visual comprehension benchmarks, underscoring the potential of fast, accurate, and self-improving VLM pipelines.

cs.CV↗

arXiv2025

Seeing Far and Clearly: Mitigating Hallucinations in MLLMs with Attention Causal Decoding

Recent advancements in multimodal large language models (MLLMs) have significantly improved performance in visual question answering. However, they often suffer from hallucinations. In this work, hallucinations are categorized into two main types: initial hallucinations and snowball hallucinations. We argue that adequate contextual information can be extracted directly from the token interaction process. Inspired by causal inference in the decoding strategy, we propose to leverage causal masks to establish information propagation between multimodal tokens. The hypothesis is that insufficient interaction between those tokens may lead the model to rely on outlier tokens, overlooking dense and rich contextual cues. Therefore, we propose to intervene in the propagation process by tackling outlier tokens to enhance in-context inference. With this goal, we present FarSight, a versatile plug-and-play decoding strategy to reduce attention interference from outlier tokens merely by optimizing the causal mask. The heart of our method is effective token propagation. We design an attention register structure within the upper triangular matrix of the causal mask, dynamically allocating attention to capture attention diverted to outlier tokens. Moreover, a positional awareness encoding method with a diminishing masking rate is proposed, allowing the model to attend to further preceding tokens, especially for video sequence tasks. With extensive experiments, FarSight demonstrates significant hallucination-mitigating performance across different MLLMs on both image and video benchmarks, proving its effectiveness.

cs.CV↗

arXiv2025

Towards Dynamic 3D Reconstruction of Hand-Instrument Interaction in Ophthalmic Surgery

Accurate 3D reconstruction of hands and instruments is critical for vision-based analysis of ophthalmic microsurgery, yet progress has been hampered by the lack of realistic, large-scale datasets and reliable annotation tools. In this work, we introduce OphNet-3D, the first extensive RGB-D dynamic 3D reconstruction dataset for ophthalmic surgery, comprising 41 sequences from 40 surgeons and totaling 7.1 million frames, with fine-grained annotations of 12 surgical phases, 10 instrument categories, dense MANO hand meshes, and full 6-DoF instrument poses. To scalably produce high-fidelity labels, we design a multi-stage automatic annotation pipeline that integrates multi-view data observation, data-driven motion prior with cross-view geometric consistency and biomechanical constraints, along with a combination of collision-aware interaction constraints for instrument interactions. Building upon OphNet-3D, we establish two challenging benchmarks-bimanual hand pose estimation and hand-instrument interaction reconstruction-and propose two dedicated architectures: H-Net for dual-hand mesh recovery and OH-Net for joint reconstruction of two-hand-two-instrument interactions. These models leverage a novel spatial reasoning module with weak-perspective camera modeling and collision-aware center-based representation. Both architectures outperform existing methods by substantial margins, achieving improvements of over 2mm in Mean Per Joint Position Error (MPJPE) and up to 23% in ADD-S metrics for hand and instrument reconstruction, respectively.

cs.CV↗

arXiv2025

DeepChest: Dynamic Gradient-Free Task Weighting for Effective Multi-Task Learning in Chest X-ray Classification

While Multi-Task Learning (MTL) offers inherent advantages in complex domains such as medical imaging by enabling shared representation learning, effectively balancing task contributions remains a significant challenge. This paper addresses this critical issue by introducing DeepChest, a novel, computationally efficient and effective dynamic task-weighting framework specifically designed for multi-label chest X-ray (CXR) classification. Unlike existing heuristic or gradient-based methods that often incur substantial overhead, DeepChest leverages a performance-driven weighting mechanism based on effective analysis of task-specific loss trends. Given a network architecture (e.g., ResNet18), our model-agnostic approach adaptively adjusts task importance without requiring gradient access, thereby significantly reducing memory usage and achieving a threefold increase in training speed. It can be easily applied to improve various state-of-the-art methods. Extensive experiments on a large-scale CXR dataset demonstrate that DeepChest not only outperforms state-of-the-art MTL methods by 7% in overall accuracy but also yields substantial reductions in individual task losses, indicating improved generalization and effective mitigation of negative transfer. The efficiency and performance gains of DeepChest pave the way for more practical and robust deployment of deep learning in critical medical diagnostic applications. The code is publicly available at https://github.com/youssefkhalil320/DeepChest-MTL

cs.CV↗

arXiv2025

The Role of AI in Early Detection of Life-Threatening Diseases: A Retinal Imaging Perspective

Retinal imaging has emerged as a powerful, non-invasive modality for detecting and quantifying biomarkers of systemic diseases-ranging from diabetes and hypertension to Alzheimer's disease and cardiovascular disorders but current insights remain dispersed across platforms and specialties. Recent technological advances in optical coherence tomography (OCT/OCTA) and adaptive optics (AO) now deliver ultra-high-resolution scans (down to 5 μm ) with superior contrast and spatial integration, allowing early identification of microvascular abnormalities and neurodegenerative changes. At the same time, AI-driven and machine learning (ML) algorithms have revolutionized the analysis of large-scale retinal datasets, increasing sensitivity and specificity; for example, deep learning models achieve > 90 \% sensitivity for diabetic retinopathy and AUC = 0.89 for the prediction of cardiovascular risk from fundus photographs. The proliferation of mobile health technologies and telemedicine platforms further extends access, reduces costs, and facilitates community-based screening and longitudinal monitoring. Despite these breakthroughs, translation into routine practice is hindered by heterogeneous imaging protocols, limited external validation of AI models, and integration challenges within clinical workflows. In this review, we systematically synthesize the latest OCT/OCT and AO developments, AI/ML approaches, and mHealth/Tele-ophthalmology initiatives and quantify their diagnostic performance across disease domains. Finally, we propose a roadmap for multicenter protocol standardization, prospective validation trials, and seamless incorporation of retinal screening into primary and specialty care pathways-paving the way for precision prevention, early intervention, and ongoing treatment of life-threatening systemic diseases.

eess.IV↗

arXiv2025

ScalingNoise: Scaling Inference-Time Search for Generating Infinite Videos

Video diffusion models (VDMs) facilitate the generation of high-quality videos, with current research predominantly concentrated on scaling efforts during training through improvements in data quality, computational resources, and model complexity. However, inference-time scaling has received less attention, with most approaches restricting models to a single generation attempt. Recent studies have uncovered the existence of "golden noises" that can enhance video quality during generation. Building on this, we find that guiding the scaling inference-time search of VDMs to identify better noise candidates not only evaluates the quality of the frames generated in the current step but also preserves the high-level object features by referencing the anchor frame from previous multi-chunks, thereby delivering long-term value. Our analysis reveals that diffusion models inherently possess flexible adjustments of computation by varying denoising steps, and even a one-step denoising approach, when guided by a reward signal, yields significant long-term benefits. Based on the observation, we proposeScalingNoise, a plug-and-play inference-time search strategy that identifies golden initial noises for the diffusion sampling process to improve global content consistency and visual diversity. Specifically, we perform one-step denoising to convert initial noises into a clip and subsequently evaluate its long-term value, leveraging a reward model anchored by previously generated content. Moreover, to preserve diversity, we sample candidates from a tilted noise distribution that up-weights promising noises. In this way, ScalingNoise significantly reduces noise-induced errors, ensuring more coherent and spatiotemporally consistent video generation. Extensive experiments on benchmark datasets demonstrate that the proposed ScalingNoise effectively improves long video generation.

cs.LG↗

arXiv2025

TAGS: A Test-Time Generalist-Specialist Framework with Retrieval-Augmented Reasoning and Verification

Recent advances such as Chain-of-Thought prompting have significantly improved large language models (LLMs) in zero-shot medical reasoning. However, prompting-based methods often remain shallow and unstable, while fine-tuned medical LLMs suffer from poor generalization under distribution shifts and limited adaptability to unseen clinical scenarios. To address these limitations, we present TAGS, a test-time framework that combines a broadly capable generalist with a domain-specific specialist to offer complementary perspectives without any model fine-tuning or parameter updates. To support this generalist-specialist reasoning process, we introduce two auxiliary modules: a hierarchical retrieval mechanism that provides multi-scale exemplars by selecting examples based on both semantic and rationale-level similarity, and a reliability scorer that evaluates reasoning consistency to guide final answer aggregation. TAGS achieves strong performance across nine MedQA benchmarks, boosting GPT-4o accuracy by 13.8%, DeepSeek-R1 by 16.8%, and improving a vanilla 7B model from 14.1% to 23.9%. These results surpass several fine-tuned medical LLMs, without any parameter updates. The code will be available at https://github.com/JianghaoWu/TAGS.

cs.CL↗

arXiv2025

Construction and Application of Materials Knowledge Graph in Multidisciplinary Materials Science via Large Language Model

Knowledge in materials science is widely dispersed across extensive scientific literature, posing significant challenges to the efficient discovery and integration of new materials. Traditional methods, often reliant on costly and time-consuming experimental approaches, further complicate rapid innovation. Addressing these challenges, the integration of artificial intelligence with materials science has opened avenues for accelerating the discovery process, though it also demands precise annotation, data extraction, and traceability of information. To tackle these issues, this article introduces the Materials Knowledge Graph (MKG), which utilizes advanced natural language processing techniques integrated with large language models to extract and systematically organize a decade's worth of high-quality research into structured triples, contains 162,605 nodes and 731,772 edges. MKG categorizes information into comprehensive labels such as Name, Formula, and Application, structured around a meticulously designed ontology, thus enhancing data usability and integration. By implementing network-based algorithms, MKG not only facilitates efficient link prediction but also significantly reduces reliance on traditional experimental methods. This structured approach not only streamlines materials research but also lays the groundwork for more sophisticated science knowledge graphs.

cs.CL↗

arXiv2025

Rhythm of Opinion: A Hawkes-Graph Framework for Dynamic Propagation Analysis

The rapid development of social media has significantly reshaped the dynamics of public opinion, resulting in complex interactions that traditional models fail to effectively capture. To address this challenge, we propose an innovative approach that integrates multi-dimensional Hawkes processes with Graph Neural Network, modeling opinion propagation dynamics among nodes in a social network while considering the intricate hierarchical relationships between comments. The extended multi-dimensional Hawkes process captures the hierarchical structure, multi-dimensional interactions, and mutual influences across different topics, forming a complex propagation network. Moreover, recognizing the lack of high-quality datasets capable of comprehensively capturing the evolution of public opinion dynamics, we introduce a new dataset, VISTA. It includes 159 trending topics, corresponding to 47,207 posts, 327,015 second-level comments, and 29,578 third-level comments, covering diverse domains such as politics, entertainment, sports, health, and medicine. The dataset is annotated with detailed sentiment labels across 11 categories and clearly defined hierarchical relationships. When combined with our method, it offers strong interpretability by linking sentiment propagation to the comment hierarchy and temporal evolution. Our approach provides a robust baseline for future research.

cs.SI↗