arXiv subjects

Ivan A. Vartanyants

Publications and source records attributed to Ivan A. Vartanyants.

At least 19 recordsLinked to original sources

arXiv2026

Imaging aerosolized viruses with an X-ray free-electron laser using single-particle rotational invariants

X-ray free-electron lasers (XFELs) enable diffraction-before-destruction measurements of individual nanosized bioparticles, making it possible to study the structure and dynamics of non-crystalline targets under near-biologically relevant conditions. In this work, we employ rotational invariants for model-guided and ab initio three-dimensional (3D) structure determination of aerosolized bacteriophages PR772 measured with an XFEL. The rotational invariants derived from diffraction patterns collected during multiple independent XFEL experiments facilitate the characterization of similarities and structural variations within the measured ensembles of PR772 particles. Despite modest experimental resolution, we can identify various structural features of the viruses, including the asymmetric nature of capsid distortions from the perfect icosahedral shape, density variations in the encapsulated content, and an extension at one of the capsid vertices. Rotational invariants combine structural sensitivity with applicability to forward-scattering modeling and inverse problem solving, making them powerful tools for probing the structure and temporal evolution of nano- and bioparticles using an XFEL, particularly enhancing the fidelity of structural analysis at limited experimental resolution.

physics.bio-ph↗

arXiv2025

Defect migration in supercrystalline nanocomposites

Supercrystalline nanocomposites (SCNCs) are nanostructured hybrid materials with unique emergent functional properties. Given their periodically arranged building blocks, they also offer interesting parallelisms with crystalline materials. They can be processed in multiple forms and at different scales, and crosslinking their organic ligands via heat treatment leads to a remarkable boost of their mechanical properties. This study shows, via X-ray and in-situ scanning transmission (STEM) electron microscopy analyses, how each of these processing steps plays a distinct role in the generation, migration, interaction and healing of supercrystalline defects. Pressing of SCNCs into bulk pellets leads to a distortion of the otherwise fcc superlattice, while emulsion-templated self-assembly yields supraparticles (SPs) with stacking faults and size-dependent symmetries. Interestingly, heat treatment at the same temperatures as those applied for the organic crosslinking has significant effects on planar defects. Stacking faults migrate and get healed, as also confirmed via molecular dynamics simulations, and inter-supercrystalline 'grain' boundaries undergo structural changes. These rearrangements of defects at the supercrystalline scale (tens of nm) in nanocomposites with such remarkable mechanical properties (compressive strength of 100-500 MPa) provide new insights into the formation and evolution of ordered assemblies of functionalized nanoparticles.

cond-mat.mtrl-sci↗

arXiv2025

Ultrafast decoupling of polarization and strain in ferroelectric BaTiO$_3$

A fundamental understanding of the interplay between lattice structure, polarization and electrons is pivotal to the optical control of ferroelectrics. The interaction between light and matter enables the remote and wireless control of the ferroelectric polarization on the picosecond timescale, while inducing strain, i.e., lattice deformation. At equilibrium, the ferroelectric polarization is proportional to the strain, and is typically assumed to be so also out of equilibrium. Decoupling the polarization from the strain would remove the constraint of sample design and provide an effective knob to manipulate the polarization by light. Here, upon an above-bandgap laser excitation of the prototypical ferroelectric BaTiO$_3$, we induce and measure an ultrafast decoupling between polarization and strain that begins within 350 fs, by softening Ti-O bonds via charge transfer, and lasts for several tens of picoseconds. We show that the ferroelectric polarization out of equilibrium is mainly determined by photoexcited electrons, instead of the strain. This excited state could serve as a starting point to achieve stable and reversible polarization switching via THz light. Our results demonstrate a light-induced transient and reversible control of the ferroelectric polarization and offer a pathway to control by light both electric and magnetic degrees of freedom in multiferroics.

cond-mat.mtrl-sci↗

arXiv2024

Theoretical Analysis of the Coherence Properties of a Grating

In this work we aim to clarify theoretically the spatial coherence properties of the x-ray beam in the focal plane after interaction with a variable line space (VLS) grating. Assuming that the VLS grating is oriented horizontally, we are interested in the coherence properties of the beam in the vertical dispersion direction. We first consider a fully spatially coherent x-ray beam illuminating the grating. We show that the spatial coherence properties in the focal plane depend on the bandwidth of the incoming radiation. Being fully spatially coherent up to the VLS grating, the spatial coherence properties degrade in the focal plane of the VLS grating. We attribute this to coupling of the spatial and frequency components in the focal plane of the grating. Next, we examine partially coherent x-ray beams incident on a VLS grating. We assume that this radiation is of the Gaussian Schell-model type and obtain an analytical expression for the spatial coherence properties of the beam in the focal plane of the VLS grating for such a field. Next, we consider a monochromator setting that is provided by installing slits in the focal plane of the VLS grating and examine the degree of coherence in this case. Finally, we evaluate the degree of coherence at different apertures of the exit slits, assuming coherent illumination of the grating and a bandwidth of 1.7 10^{-4}.

physics.optics↗

arXiv2024

Resolving the pressure induced 'self-insertion' in skutterudite CoSb3

CoSb3, a skutterudite compound, is key in studying thermoelectric materials. Under compression, it undergoes a 'self-insertion' isostructural transition, redistributing large Sb atoms among crystallographic sites. We investigated CoSb3's structural stability up to 70 GPa using single crystal X-ray diffraction and high-resolution X-ray scattering, including Bragg Coherent Diffraction Imaging. We examined the material in three pressure transmitting media (PTMs), exploring how PTMs and nonhydrostatic stresses affect CoSb3. Notably, the 'self-insertion' transition may reduce or even make compressibility negative. Additionally, we report a previously unknown phase transformation from cubic Im-3 to trigonal R-3 above 40 GPa and discuss the phases' distinctive behaviors.

cond-mat.mtrl-sci↗

arXiv2024

Dynamic X-ray coherent diffraction analysis: bridging the timescales between imaging and photon correlation spectroscopy

The advent of diffraction limited sources and developments in detector technology opens up new possibilities for the study of materials in situ and operando. Coherent X-ray diffraction techniques such as coherent X-ray diffractive imaging (CXDI) and X-ray photon correlation spectroscopy (XPCS) are capable for this purpose and provide complimentary information, although due to signal-to-noise requirements, their simultaneous demonstration has been limited. Here, we demonstrate a strategy for the simultaneous use of CXDI and XPCS to study in situ the Brownian motion of colloidal gold nanoparticles of 200 nm diameter suspended in a glycerol-water mixture. We visualise the process of agglomeration, examine the spatiotemporal space accessible with the combination of techniques, and demonstrate CXDI with 22 ms temporal resolution.

cond-mat.mes-hall↗

arXiv2023

Probing the Surface Polarization of Ferroelectric Thin Films by X-ray Standing Waves

Understanding the mechanisms underlying a stable polarization at the surface of ferroelectric thin films is of particular importance both from a fundamental point of view and to achieve control of the surface polarization itself. In this study, it is demonstrated that the X-ray standing wave technique allows the polarization near the surface of a ferroelectric thin film to be probed directly. The X-ray standing wave technique is employed to determine, with picometer accuracy, Ti and Ba atomic positions near the surface of three differently strained $\mathrm{BaTiO_3}$ thin films grown on scandate substrates, with a $\mathrm{SrRuO_3}$ film as bottom electrode. This technique gives direct access to atomic positions, and thus to the local ferroelectric polarization, within the first 3 unit cells below the surface. By employing X-ray photoelectron spectroscopy, a detailed overview of the oxygen-containing species adsorbed on the surface, upon exposure to ambient conditions, is obtained. The combination of structural and spectroscopic information allows us to conclude on the most plausible mechanisms that stabilize the surface polarization in the three samples under study. The different amplitude and orientation of the local ferroelectric polarizations are associated with surface charges attributed to the type, amount and spatial distribution of the oxygen-containing adsorbates.

cond-mat.mtrl-sci↗

arXiv2023

Revealing the impact of polystyrene-functionalization of Au octahedral nanocrystals of different sizes on formation and structure of mesocrystals

The self-assembly of anisotropic nanocrystals (stabilized by organic capping molecules) with pre-selected composition, size, and shape allows for the creation of nanostructured materials with unique structures and features. For such a material, the shape and packing of the individual nanoparticles play an important role. This work presents a synthesis procedure for ω-thiol-terminated polystyrene (PS-SH) functionalized gold nanooctahedra of variable size (edge length 37, 46, 58, and 72 nm). The impact of polymer chain length (Mw: 11k, 22k, 43k, and 66k g/mol) on the growth of colloidal crystals (e.g. mesocrystals) and their resulting crystal structure is investigated. Small-angle X-ray scattering (SAXS) and scanning transmission electron microscopy (STEM) methods provide a detailed structural examination of the self-assembled faceted mesocrystals based on octahedral gold nanoparticles of different size and surface functionalization. Three-dimensional angular X-ray cross-correlation analysis (AXCCA) enables high-precision determination of the superlattice structure and relative orientation of nanoparticles in mesocrystals. This approach allows us to perform non-destructive characterization of mesocrystalline materials and reveals their structure with resolution down to the nanometer scale.

cond-mat.mtrl-sci↗

arXiv2023

Bragg Coherent Modulation Imaging for Highly Strained Nanocrystals-A Numerical Study

Bragg coherent diffraction imaging (BCDI) is a unique and powerful method for tracking three-dimensional strain fields non-destructively. While BCDI has been successfully applied to many scientific research fields and receives high demands, the reconstructed results for highly strained crystals are still subject to big uncertainties. Here, the progress in improving the suitability of BCDI for general samples by exploiting wavefront modulation is reported. Extensive numerical simulations demonstrate that significant improvements over the current method for reconstructing highly strained model nanocrystals can be achieved. The proposed method highly suppresses the appearance of ambiguous solutions and exhibits fast convergence and high robustness in phase retrieval. Possible experimental difficulties in implementing this method are discussed in detail.

physics.app-ph↗

arXiv2023

FEL stochastic spectroscopy revealing silicon bond softening dynamics

Time-resolved X-ray Emission/Absorption Spectroscopy (Tr-XES/XAS) is an informative experimental tool sensitive to electronic dynamics in materials, widely exploited in diverse research fields. Typically, Tr-XES/XAS requires X-ray pulses with both a narrow bandwidth and sub-picosecond pulse duration, a combination that in principle finds its optimum with Fourier transform-limited pulses. In this work, we explore an alternative xperimental approach, capable of simultaneously retrieving information about unoccupied (XAS) and occupied (XES) states from the stochastic fluctuations of broadband extreme ultraviolet pulses of a free-electron laser. We used this method, in combination with singular value decomposition and Tikhonov regularization procedures, to determine the XAS/XES response from a crystalline silicon sample at the L2,3-edge, with an energy resolution of a few tens of meV. Finally, we combined this spectroscopic method with a pump-probe approach to measure structural and electronic dynamics of a silicon membrane. Tr-XAS/XES data obtained after photoexcitation with an optical laser pulse at 390 nm allowed us to observe perturbations of the band structure, which are compatible with the formation of the predicted precursor state of a non-thermal solid-liquid phase transition associated with a bond softening phenomenon.

cond-mat.mtrl-sci↗

arXiv2023

Infrared-induced ultrafast melting of nanostructured platinum films probed by an X-ray free-electron laser

Understanding melting in metals is a hot topic of present research. This may be accomplished by pumping the system with infrared (IR) laser radiation, and probing it with hard X-rays produced by an X-ray Free-Electron Laser (XFEL). In this work we studied nanostructured polycrystalline thin films of platinum that were illuminated by IR radiation of increasing fluences. We characterized the structural response as well as the nucleation and propagation of the liquid phase as a function of time delay between the IR pump and X-ray probe. We observed partial melting of the samples for IR fluences higher than 200 mJ$\cdot$cm$^{-2}$. To fit the contribution of the liquid phase to the scattering pattern in platinum we applied a model of liquid metal. The two-temperature model simulations were performed to understand the solid-state fraction of the sample heating process as a function of time delay and fluence.

cond-mat.mtrl-sci↗

arXiv2022

High energy-resolution transient ghost absorption spectroscopy

We demonstrate the measurement of ultrafast dynamics using ghost spectroscopy and a pump-probe approach with an optical pump and a short-wavelength radiation probe. The ghost spectroscopy approach is used to overcome the challenge of the strong intensity and spectrum fluctuations at free-electron lasers and to provide high -spectral resolution, which enables the measurement of small energy shifts in the absorption spectrum. We exploit the high resolution to explore the dynamics of the charge carrier excitations and relaxations and their impact on the photoinduced structural changes in silicon by measuring the variation of the absorption spectrum of a Si(100) membrane near the silicon L2,3 edge and the accompanying edge shifts in response to the optical illumination.

physics.optics↗

arXiv2022

The structure of Tick-borne Encephalitis virus determined at X-Ray Free-Electron Lasers. Simulations

The study of the structure of viruses by X-ray free-electron lasers (XFEL) attracts more attention in recent decades. Such experiments are based on the collection of two-dimensional diffraction patterns measured at the detector after diffraction of femtosecond X-ray pulses on biological samples. In order to prepare the experiment at the European XFEL we simulated the diffraction data for the tick-borne encephalitis virus (TBEV) with different parameters and identified their optimal values. Following necessary steps of a well-established data processing pipeline, the structure of TBEV was obtained and the efficiency of the used methods was demonstrated.

physics.bio-ph↗

arXiv2022

SAXS Investigation of Core-Shell Microgels with High Scattering Contrast Cores: Access to Structure Factor and Volume Fraction

To explore dense packings of soft colloids, scattering experiments are ideal to access the structure factor. However, for soft microgels determination of the structure factor is difficult because of the low contrast of the polymer network and potential microgel interpenetration and deformation that change the form factor contribution. Here, we employ small-angle X-ray scattering (SAXS) to study soft, thermoresponsive microgels with poly-N-isopropylacrylamide (PNIPAM) shells and gold nanoparticle cores. The scattering of the gold cores dominates the scattering patterns and allows precise determination of the microgel volume fraction over a broad range of concentrations. At high volume fractions we find distinct patterns with sharp Bragg peaks allowing extraction of the structure factor and characterization of the phases combined with UV-Vis spectroscopy. The unique scattering contrast of our core-shell microgels combined with SAXS opens up new ways to investigate dense packings of soft microgels including in situ studies of phase transitions.

cond-mat.soft↗

arXiv2022

High-resolution absorption measurements with free-electron lasers using ghost spectroscopy

We demonstrate a simple and robust high-resolution ghost spectroscopy approach for x-ray and extreme ultraviolet absorption spectroscopy at free-electron laser sources. Our approach requires an on-line spectrometer before the sample and a downstream bucket detector. We use this method to measure the absorption spectrum of silicon, silicon carbide and silicon nitride membranes in the vicinity of the silicon L2,3-edge. We show that ghost spectroscopy allows the high-resolution reconstruction of the sample spectral response using a coarse energy scan with self-amplified spontaneous emission radiation. For the conditions of our experiment the energy resolution of the ghost-spectroscopy reconstruction is higher than the energy resolution reached by scanning the energy range by narrow spectral bandwidth radiation produced by the seeded free-electron laser. When we set the photon energy resolution of the ghost spectroscopy to be equal to the resolution of the measurement with the seeded radiation, the measurement time with the ghost spectroscopy method is shorter than scanning the photon energy with seeded radiation. The exact conditions for which ghost spectroscopy can provide higher resolution at shorter times than measurement with narrow band scans depend on the details of the measurements and on the properties of the samples and should be addressed in future studies.

physics.ins-det↗

arXiv2022

Angular X-ray Cross-Correlation Analysis Applied to the Scattering Data in 3D Reciprocal Space from a Single Crystal

We propose an application of the Angular X-ray Cross-Correlation Analysis (AXCCA) to the scattered intensity distribution measured in three-dimensional (3D) reciprocal space from a single crystalline sample. Contrary to the conventional application of AXCCA, when averaging over many two-dimensional (2D) diffraction patterns collected from different randomly oriented samples is required, the proposed approach gives an insight into the structure of a single specimen. This is particularly useful in studies of defect-reach samples that are unlikely to have the same structure. Here, we demonstrate an example of a qualitative structure determination of a colloidal crystal on the simulated as well as experimentally measured 3D scattered intensity distributions.

cond-mat.mes-hall↗

arXiv2022

In-situ Characterization of Crystallization and Melting of Soft, Thermoresponsive Microgels by Small-Angle X-ray Scattering

Depending on the volume fraction and interparticle interactions, colloidal suspensions can form different phases, ranging from fluids, crystals, and glasses to gels. For soft microgels that are made from thermoresponsive polymers, the volume fraction can be tuned by temperature, making them excellent systems to experimentally study phase transitions in dense colloidal suspensions. However, investigations of phase transitions at high particle concentration and across the volume phase transition temperature in particular, are challenging due to the deformability and possibility for interpenetration between microgels. Here, we investigate the dense phases of composite core-shell microgels that have a small gold core and a thermoresponsive microgel shell. Employing Ultra Small Angle X-ray Scattering, we make use of the strong scattering signal from the gold cores with respect to the almost negligible signal from the shells. By changing the temperature we study the freezing and melting transitions of the system in-situ. Using Bragg peak analysis and the Williamson-Hall method, we characterize the phase transitions in detail. We show that the system crystallizes into an rhcp structure with different degrees of in-plane and out-of-plane stacking disorder that increase upon particle swelling. We further find that the melting process is distinctly different, where the system separates into two different crystal phases with different melting temperatures and interparticle interactions.

cond-mat.soft↗

arXiv2021

Impact of the Ligand Shell on Structural Changes and Decomposition of All-Inorganic Mixed-Halide Perovskite (CsPbX3) Nanocrystals under X-Ray Illumination

We show that the decomposition of caesium lead halide perovskite nanocrystals under continuous X-ray illumination depends on the surface ligand. For oleic acid/oleylamine, we observe a fast decay accompanied by the formation of elemental lead and halogen. Upon surface functionalization with a metal porphyrin derivate, the decay is markedly slower and involves the disproportionation of lead to Pb0 and Pb3+. In both cases, the decomposition is preceded by a contraction of the atomic lattice, which appears to initiate the decay. We find that the metal porphyrin derivative induces a strong surface dipole on the nanocrystals, which we hold responsible for the altered and slower decomposition pathway. These results are important for application of lead halide perovskite nanocrystals in X-ray scintillators.

cond-mat.mtrl-sci↗