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J. M. Yeomans

Publications and source records attributed to J. M. Yeomans.

At least 19 recordsLinked to original sources
arXiv2011

Complex dynamics of knotted filaments in shear flow

Coarse-grained simulations are used to demonstrate that knotted filaments in shear flow at zero Reynolds number exhibit remarkably rich dynamic behaviour. For stiff filaments that are weakly deformed by the shear forces, the knotted filaments rotate like rigid objects in the flow. But away from this regime the interplay between between shear forces and the flexibility of the filament leads to intricate regular and chaotic modes of motion that can be divided into distinct families. The set of accessible mode families depends to first order on a dimensionless number that relates the filament length, the elastic modulus, the friction per unit length and the shear rate.

cond-mat.soft↗
arXiv2010

Confinement of knotted polymers in a slit

We investigate the effect of knot type on the properties of a ring polymer confined to a slit. For relatively wide slits, the more complex the knot, the more the force exerted by the polymer on the walls is decreased compared to an unknotted polymer of the same length. For more narrow slits the opposite is true. The crossover between these two regimes is, to first order, at smaller slit width for more complex knots. However, knot topology can affect these trends in subtle ways. Besides the force exerted by the polymers, we also study other quantities such as the monomer-density distribution across the slit and the anisotropic radius of gyration.

cond-mat.soft↗
arXiv2010

Modelling receding contact lines on superhydrophobic surfaces

We use mesoscale simulations to study the depinning of a receding contact line on a superhydrophobic surface patterned by a regular array of posts. In order that the simulations are feasible, we introduce a novel geometry where a column of liquid dewets a capillary bounded by a superhydrophobic plane which faces a smooth hydrophilic wall of variable contact angle. We present results for the dependence of the depinning angle on the shape and spacing of the posts, and discuss the form of the meniscus at depinning. We find, in agreement with [17], that the local post concentration is a primary factor in controlling the depinning angle, and show that the numerical results agree well with recent experiments. We also present two examples of metastable pinned configurations where the posts are partially wet.

cond-mat.soft↗
arXiv2010

Superhydrophobicity on hairy surfaces

We investigate the wetting properties of surfaces patterned with fine elastic hairs, with an emphasis on identifying superhydrophobic states on hydrophilic hairs. We formulate a two dimensional model of a large drop in contact with a row of equispaced elastic hairs and, by minimising the free energy of the model, identify the stable and metastable states. In particular we concentrate on "partially suspended" states, where the hairs bend to support the drop -- singlet states where all hairs bend in the same direction, and doublet states where neighbouring hairs bend in opposite directions -- and find the limits of stability of these configurations in terms of material contact angle, hair flexibility, and system geometry. The drop can remain suspended in a singlet state at hydrophilic contact angles, but doublets exist only when the hairs are hydrophobic. The system is more likely to evolve into a singlet state if the hairs are inclined at the root. We discuss how, under limited circumstances, the results can be modified to describe an array of hairs in three dimensions. We find that now both singlets and doublets can exhibit superhydrophobic behaviour on hydrophilic hairs. We discuss the limitations of our approach and the directions for future work.

cond-mat.soft↗
arXiv2010

Drop dynamics on hydrophobic and superhydrophobic surfaces

We investigate the dynamics of micron-scale drops pushed across a hydrophobic or superhydrophobic surface. The velocity profile across the drop varies from quadratic to linear with increasing height, indicating a crossover from a sliding to a rolling motion. We identify a mesoscopic slip capillary number which depends only on the motion of the contact line and the shape of the drop, and show that the angular velocity of the rolling increases with increasing viscosity. For drops on superhydrophobic surfaces we argue that a tank treading advance from post to post replaces the diffusive relaxation that allows the contact line to move on smooth surfaces. Hence drops move on superhydrophobic surfaces more quickly than on smooth geometries.

cond-mat.soft↗
arXiv2010

Effect of topology on dynamics of knots in polymers under tension

We use computer simulations to compare the dynamical behaviour of torus and even-twist knots in polymers under tension. The knots diffuse through a mechanism similar to reptation. Their friction coefficients grow linearly with average knot length for both knot types. For similar complexity, however, the torus knots diffuse faster than the even twist knots. The knot-length auto-correlation function exhibits a slow relaxation time that can be linked to a breathing mode. Its timescale depends on knot type, being typically longer for torus than for even-twist knots. These differences in dynamical behaviour are interpreted in terms of topological features of the knots.

cond-mat.soft↗
arXiv2009

Modelling capillary filling dynamics using lattice Boltzmann simulations

We investigate the dynamics of capillary filling using two lattice Boltzmann schemes: a liquid-gas model and a binary model. The simulation results are compared to the well-known Washburn's law, which predicts that the filled length of the capillary scales with time as $l \propto t^{1/2}$. We find that the liquid-gas model does not reproduce Washburn's law due to condensation of the gas phase at the interface, which causes the asymptotic behaviour of the capillary penetration to be faster than $t^{1/2}. The binary model, on the other hand, captures the correct scaling behaviour when the viscosity ratio between the two phases is sufficiently high.

physics.flu-dyn↗
arXiv2009

Imbibition through an array of triangular posts

We present and interpret simulation results showing how a fluid moves on a hydrophilic substrate patterned by a square array of triangular posts. We demonstrate that the shape of the posts leads to anisotropic spreading, and discuss how this is influenced by the different ways in which the posts can pin the advancing front.

cond-mat.soft↗
arXiv2009

Capillary filling in microchannels patterned by posts

We investigate the capillary filling of three dimensional micro-channels with surfaces patterned by posts of square cross section. We show that pinning on the edges of the posts suppresses, and can halt, capillary filling. We stress the importance of the channel walls in controlling whether filling can occur. In particular for channels higher than the distance between adjacent posts, filling occurs for contact angles less than a threshold angle \sim 55 deg., independent of the height of the channel.

cond-mat.soft↗
arXiv2009

Numerical Results for the Blue Phases

We review recent numerical work investigating the equilibrium phase diagram, and the dynamics, of the cholesteric blue phases. In equilibrium numerical results confirm the predictions of the classic analytical theories, and extend them to incorporate different values of the elastic constants, or the effects of an applied electric field. There is a striking increase in the stability of blue phase I in systems where the cholesteric undergoes helical sense inversion, and the anomalous electrostriction observed in this phase is reproduced. Solving the equations of motion allows us to present results for the phase transition kinetics of blue phase I under dielectric or flexoelectric coupling to an applied electric field. We also present simulations of the blue phases in a flow field, showing how the disclination network acts to oppose the flow. The results are based on the Landau-de Gennes exapnsion of the liquid crystal free energy: that such a simple and elegant theory can predict such complex and subtle physical behaviour is remarkable.

cond-mat.soft↗
arXiv2009

Modelling the corrugation of the three-phase contact line perpendicular to a chemically striped substrate

We model an infinitely long liquid bridge confined between two plates chemically patterned by stripes of same width and different contact angle, where the three-phase contact line runs, on average, perpendicular to the stripes. This allows us to study the corrugation of a contact line in the absence of pinning. We find that, if the spacing between the plates is large compared to the length scale of the surface patterning, the cosine of the macroscopic contact angle corresponds to an average of cosines of the intrinsic angles of the stripes, as predicted by the Cassie equation. If, however, the spacing becomes of order the length scale of the pattern there is a sharp crossover to a regime where the macroscopic contact angle varies between the intrinsic contact angle of each stripe, as predicted by the local Young equation. The results are obtained using two numerical methods, Lattice Boltzmann (a diffuse interface approach) and Surface Evolver (a sharp interface approach), thus giving a direct comparison of two popular numerical approaches to calculating drop shapes when applied to a non-trivial contact line problem. We find that the two methods give consistent results if we take into account a line tension in the free energy. In the lattice Boltzmann approach, the line tension arises from discretisation effects at the diffuse three phase contact line.

cond-mat.soft↗
arXiv2009

Anisotropic hysteresis on ratcheted superhydrophobic surfaces

We consider the equilibrium behaviour and dynamics of liquid drops on a superhydrophobic surface patterned with sawtooth ridges or posts. Due to the anisotropic geometry of the surface patterning, the contact line can preferentially depin from one side of the ratchets, leading to a novel, partially suspended, superhydrophobic state. In both this configuration, and the collapsed state, the drops show strong directional contact angle hysteresis as they are pushed across the surface. The easy direction is, however, different for the two states. This observation allows us to interpret recent experiments describing the motion of water drops on butterfly wings.

cond-mat.soft↗
arXiv2009

Knot-controlled ejection of a polymer from a virus capsid

We present a numerical study of the effect of knotting on the ejection of flexible and semiflexible polymers from a spherical, virus-like capsid. The polymer ejection rate is primarily controlled by the knot, which moves to the hole in the capsid and then acts as a ratchet. Polymers with more complex knots eject more slowly and, for large knots, the knot type, and not the flexibility of the polymer, determines the rate of ejection. We discuss the relation of our results to the ejection of DNA from viral capsids and conjecture that this process has the biological advantage of unknotting the DNA before it enters a cell.

q-bio.BM↗
arXiv2008

Contact line dynamics in binary lattice Boltzmann simulations

We show that, when a single relaxation time lattice Boltzmann algorithm is used to solve the hydrodynamic equations of a binary fluid for which the two components have different viscosities, strong spurious velocities in the steady state lead to incorrect results for the equilibrium contact angle. We identify the origins of these spurious currents, and demonstrate how the results can be greatly improved by using a lattice Boltzmann method based on a multiple-relaxation-time algorithm. By considering capillary filling we describe the dependence of the advancing contact angle on the interface velocity.

physics.comp-ph↗
arXiv2008

Spontaneous flow states in active nematics: a unified picture

Continuum hydrodynamic models of active liquid crystals have been used to describe dynamic self-organising systems such as bacterial swarms and cytoskeletal gels. A key prediction of such models is the existence of self-stabilising kink states that spontaneously generate fluid flow in quasi-one dimensional channels. Using simple stability arguments and numerical calculations we extend previous studies to give a complete characterisation of the phase space for both contractile and extensile particles (ie pullers and pushers) moving in a narrow channel as a function of their flow alignment properties and initial orientation. This gives a framework for unifying many of the results in the literature. We describe the response of the kink states to an imposed shear, and investigate how allowing the system to be polar modifies its dynamical behaviour.

cond-mat.soft↗
arXiv2008

Scattering of low Reynolds number swimmers

We describe the consequences of time reversal invariance of the Stokes' equations for the hydrodynamic scattering of two low Reynolds number swimmers. For swimmers that are related to each other by a time reversal transformation this leads to the striking result that the angle between the two swimmers is preserved by the scattering. The result is illustrated for the particular case of a linked-sphere model swimmer. For more general pairs of swimmers, not related to each other by time reversal, we find hydrodynamic scattering can alter the angle between their trajectories by several tens of degrees. For two identical contractile swimmers this can lead to the formation of a bound state.

cond-mat.soft↗
arXiv2008

Capillary filling in patterned channels

We show how the capillary filling of microchannels is affected by posts or ridges on the sides of the channels. Ridges perpendicular to the flow direction introduce contact line pinning which slows, or sometimes prevents, filling; whereas ridges parallel to the flow provide extra surface which may enhances filling. Patterning the microchannel surface with square posts has little effect on the ability of a channel to fill for equilibrium contact angle $θ_e \lesssim 30^{\mathrm{o}}$. For $θ_e \gtrsim 60^{\mathrm{o}}$, however, even a small number of posts can pin the advancing liquid front.

physics.flu-dyn↗