arXiv subjects

Jianfeng Feng

Publications and source records attributed to Jianfeng Feng.

At least 55 records · Page 3Linked to original sources

arXiv2024

Vision Transformers: From Semantic Segmentation to Dense Prediction

The emergence of vision transformers (ViTs) in image classification has shifted the methodologies for visual representation learning. In particular, ViTs learn visual representation at full receptive field per layer across all the image patches, in comparison to the increasing receptive fields of CNNs across layers and other alternatives (e.g., large kernels and atrous convolution). In this work, for the first time we explore the global context learning potentials of ViTs for dense visual prediction (e.g., semantic segmentation). Our motivation is that through learning global context at full receptive field layer by layer, ViTs may capture stronger long-range dependency information, critical for dense prediction tasks. We first demonstrate that encoding an image as a sequence of patches, a vanilla ViT without local convolution and resolution reduction can yield stronger visual representation for semantic segmentation. For example, our model, termed as SEgmentation TRansformer (SETR), excels on ADE20K (50.28% mIoU, the first position in the test leaderboard on the day of submission) and performs competitively on Cityscapes. However, the basic ViT architecture falls short in broader dense prediction applications, such as object detection and instance segmentation, due to its lack of a pyramidal structure, high computational demand, and insufficient local context. For tackling general dense visual prediction tasks in a cost-effective manner, we further formulate a family of Hierarchical Local-Global (HLG) Transformers, characterized by local attention within windows and global-attention across windows in a pyramidal architecture. Extensive experiments show that our methods achieve appealing performance on a variety of dense prediction tasks (e.g., object detection and instance segmentation and semantic segmentation) as well as image classification.

cs.CV↗

arXiv2024

MinD-3D: Reconstruct High-quality 3D objects in Human Brain

In this paper, we introduce Recon3DMind, an innovative task aimed at reconstructing 3D visuals from Functional Magnetic Resonance Imaging (fMRI) signals, marking a significant advancement in the fields of cognitive neuroscience and computer vision. To support this pioneering task, we present the fMRI-Shape dataset, which includes data from 14 participants and features 360-degree videos of 3D objects to enable comprehensive fMRI signal capture across various settings, thereby laying a foundation for future research. Furthermore, we propose MinD-3D, a novel and effective three-stage framework specifically designed to decode the brain's 3D visual information from fMRI signals, demonstrating the feasibility of this challenging task. The framework begins by extracting and aggregating features from fMRI frames through a neuro-fusion encoder, subsequently employs a feature bridge diffusion model to generate visual features, and ultimately recovers the 3D object via a generative transformer decoder. We assess the performance of MinD-3D using a suite of semantic and structural metrics and analyze the correlation between the features extracted by our model and the visual regions of interest (ROIs) in fMRI signals. Our findings indicate that MinD-3D not only reconstructs 3D objects with high semantic relevance and spatial similarity but also significantly enhances our understanding of the human brain's capabilities in processing 3D visual information. Project page at: https://jianxgao.github.io/MinD-3D.

cs.CV↗

arXiv2024

NeuroPictor: Refining fMRI-to-Image Reconstruction via Multi-individual Pretraining and Multi-level Modulation

Recent fMRI-to-image approaches mainly focused on associating fMRI signals with specific conditions of pre-trained diffusion models. These approaches, while producing high-quality images, capture only a limited aspect of the complex information in fMRI signals and offer little detailed control over image creation. In contrast, this paper proposes to directly modulate the generation process of diffusion models using fMRI signals. Our approach, NeuroPictor, divides the fMRI-to-image process into three steps: i) fMRI calibrated-encoding, to tackle multi-individual pre-training for a shared latent space to minimize individual difference and enable the subsequent multi-subject training; ii) fMRI-to-image multi-subject pre-training, perceptually learning to guide diffusion model with high- and low-level conditions across different individuals; iii) fMRI-to-image single-subject refining, similar with step ii but focus on adapting to particular individual. NeuroPictor extracts high-level semantic features from fMRI signals that characterizing the visual stimulus and incrementally fine-tunes the diffusion model with a low-level manipulation network to provide precise structural instructions. By training with about 67,000 fMRI-image pairs from various individuals, our model enjoys superior fMRI-to-image decoding capacity, particularly in the within-subject setting, as evidenced in benchmark datasets. Our code and model are available at https://jingyanghuo.github.io/neuropictor/.

cs.CV↗

arXiv2024

RoDyn-SLAM: Robust Dynamic Dense RGB-D SLAM with Neural Radiance Fields

Leveraging neural implicit representation to conduct dense RGB-D SLAM has been studied in recent years. However, this approach relies on a static environment assumption and does not work robustly within a dynamic environment due to the inconsistent observation of geometry and photometry. To address the challenges presented in dynamic environments, we propose a novel dynamic SLAM framework with neural radiance field. Specifically, we introduce a motion mask generation method to filter out the invalid sampled rays. This design effectively fuses the optical flow mask and semantic mask to enhance the precision of motion mask. To further improve the accuracy of pose estimation, we have designed a divide-and-conquer pose optimization algorithm that distinguishes between keyframes and non-keyframes. The proposed edge warp loss can effectively enhance the geometry constraints between adjacent frames. Extensive experiments are conducted on the two challenging datasets, and the results show that RoDyn-SLAM achieves state-of-the-art performance among recent neural RGB-D methods in both accuracy and robustness.

cs.RO↗

arXiv2024

Toward stochastic neural computing

The highly irregular spiking activity of cortical neurons and behavioral variability suggest that the brain could operate in a fundamentally probabilistic way. Mimicking how the brain implements and learns probabilistic computation could be a key to developing machine intelligence that can think more like humans. In this work, we propose a theory of stochastic neural computing (SNC) in which streams of noisy inputs are transformed and processed through populations of nonlinearly coupled spiking neurons. To account for the propagation of correlated neural variability, we derive from first principles a moment embedding for spiking neural network (SNN). This leads to a new class of deep learning model called the moment neural network (MNN) which naturally generalizes rate-based neural networks to second order. As the MNN faithfully captures the stationary statistics of spiking neural activity, it can serve as a powerful proxy for training SNN with zero free parameters. Through joint manipulation of mean firing rate and noise correlations in a task-driven way, the model is able to learn inference tasks while simultaneously minimizing prediction uncertainty, resulting in enhanced inference speed. We further demonstrate the application of our method to Intel's Loihi neuromorphic hardware. The proposed theory of SNC may open up new opportunities for developing machine intelligence capable of computing uncertainty and for designing unconventional computing architectures.

cs.NE↗

arXiv2024

Towards free-response paradigm: a theory on decision-making in spiking neural networks

The energy-efficient and brain-like information processing abilities of Spiking Neural Networks (SNNs) have attracted considerable attention, establishing them as a crucial element of brain-inspired computing. One prevalent challenge encountered by SNNs is the trade-off between inference speed and accuracy, which requires sufficient time to achieve the desired level of performance. Drawing inspiration from animal behavior experiments that demonstrate a connection between decision-making reaction times, task complexity, and confidence levels, this study seeks to apply these insights to SNNs. The focus is on understanding how SNNs make inferences, with a particular emphasis on untangling the interplay between signal and noise in decision-making processes. The proposed theoretical framework introduces a new optimization objective for SNN training, highlighting the importance of not only the accuracy of decisions but also the development of predictive confidence through learning from past experiences. Experimental results demonstrate that SNNs trained according to this framework exhibit improved confidence expression, leading to better decision-making outcomes. In addition, a strategy is introduced for efficient decision-making during inference, which allows SNNs to complete tasks more quickly and can use stopping times as indicators of decision confidence. By integrating neuroscience insights with neuromorphic computing, this study opens up new possibilities to explore the capabilities of SNNs and advance their application in complex decision-making scenarios.

cs.NE↗

arXiv2024

Decoding Continuous Character-based Language from Non-invasive Brain Recordings

Deciphering natural language from brain activity through non-invasive devices remains a formidable challenge. Previous non-invasive decoders either require multiple experiments with identical stimuli to pinpoint cortical regions and enhance signal-to-noise ratios in brain activity, or they are limited to discerning basic linguistic elements such as letters and words. We propose a novel approach to decoding continuous language from single-trial non-invasive fMRI recordings, in which a three-dimensional convolutional network augmented with information bottleneck is developed to automatically identify responsive voxels to stimuli, and a character-based decoder is designed for the semantic reconstruction of continuous language characterized by inherent character structures. The resulting decoder can produce intelligible textual sequences that faithfully capture the meaning of perceived speech both within and across subjects, while existing decoders exhibit significantly inferior performance in cross-subject contexts. The ability to decode continuous language from single trials across subjects demonstrates the promising applications of non-invasive language brain-computer interfaces in both healthcare and neuroscience.

cs.CL↗

arXiv2024

Softmax-free Linear Transformers

Vision transformers (ViTs) have pushed the state-of-the-art for visual perception tasks. The self-attention mechanism underpinning the strength of ViTs has a quadratic complexity in both computation and memory usage. This motivates the development of approximating the self-attention at linear complexity. However, an in-depth analysis in this work reveals that existing methods are either theoretically flawed or empirically ineffective for visual recognition. We identify that their limitations are rooted in the inheritance of softmax-based self-attention during approximations, that is, normalizing the scaled dot-product between token feature vectors using the softmax function. As preserving the softmax operation challenges any subsequent linearization efforts. By this insight, a family of Softmax-Free Transformers (SOFT) are proposed. Specifically, a Gaussian kernel function is adopted to replace the dot-product similarity, enabling a full self-attention matrix to be approximated under low-rank matrix decomposition. For computational robustness, we estimate the Moore-Penrose inverse using an iterative Newton-Raphson method in the forward process only, while calculating its theoretical gradients only once in the backward process. To further expand applicability (e.g., dense prediction tasks), an efficient symmetric normalization technique is introduced. Extensive experiments on ImageNet, COCO, and ADE20K show that our SOFT significantly improves the computational efficiency of existing ViT variants. With linear complexity, much longer token sequences are permitted by SOFT, resulting in superior trade-off between accuracy and complexity. Code and models are available at https://github.com/fudan-zvg/SOFT.

cs.CV↗

arXiv2024

Probabilistic computation and uncertainty quantification with emerging covariance

Building robust, interpretable, and secure AI system requires quantifying and representing uncertainty under a probabilistic perspective to mimic human cognitive abilities. However, probabilistic computation presents significant challenges for most conventional artificial neural network, as they are essentially implemented in a deterministic manner. In this paper, we develop an efficient probabilistic computation framework by truncating the probabilistic representation of neural activation up to its mean and covariance and construct a moment neural network that encapsulates the nonlinear coupling between the mean and covariance of the underlying stochastic network. We reveal that when only the mean but not the covariance is supervised during gradient-based learning, the unsupervised covariance spontaneously emerges from its nonlinear coupling with the mean and faithfully captures the uncertainty associated with model predictions. Our findings highlight the inherent simplicity of probabilistic computation by seamlessly incorporating uncertainty into model prediction, paving the way for integrating it into large-scale AI systems.

cs.LG↗

arXiv2024

Learn to integrate parts for whole through correlated neural variability

Sensory perception originates from the responses of sensory neurons, which react to a collection of sensory signals linked to various physical attributes of a singular perceptual object. Unraveling how the brain extracts perceptual information from these neuronal responses is a pivotal challenge in both computational neuroscience and machine learning. Here we introduce a statistical mechanical theory, where perceptual information is first encoded in the correlated variability of sensory neurons and then reformatted into the firing rates of downstream neurons. Applying this theory, we illustrate the encoding of motion direction using neural covariance and demonstrate high-fidelity direction recovery by spiking neural networks. Networks trained under this theory also show enhanced performance in classifying natural images, achieving higher accuracy and faster inference speed. Our results challenge the traditional view of neural covariance as a secondary factor in neural coding, highlighting its potential influence on brain function.

q-bio.NC↗

arXiv2023

fMRI-PTE: A Large-scale fMRI Pretrained Transformer Encoder for Multi-Subject Brain Activity Decoding

The exploration of brain activity and its decoding from fMRI data has been a longstanding pursuit, driven by its potential applications in brain-computer interfaces, medical diagnostics, and virtual reality. Previous approaches have primarily focused on individual subject analysis, highlighting the need for a more universal and adaptable framework, which is the core motivation behind our work. In this work, we propose fMRI-PTE, an innovative auto-encoder approach for fMRI pre-training, with a focus on addressing the challenges of varying fMRI data dimensions due to individual brain differences. Our approach involves transforming fMRI signals into unified 2D representations, ensuring consistency in dimensions and preserving distinct brain activity patterns. We introduce a novel learning strategy tailored for pre-training 2D fMRI images, enhancing the quality of reconstruction. fMRI-PTE's adaptability with image generators enables the generation of well-represented fMRI features, facilitating various downstream tasks, including within-subject and cross-subject brain activity decoding. Our contributions encompass introducing fMRI-PTE, innovative data transformation, efficient training, a novel learning strategy, and the universal applicability of our approach. Extensive experiments validate and support our claims, offering a promising foundation for further research in this domain.

cs.CV↗

arXiv2023

Self-organization of nonlinearly coupled neural fluctuations into synergistic population codes

Neural activity in the brain exhibits correlated fluctuations that may strongly influence the properties of neural population coding. However, how such correlated neural fluctuations may arise from the intrinsic neural circuit dynamics and subsequently affect the computational properties of neural population activity remains poorly understood. The main difficulty lies in resolving the nonlinear coupling between correlated fluctuations with the overall dynamics of the system. In this study, we investigate the emergence of synergistic neural population codes from the intrinsic dynamics of correlated neural fluctuations in a neural circuit model capturing realistic nonlinear noise coupling of spiking neurons. We show that a rich repertoire of spatial correlation patterns naturally emerges in a bump attractor network and further reveals the dynamical regime under which the interplay between differential and noise correlations leads to synergistic codes. Moreover, we find that negative correlations may induce stable bound states between two bumps, a phenomenon previously unobserved in firing rate models. These noise-induced effects of bump attractors lead to a number of computational advantages including enhanced working memory capacity and efficient spatiotemporal multiplexing and can account for a range of cognitive and behavioral phenomena related to working memory. This study offers a dynamical approach to investigating realistic correlated neural fluctuations and insights to their roles in cortical computations.

physics.bio-ph↗

arXiv2023

Digital Twin Brain: a simulation and assimilation platform for whole human brain

In this work, we present a computing platform named digital twin brain (DTB) that can simulate spiking neuronal networks of the whole human brain scale and more importantly, a personalized biological brain structure. In comparison to most brain simulations with a homogeneous global structure, we highlight that the sparseness, couplingness and heterogeneity in the sMRI, DTI and PET data of the brain has an essential impact on the efficiency of brain simulation, which is proved from the scaling experiments that the DTB of human brain simulation is communication-intensive and memory-access intensive computing systems rather than computation-intensive. We utilize a number of optimization techniques to balance and integrate the computation loads and communication traffics from the heterogeneous biological structure to the general GPU-based HPC and achieve leading simulation performance for the whole human brain-scaled spiking neuronal networks. On the other hand, the biological structure, equipped with a mesoscopic data assimilation, enables the DTB to investigate brain cognitive function by a reverse-engineering method, which is demonstrated by a digital experiment of visual evaluation on the DTB. Furthermore, we believe that the developing DTB will be a promising powerful platform for a large of research orients including brain-inspiredintelligence, rain disease medicine and brain-machine interface.

cs.NE↗

arXiv2023

Joint fMRI Decoding and Encoding with Latent Embedding Alignment

The connection between brain activity and corresponding visual stimuli is crucial in comprehending the human brain. While deep generative models have exhibited advancement in recovering brain recordings by generating images conditioned on fMRI signals, accomplishing high-quality generation with consistent semantics continues to pose challenges. Moreover, the prediction of brain activity from visual stimuli remains a formidable undertaking. In this paper, we introduce a unified framework that addresses both fMRI decoding and encoding. Commencing with the establishment of two latent spaces capable of representing and reconstructing fMRI signals and visual images, respectively, we proceed to align the fMRI signals and visual images within the latent space, thereby enabling a bidirectional transformation between the two domains. Our Latent Embedding Alignment (LEA) model concurrently recovers visual stimuli from fMRI signals and predicts brain activity from images within a unified framework. The performance of LEA surpasses that of existing methods on multiple benchmark fMRI decoding and encoding datasets. By integrating fMRI decoding and encoding, LEA offers a comprehensive solution for modeling the intricate relationship between brain activity and visual stimuli.

cs.CV↗

arXiv2023

Rethinking Precision of Pseudo Label: Test-Time Adaptation via Complementary Learning

In this work, we propose a novel complementary learning approach to enhance test-time adaptation (TTA), which has been proven to exhibit good performance on testing data with distribution shifts such as corruptions. In test-time adaptation tasks, information from the source domain is typically unavailable and the model has to be optimized without supervision for test-time samples. Hence, usual methods assign labels for unannotated data with the prediction by a well-trained source model in an unsupervised learning framework. Previous studies have employed unsupervised objectives, such as the entropy of model predictions, as optimization targets to effectively learn features for test-time samples. However, the performance of the model is easily compromised by the quality of pseudo-labels, since inaccuracies in pseudo-labels introduce noise to the model. Therefore, we propose to leverage the "less probable categories" to decrease the risk of incorrect pseudo-labeling. The complementary label is introduced to designate these categories. We highlight that the risk function of complementary labels agrees with their Vanilla loss formula under the conventional true label distribution. Experiments show that the proposed learning algorithm achieves state-of-the-art performance on different datasets and experiment settings.

cs.CV↗

arXiv2022

Accelerating Score-based Generative Models with Preconditioned Diffusion Sampling

Score-based generative models (SGMs) have recently emerged as a promising class of generative models. However, a fundamental limitation is that their inference is very slow due to a need for many (e.g., 2000) iterations of sequential computations. An intuitive acceleration method is to reduce the sampling iterations which however causes severe performance degradation. We investigate this problem by viewing the diffusion sampling process as a Metropolis adjusted Langevin algorithm, which helps reveal the underlying cause to be ill-conditioned curvature. Under this insight, we propose a model-agnostic preconditioned diffusion sampling (PDS) method that leverages matrix preconditioning to alleviate the aforementioned problem. Crucially, PDS is proven theoretically to converge to the original target distribution of a SGM, no need for retraining. Extensive experiments on three image datasets with a variety of resolutions and diversity validate that PDS consistently accelerates off-the-shelf SGMs whilst maintaining the synthesis quality. In particular, PDS can accelerate by up to 29x on more challenging high resolution (1024x1024) image generation.

cs.CV↗

arXiv2022

MouseGAN++: Unsupervised Disentanglement and Contrastive Representation for Multiple MRI Modalities Synthesis and Structural Segmentation of Mouse Brain

Segmenting the fine structure of the mouse brain on magnetic resonance (MR) images is critical for delineating morphological regions, analyzing brain function, and understanding their relationships. Compared to a single MRI modality, multimodal MRI data provide complementary tissue features that can be exploited by deep learning models, resulting in better segmentation results. However, multimodal mouse brain MRI data is often lacking, making automatic segmentation of mouse brain fine structure a very challenging task. To address this issue, it is necessary to fuse multimodal MRI data to produce distinguished contrasts in different brain structures. Hence, we propose a novel disentangled and contrastive GAN-based framework, named MouseGAN++, to synthesize multiple MR modalities from single ones in a structure-preserving manner, thus improving the segmentation performance by imputing missing modalities and multi-modality fusion. Our results demonstrate that the translation performance of our method outperforms the state-of-the-art methods. Using the subsequently learned modality-invariant information as well as the modality-translated images, MouseGAN++ can segment fine brain structures with averaged dice coefficients of 90.0% (T2w) and 87.9% (T1w), respectively, achieving around +10% performance improvement compared to the state-of-the-art algorithms. Our results demonstrate that MouseGAN++, as a simultaneous image synthesis and segmentation method, can be used to fuse cross-modality information in an unpaired manner and yield more robust performance in the absence of multimodal data. We release our method as a mouse brain structural segmentation tool for free academic usage at https://github.com/yu02019.

eess.IV↗

arXiv2022

AGO-Net: Association-Guided 3D Point Cloud Object Detection Network

The human brain can effortlessly recognize and localize objects, whereas current 3D object detection methods based on LiDAR point clouds still report inferior performance for detecting occluded and distant objects: the point cloud appearance varies greatly due to occlusion, and has inherent variance in point densities along the distance to sensors. Therefore, designing feature representations robust to such point clouds is critical. Inspired by human associative recognition, we propose a novel 3D detection framework that associates intact features for objects via domain adaptation. We bridge the gap between the perceptual domain, where features are derived from real scenes with sub-optimal representations, and the conceptual domain, where features are extracted from augmented scenes that consist of non-occlusion objects with rich detailed information. A feasible method is investigated to construct conceptual scenes without external datasets. We further introduce an attention-based re-weighting module that adaptively strengthens the feature adaptation of more informative regions. The network's feature enhancement ability is exploited without introducing extra cost during inference, which is plug-and-play in various 3D detection frameworks. We achieve new state-of-the-art performance on the KITTI 3D detection benchmark in both accuracy and speed. Experiments on nuScenes and Waymo datasets also validate the versatility of our method.

cs.CV↗