arXiv subjects

Jiankun Wang

Publications and source records attributed to Jiankun Wang.

At least 37 records · Page 2Linked to original sources

arXiv2026

SurgAtt-Tracker: Online Surgical Attention Tracking via Temporal Proposal Reranking and Motion-Aware Refinement

Accurate and stable field-of-view (FoV) guidance is critical for safe and efficient minimally invasive surgery, yet existing approaches often conflate visual attention estimation with downstream camera control or rely on direct object-centric assumptions. In this work, we formulate surgical attention tracking as a spatio-temporal learning problem and model surgeon focus as a dense attention heatmap, enabling continuous and interpretable frame-wise FoV guidance. We propose SurgAtt-Tracker, a holistic framework that robustly tracks surgical attention by exploiting temporal coherence through proposal-level reranking and motion-aware refinement, rather than direct regression. To support systematic training and evaluation, we introduce SurgAtt-1.16M, a large-scale benchmark with a clinically grounded annotation protocol that enables comprehensive heatmap-based attention analysis across procedures and institutions. Extensive experiments on multiple surgical datasets demonstrate that SurgAtt-Tracker consistently achieves state-of-the-art performance and strong robustness under occlusion, multi-instrument interference, and cross-domain settings. Beyond attention tracking, our approach provides a frame-wise FoV guidance signal that can directly support downstream robotic FoV planning and automatic camera control.

cs.CV↗

arXiv2025

SONAR: Semantic-Object Navigation with Aggregated Reasoning through a Cross-Modal Inference Paradigm

Understanding human instructions and accomplishing Vision-Language Navigation tasks in unknown environments is essential for robots. However, existing modular approaches heavily rely on the quality of training data and often exhibit poor generalization. Vision-Language Model based methods, while demonstrating strong generalization capabilities, tend to perform unsatisfactorily when semantic cues are weak. To address these issues, this paper proposes SONAR, an aggregated reasoning approach through a cross modal paradigm. The proposed method integrates a semantic map based target prediction module with a Vision-Language Model based value map module, enabling more robust navigation in unknown environments with varying levels of semantic cues, and effectively balancing generalization ability with scene adaptability. In terms of target localization, we propose a strategy that integrates multi-scale semantic maps with confidence maps, aiming to mitigate false detections of target objects. We conducted an evaluation of the SONAR within the Gazebo simulator, leveraging the most challenging Matterport 3D (MP3D) dataset as the experimental benchmark. Experimental results demonstrate that SONAR achieves a success rate of 38.4% and an SPL of 17.7%.

cs.RO↗

arXiv2025

MolParser: End-to-end Visual Recognition of Molecule Structures in the Wild

In recent decades, chemistry publications and patents have increased rapidly. A significant portion of key information is embedded in molecular structure figures, complicating large-scale literature searches and limiting the application of large language models in fields such as biology, chemistry, and pharmaceuticals. The automatic extraction of precise chemical structures is of critical importance. However, the presence of numerous Markush structures in real-world documents, along with variations in molecular image quality, drawing styles, and noise, significantly limits the performance of existing optical chemical structure recognition (OCSR) methods. We present MolParser, a novel end-to-end OCSR method that efficiently and accurately recognizes chemical structures from real-world documents, including difficult Markush structure. We use a extended SMILES encoding rule to annotate our training dataset. Under this rule, we build MolParser-7M, the largest annotated molecular image dataset to our knowledge. While utilizing a large amount of synthetic data, we employed active learning methods to incorporate substantial in-the-wild data, specifically samples cropped from real patents and scientific literature, into the training process. We trained an end-to-end molecular image captioning model, MolParser, using a curriculum learning approach. MolParser significantly outperforms classical and learning-based methods across most scenarios, with potential for broader downstream applications. The dataset is publicly available in huggingface.

cs.CV↗

arXiv2025

Uni-AIMS: AI-Powered Microscopy Image Analysis

This paper presents a systematic solution for the intelligent recognition and automatic analysis of microscopy images. We developed a data engine that generates high-quality annotated datasets through a combination of the collection of diverse microscopy images from experiments, synthetic data generation and a human-in-the-loop annotation process. To address the unique challenges of microscopy images, we propose a segmentation model capable of robustly detecting both small and large objects. The model effectively identifies and separates thousands of closely situated targets, even in cluttered visual environments. Furthermore, our solution supports the precise automatic recognition of image scale bars, an essential feature in quantitative microscopic analysis. Building upon these components, we have constructed a comprehensive intelligent analysis platform and validated its effectiveness and practicality in real-world applications. This study not only advances automatic recognition in microscopy imaging but also ensures scalability and generalizability across multiple application domains, offering a powerful tool for automated microscopic analysis in interdisciplinary research. A online application is made available for researchers to access and evaluate the proposed automated analysis service.

eess.IV↗

arXiv2025

EndoControlMag: Robust Endoscopic Vascular Motion Magnification with Periodic Reference Resetting and Hierarchical Tissue-aware Dual-Mask Control

Visualizing subtle vascular motions in endoscopic surgery is crucial for surgical precision and decision-making, yet remains challenging due to the complex and dynamic nature of surgical scenes. To address this, we introduce EndoControlMag, a training-free, Lagrangian-based framework with mask-conditioned vascular motion magnification tailored to endoscopic environments. Our approach features two key modules: a Periodic Reference Resetting (PRR) scheme that divides videos into short overlapping clips with dynamically updated reference frames to prevent error accumulation while maintaining temporal coherence, and a Hierarchical Tissue-aware Magnification (HTM) framework with dual-mode mask dilation. HTM first tracks vessel cores using a pretrained visual tracking model to maintain accurate localization despite occlusions and view changes. It then applies one of two adaptive softening strategies to surrounding tissues: motion-based softening that modulates magnification strength proportional to observed tissue displacement, or distance-based exponential decay that simulates biomechanical force attenuation. This dual-mode approach accommodates diverse surgical scenarios-motion-based softening excels with complex tissue deformations while distance-based softening provides stability during unreliable optical flow conditions. We evaluate EndoControlMag on our EndoVMM24 dataset spanning four different surgery types and various challenging scenarios, including occlusions, instrument disturbance, view changes, and vessel deformations. Quantitative metrics, visual assessments, and expert surgeon evaluations demonstrate that EndoControlMag significantly outperforms existing methods in both magnification accuracy and visual quality while maintaining robustness across challenging surgical conditions. The code, dataset, and video results are available at https://szupc.github.io/EndoControlMag/.

eess.IV↗

arXiv2025

Asymptotically Optimal Lazy Lifelong Sampling-based Algorithm for Efficient Motion Planning in Dynamic Environments

The paper introduces an asymptotically optimal lifelong sampling-based path planning algorithm that combines the merits of lifelong planning algorithms and lazy search algorithms for rapid replanning in dynamic environments where edge evaluation is expensive. By evaluating only sub-path candidates for the optimal solution, the algorithm saves considerable evaluation time and thereby reduces the overall planning cost. It employs a novel informed rewiring cascade to efficiently repair the search tree when the underlying search graph changes. Theoretical analysis indicates that the proposed algorithm converges to the optimal solution as long as sufficient planning time is given. Planning results on robotic systems with $\mathbb{SE}(3)$ and $\mathbb{R}^7$ state spaces in challenging environments highlight the superior performance of the proposed algorithm over various state-of-the-art sampling-based planners in both static and dynamic motion planning tasks. The experiment of planning for a Turtlebot 4 operating in a dynamic environment with several moving pedestrians further verifies the feasibility and advantages of the proposed algorithm.

cs.RO↗

arXiv2025

Selective Densification for Rapid Motion Planning in High Dimensions with Narrow Passages

Sampling-based algorithms are widely used for motion planning in high-dimensional configuration spaces. However, due to low sampling efficiency, their performance often diminishes in complex configuration spaces with narrow corridors. Existing approaches address this issue using handcrafted or learned heuristics to guide sampling toward useful regions. Unfortunately, these strategies often lack generalizability to various problems or require extensive prior training. In this paper, we propose a simple yet efficient sampling-based planning framework along with its bidirectional version that overcomes these issues by integrating different levels of planning granularity. Our approach probes configuration spaces with uniform random samples at varying resolutions and explores these multi-resolution samples online with a bias towards sparse samples when traveling large free configuration spaces. By seamlessly transitioning between sparse and dense samples, our approach can navigate complex configuration spaces while maintaining planning speed and completeness. The simulation results demonstrate that our approach outperforms several state-of-the-art sampling-based planners in $\mathbb{SE}(2)$, $\mathbb{SE}(3)$, and $\mathbb{R}^{14}$ with challenging terrains. Furthermore, experiments conducted with the Franka Emika Panda robot operating in a constrained workspace provide additional evidence of the superiority of the proposed method.

cs.RO↗

arXiv2025

LSTP-Nav: Lightweight Spatiotemporal Policy for Map-free Multi-agent Navigation with LiDAR

Safe and efficient multi-agent navigation in dynamic environments remains inherently challenging, particularly when real-time decision-making is required on resource-constrained platforms. Ensuring collision-free trajectories while adapting to uncertainties without relying on pre-built maps further complicates real-world deployment. To address these challenges, we propose LSTP-Nav, a lightweight end-to-end policy for multi-agent navigation that enables map-free collision avoidance in complex environments by directly mapping raw LiDAR point clouds to motion commands. At the core of this framework lies LSTP-Net, an efficient network that processes raw LiDAR data using a GRU architecture, enhanced with attention mechanisms to dynamically focus on critical environmental features while minimizing computational overhead. Additionally, a novel HS reward optimizes collision avoidance by incorporating angular velocity, prioritizing obstacles along the predicted heading, and enhancing training stability. To narrow the sim-to-real gap, we develop PhysReplay-Simlab, a physics-realistic multi-agent simulator, employs localized replay to mine near-failure experiences. Relying solely on LiDA, LSTP-Nav achieves efficient zero-shot sim-to-real transfer on a CPU-only robotic platform, enabling robust navigation in dynamic environments while maintaining computation frequencies above 40 Hz. Extensive experiments demonstrate that LSTP-Nav outperforms baselines with a 9.58% higher success rate and a 12.30% lower collision rate, underscoring its practicality and robustness for real-world applications.

cs.RO↗

arXiv2025

VLM-TDP: VLM-guided Trajectory-conditioned Diffusion Policy for Robust Long-Horizon Manipulation

Diffusion policy has demonstrated promising performance in the field of robotic manipulation. However, its effectiveness has been primarily limited in short-horizon tasks, and its performance significantly degrades in the presence of image noise. To address these limitations, we propose a VLM-guided trajectory-conditioned diffusion policy (VLM-TDP) for robust and long-horizon manipulation. Specifically, the proposed method leverages state-of-the-art vision-language models (VLMs) to decompose long-horizon tasks into concise, manageable sub-tasks, while also innovatively generating voxel-based trajectories for each sub-task. The generated trajectories serve as a crucial conditioning factor, effectively steering the diffusion policy and substantially enhancing its performance. The proposed Trajectory-conditioned Diffusion Policy (TDP) is trained on trajectories derived from demonstration data and validated using the trajectories generated by the VLM. Simulation experimental results indicate that our method significantly outperforms classical diffusion policies, achieving an average 44% increase in success rate, over 100% improvement in long-horizon tasks, and a 20% reduction in performance degradation in challenging conditions, such as noisy images or altered environments. These findings are further reinforced by our real-world experiments, where the performance gap becomes even more pronounced in long-horizon tasks. Videos are available on https://youtu.be/g0T6h32OSC8

cs.RO↗

arXiv2025

Socially Aware Robot Crowd Navigation via Online Uncertainty-Driven Risk Adaptation

Navigation in human-robot shared crowded environments remains challenging, as robots are expected to move efficiently while respecting human motion conventions. However, many existing approaches emphasize safety or efficiency while overlooking social awareness. This article proposes Learning-Risk Model Predictive Control (LR-MPC), a data-driven navigation algorithm that balances efficiency, safety, and social awareness. LR-MPC consists of two phases: an offline risk learning phase, where a Probabilistic Ensemble Neural Network (PENN) is trained using risk data from a heuristic MPC-based baseline (HR-MPC), and an online adaptive inference phase, where local waypoints are sampled and globally guided by a Multi-RRT planner. Each candidate waypoint is evaluated for risk by PENN, and predictions are filtered using epistemic and aleatoric uncertainty to ensure robust decision-making. The safest waypoint is selected as the MPC input for real-time navigation. Extensive experiments demonstrate that LR-MPC outperforms baseline methods in success rate and social awareness, enabling robots to navigate complex crowds with high adaptability and low disruption. A website about this work is available at https://sites.google.com/view/lr-mpc.

cs.RO↗

arXiv2025

VIGIL: Vision-Language Guided Multiple Instance Learning Framework for Ulcerative Colitis Histological Healing Prediction

Objective: Ulcerative colitis (UC), characterized by chronic inflammation with alternating remission-relapse cycles, requires precise histological healing (HH) evaluation to improve clinical outcomes. To overcome the limitations of annotation-intensive deep learning methods and suboptimal multi-instance learning (MIL) in HH prediction, we propose VIGIL, the first vision-language guided MIL framework integrating white light endoscopy (WLE) and endocytoscopy (EC). Methods:VIGIL begins with a dual-branch MIL module KS-MIL based on top-K typical frames selection and similarity metric adaptive learning to learn relationships among frame features effectively. By integrating the diagnostic report text and specially designed multi-level alignment and supervision between image-text pairs, VIGIL establishes joint image-text guidance during training to capture richer disease-related semantic information. Furthermore, VIGIL employs a multi-modal masked relation fusion (MMRF) strategy to uncover the latent diagnostic correlations of two endoscopic image representations. Results:Comprehensive experiments on a real-world clinical dataset demonstrate VIGIL's superior performance, achieving 92.69\% accuracy and 94.79\% AUC, outperforming existing state-of-the-art methods. Conclusion: The proposed VIGIL framework successfully establishes an effective vision-language guided MIL paradigm for UC HH prediction, reducing annotation burdens while improving prediction reliability. Significance: The research outcomes provide new insights for non-invasive UC diagnosis and hold theoretical significance and clinical value for advancing intelligent healthcare development.

q-bio.QM↗

arXiv2025

PierGuard: A Planning Framework for Underwater Robotic Inspection of Coastal Piers

Using underwater robots instead of humans for the inspection of coastal piers can enhance efficiency while reducing risks. A key challenge in performing these tasks lies in achieving efficient and rapid path planning within complex environments. Sampling-based path planning methods, such as Rapidly-exploring Random Tree* (RRT*), have demonstrated notable performance in high-dimensional spaces. In recent years, researchers have begun designing various geometry-inspired heuristics and neural network-driven heuristics to further enhance the effectiveness of RRT*. However, the performance of these general path planning methods still requires improvement when applied to highly cluttered underwater environments. In this paper, we propose PierGuard, which combines the strengths of bidirectional search and neural network-driven heuristic regions. We design a specialized neural network to generate high-quality heuristic regions in cluttered maps, thereby improving the performance of the path planning. Through extensive simulation and real-world ocean field experiments, we demonstrate the effectiveness and efficiency of our proposed method compared with previous research. Our method achieves approximately 2.6 times the performance of the state-of-the-art geometric-based sampling method and nearly 4.9 times that of the state-of-the-art learning-based sampling method. Our results provide valuable insights for the automation of pier inspection and the enhancement of maritime safety. The updated experimental video is available in the supplementary materials.

cs.RO↗

arXiv2025

Dual Attention Driven Lumbar Magnetic Resonance Image Feature Enhancement and Automatic Diagnosis of Herniation

Lumbar disc herniation (LDH) is a common musculoskeletal disease that requires magnetic resonance imaging (MRI) for effective clinical management. However, the interpretation of MRI images heavily relies on the expertise of radiologists, leading to delayed diagnosis and high costs for training physicians. Therefore, this paper proposes an innovative automated LDH classification framework. To address these key issues, the framework utilizes T1-weighted and T2-weighted MRI images from 205 people. The framework extracts clinically actionable LDH features and generates standardized diagnostic outputs by leveraging data augmentation and channel and spatial attention mechanisms. These outputs can help physicians make confident and time-effective care decisions when needed. The proposed framework achieves an area under the receiver operating characteristic curve (AUC-ROC) of 0.969 and an accuracy of 0.9486 for LDH detection. The experimental results demonstrate the performance of the proposed framework. Our framework only requires a small number of datasets for training to demonstrate high diagnostic accuracy. This is expected to be a solution to enhance the LDH detection capabilities of primary hospitals.

eess.IV↗

arXiv2025

Endo-TTAP: Robust Endoscopic Tissue Tracking via Multi-Facet Guided Attention and Hybrid Flow-point Supervision

Accurate tissue point tracking in endoscopic videos is critical for robotic-assisted surgical navigation and scene understanding, but remains challenging due to complex deformations, instrument occlusion, and the scarcity of dense trajectory annotations. Existing methods struggle with long-term tracking under these conditions due to limited feature utilization and annotation dependence. We present Endo-TTAP, a novel framework addressing these challenges through: (1) A Multi-Facet Guided Attention (MFGA) module that synergizes multi-scale flow dynamics, DINOv2 semantic embeddings, and explicit motion patterns to jointly predict point positions with uncertainty and occlusion awareness; (2) A two-stage curriculum learning strategy employing an Auxiliary Curriculum Adapter (ACA) for progressive initialization and hybrid supervision. Stage I utilizes synthetic data with optical flow ground truth for uncertainty-occlusion regularization, while Stage II combines unsupervised flow consistency and semi-supervised learning with refined pseudo-labels from off-the-shelf trackers. Extensive validation on two MICCAI Challenge datasets and our collected dataset demonstrates that Endo-TTAP achieves state-of-the-art performance in tissue point tracking, particularly in scenarios characterized by complex endoscopic conditions. The source code and dataset will be available at https://anonymous.4open.science/r/Endo-TTAP-36E5.

cs.CV↗

arXiv2025

A Predictive Cooperative Collision Avoidance for Multi-Robot Systems Using Control Barrier Function

Control barrier function (CBF)-based methods provide the minimum modification necessary to formally guarantee safety in the context of quadratic programming, and strict safety guarantee for safety critical systems. However, most CBF-related derivatives myopically focus on present safety at each time step, a reasoning over a look-ahead horizon is exactly missing. In this paper, a predictive safety matrix is constructed. We then consolidate the safety condition based on the smallest eigenvalue of the proposed safety matrix. A predefined deconfliction strategy of motion paths is embedded into the trajectory tracking module to manage deadlock conflicts, which computes the deadlock escape velocity with the minimum attitude angle. Comparison results show that the introduction of the predictive term is robust for measurement uncertainty and is immune to oscillations. The proposed deadlock avoidance method avoids a large detour, without obvious stagnation.

eess.SY↗

arXiv2025

Intelligent System for Automated Molecular Patent Infringement Assessment

Automated drug discovery offers significant potential for accelerating the development of novel therapeutics by substituting labor-intensive human workflows with machine-driven processes. However, molecules generated by artificial intelligence may unintentionally infringe on existing patents, posing legal and financial risks that impede the full automation of drug discovery pipelines. This paper introduces PatentFinder, a novel multi-agent and tool-enhanced intelligence system that can accurately and comprehensively evaluate small molecules for patent infringement. PatentFinder features five specialized agents that collaboratively analyze patent claims and molecular structures with heuristic and model-based tools, generating interpretable infringement reports. To support systematic evaluation, we curate MolPatent-240, a benchmark dataset tailored for patent infringement assessment algorithms. On this benchmark, PatentFinder outperforms baseline methods that rely solely on large language models or specialized chemical tools, achieving a 13.8% improvement in F1-score and a 12% increase in accuracy. Additionally, PatentFinder autonomously generates detailed and interpretable patent infringement reports, showcasing enhanced accuracy and improved interpretability. The high accuracy and interpretability of PatentFinder make it a valuable and reliable tool for automating patent infringement assessments, offering a practical solution for integrating patent protection analysis into the drug discovery pipeline.

cs.LG↗

arXiv2025

Collision Risk Quantification and Conflict Resolution in Trajectory Tracking for Acceleration-Actuated Multi-Robot Systems

One of the pivotal challenges in a multi-robot system is how to give attention to accuracy and efficiency while ensuring safety. Prior arts cannot strictly guarantee collision-free for an arbitrarily large number of robots or the results are considerably conservative. Smoothness of the avoidance trajectory also needs to be further optimized. This paper proposes an accelerationactuated simultaneous obstacle avoidance and trajectory tracking method for arbitrarily large teams of robots, that provides a nonconservative collision avoidance strategy and gives approaches for deadlock avoidance. We propose two ways of deadlock resolution, one involves incorporating an auxiliary velocity vector into the error function of the trajectory tracking module, which is proven to have no influence on global convergence of the tracking error. Furthermore, unlike the traditional methods that they address conflicts after a deadlock occurs, our decision-making mechanism avoids the near-zero velocity, which is much more safer and efficient in crowed environments. Extensive comparison show that the proposed method is superior to the existing studies when deployed in a large-scale robot system, with minimal invasiveness.

cs.RO↗

arXiv2024

Pan-infection Foundation Framework Enables Multiple Pathogen Prediction

Host-response-based diagnostics can improve the accuracy of diagnosing bacterial and viral infections, thereby reducing inappropriate antibiotic prescriptions. However, the existing cohorts with limited sample size and coarse infections types are unable to support the exploration of an accurate and generalizable diagnostic model. Here, we curate the largest infection host-response transcriptome data, including 11,247 samples across 89 blood transcriptome datasets from 13 countries and 21 platforms. We build a diagnostic model for pathogen prediction starting from a pan-infection model as foundation (AUC = 0.97) based on the pan-infection dataset. Then, we utilize knowledge distillation to efficiently transfer the insights from this "teacher" model to four lightweight pathogen "student" models, i.e., staphylococcal infection (AUC = 0.99), streptococcal infection (AUC = 0.94), HIV infection (AUC = 0.93), and RSV infection (AUC = 0.94), as well as a sepsis "student" model (AUC = 0.99). The proposed knowledge distillation framework not only facilitates the diagnosis of pathogens using pan-infection data, but also enables an across-disease study from pan-infection to sepsis. Moreover, the framework enables high-degree lightweight design of diagnostic models, which is expected to be adaptively deployed in clinical settings.

cs.LG↗