arXiv subjects

Jiaqi Wei

Publications and source records attributed to Jiaqi Wei.

At least 19 recordsLinked to original sources

arXiv2026

Build or Adopt? Custom-Built vs. General-Purpose LLM Agent Harnesses for Automotive GUI Testing

As general-purpose LLM agent harnesses mature, organizations must decide whether to continue developing in-house systems or adopt existing alternatives. We study this decision at Volvo Group for GUI testing of Android-based in-vehicle infotainment (IVI) systems. We compare a production, custom-built harness with two general-purpose harnesses, Claude Code and OpenCode, keeping the tools, accessed through the Model Context Protocol (MCP), and the models the same. We evaluate the harnesses with up to four models on Volvo's IVI test cases and on open-ended tasks in public apps (Google Maps, Booking.com), and interview ten practitioners: developers, the product owner, and testers. On Volvo's stepwise IVI tests, general-purpose harnesses match the custom-built harness in success but vary more across runs. Their inference cost per task is 2.6-10.7 times higher, yet the engineering effort they save outweighs this: for a nightly IVI regression suite, total monthly cost, including engineering effort and inference, is 3-66% lower. On open-ended public-app tasks, they succeed more often, mainly because they recover better from incorrect actions. Interviews suggest that external advances can turn an in-house harness into technical debt even without deterioration. Adopting a general-purpose harness shifts maintenance from the agent loop to tools and instructions, but gives teams less control over what the model receives. Regardless of the harness, testers want to inspect the agent's actions and ensure that it follows the prescribed test scenario.

cs.SE↗

arXiv2026

Beyond Retrieval Failure: Understanding Why LLMs Miss Evidence in Multi-Hop RAG

Multi-hop retrieval-augmented generation (RAG) requires an agent to retrieve evidence for a sequence of dependent sub-questions. When a wrong answer lacks a required passage, the passage may be inaccessible to the retriever, or the agent may have failed to issue a query that would retrieve it. Standard retrieval evaluations conflate these two causes. We study how much apparent retrieval failure is instead caused by search drift: the search no longer tracks an unanswered sub-question. Holding the retriever, corpus, and generation model fixed, we introduce ExecutionRAG, a training-free requirement register that records open sub-questions and their supporting evidence. The register changes search guidance but not evidence access, so each gold passage it recovers certifies that the passage was reachable by the original retriever. On 1,000 MuSiQue questions, the number of wrong answers with unretrieved required evidence falls from 382 to 234 with all-MiniLM-L6-v2 and from 383 to 274 with Qwen3-Embedding-0.6B. These counts correspond to 69% to 44% and 66% to 48% of each system's wrong answers, respectively. Crucially, evidence recovery does not produce a proportional reduction in total error: premature resolutions and abstentions increase as missing-evidence failures decrease. The central finding is therefore a shift in the remaining bottleneck, from guiding search toward required evidence to verifying that the retrieved evidence is sufficient.

cs.CL↗

arXiv2026

OmniMoE-VL: A Sparse Vision-Language Model with Coupled Visual-Depth Routing

Vision-language models (VLMs) increasingly use sparse mixture-of-experts (MoE) to scale language-side computation, yet visual information is typically routed only after passing through a fixed cross-modal interface. This leaves an important decision unresolved: which intermediate visual representations should be exposed to language computation for a given question? We introduce OmniMoE-VL, a sparse VLM with a coupled visual-depth routed projector. For each image-prompt pair, the projector selects a sparse set of intermediate visual depths and reuses the resulting global preference to guide both local patch fusion and dynamic visual injection into the language model. This design enables question-dependent visual access while preserving the native visual-token sequence, and complements token-level expert routing in the vision and language stacks. Across eight image-based benchmarks, OmniMoE-VL achieves an average score of 85.9 with 28B total and 9B activated parameters. Controlled comparisons show that the routed visual interface provides the dominant architectural gain, while matched route and component controls, same-image route analysis, and route interventions further support the value of coupling and question-conditioned visual access.

cs.CV↗

arXiv2026

CT-OPD: Counterfactual Trace On-Policy Distillation for Diffusion Vision-Language Models

Diffusion vision-language models generate answers by gradually resolving masked tokens, making accurate conditional prediction in partially resolved states central to post-training. Masking completed answers yields coherent contexts and targets, but prescribed masks do not reflect the model's reveal decisions. Its trajectories capture these decisions, yet their provisional visible tokens can conflict with the target response. Outcome-based reinforcement learning follows these trajectories but provides only response-level feedback, which loses contrast when sampled rewards tie. To align coherent token-level supervision with the model's reveal decisions, we introduce Counterfactual Trace On-Policy Distillation (CT-OPD), which combines completed teacher responses with trajectory masks from the current student. CT-OPD retokenizes each teacher response in the student's vocabulary and extracts unresolved-position masks at successive stages of the student's reverse process. For each mask, it discards provisional rollout values and reconstructs the partial state from the teacher endpoint, so the supervised positions follow the current trajectory while the visible context and targets remain consistent with the same response. The student is trained on these reconstructed states with its native categorical loss, and trajectories are refreshed as the model evolves. Across dense and sparse diffusion architectures, CT-OPD consistently enhances multimodal understanding and reasoning capabilities, with gains of up to 9.80 points on the nine-benchmark average. On the unified understanding-and-generation architecture, it also improves both visual understanding and image generation, showing that the same principle transfers across architectures and modalities. Ablations further attribute these gains to coherent reconstruction and current-model trajectory masks.

cs.CV↗

arXiv2026

Agent Memory with Episodic Retrieval for Financial Decision-Making

Large language models (LLMs) have demonstrated strong capabilities in financial analysis and reasoning, inspiring recent advances in agent-based trading frameworks. While these systems show promise, prior approaches either emphasize long-horizon forecasting or operate as stateless analyzers, limiting their applicability to the demands of trading in complicated settings. To address these gaps, we introduce META (Memory Enhanced Trading Agent), the first RAG-like episodic-memory-augmented multi-agent framework for financial decision making. META integrates a family of specialized indicator agents (e.g., Trend, MACD, Stochastic, RSI, SMA, AVWAP, Heikin-Ashi) with a Decision Agent that fuses their reports, and a Memory module that retrieves and updates past trading episodes encoded as market state embeddings with outcomes and reflections. By recalling relevant experiences and adaptively reweighting signals under similar market regimes, META achieves improved directional accuracy and robustness under short-horizon evaluation. Our results demonstrate that episodic memory provides a powerful mechanism for regime-aware, interpretable, and low-latency decision-making in trading and decision making. The code of this project is released on GitHub.

cs.AI↗

arXiv2026

When LLM Meets Tree Search: A Systematic View of Inference as Search in Large Language Models

As pretraining scaling laws approach saturation, Test-Time Scaling (TTS) has emerged as an important direction for improving reasoning by allocating inference-time compute to a fixed model prior. Viewed at a high level, TTS reframes inference as search over a space of partial reasoning states. While Chain-of-Thought (CoT) exposes intermediate steps, common instantiations rely on single-trajectory decoding, limiting recovery from early errors and exploration. This survey systematizes recent progress in tree-search-based reasoning, viewing inference as instance-specific optimization rather than decoding. We trace the evolution from uninformed search to Monte Carlo Tree Search (MCTS), highlighting how sampling-based control supports principled exploration-exploitation trade-offs. To unify a fragmented literature, we introduce a Unified Design Space spanning search topology, evaluation signals, and control dynamics, and advocate a standardized compute-reporting abstraction to make compute-accuracy trade-offs explicit and comparable.

cs.CL↗

arXiv2026

Morphology-Guided Deterministic Fabrication of Low-Noise High-Temperature Superconducting Quantum Interference Devices

Reproducible bicrystal high-temperature superconducting quantum interference devices remain limited by local variability along the grain boundaries that form the Josephson junctions. Here, we develop a site-selective fabrication workflow in which atomic force microscopy maps the intended junction region before lithography, quantifies an apparent grain-boundary width, rejects pore-rich segments, and writes a nearby registration mark for site-specific pattern alignment. The apparent grain-boundary width provides a practical morphology metric, with narrower regions consistently yielding larger critical currents and characteristic voltages. Iterative optimization within this workflow further improves junction and device performance, reaching a liquid-nitrogen-temperature field-noise level of 40 fT Hz^(-1/2). This strategy turns local grain-boundary heterogeneity from an uncontrolled source of variability into a basis for site-selective fabrication, providing a route towards scalable manufacturing of low-noise HTS SQUIDs with high uniformity.

cond-mat.mes-hall↗

arXiv2026

Messages, Not Tokens: Grounded Coresets for Faithful VLM Compression

Modern vision language models (VLMs) turn high-resolution images into long sequences of visual tokens. Every token traverses the language decoder and persists in its prompt KV cache, inflating inference cost and motivating aggressive visual compression. Existing score-based methods assign each token an independent importance score and retain the Top-K. However, text queries consume collective, signed attention messages from the visual population, not isolated patches. Consequently, equally sized Top-K sets can repeatedly cover one salient region, omit sparse but complementary evidence and discard information carried by the removed population. We therefore formulate faithful visual compression as constructing a compact coreset for decoder messages, and introduce our training-free Grounded Message Coreset Pruning (GMC) which jointly allocates support across query-grounded, appearance, and coordinate-aware evidence, then transports discarded states into selected representatives at their original multimodal positions before physical compaction and native attention resume. This decomposes faithful compression into two coupled components, including selecting carriers that cover the required message modes and realizing the signed population message on those carriers. We further derive bounds connecting their errors to signed-message distortion, visual innovation, and candidate-margin stability. Experiments across multiple VLM families and diverse benchmarks demonstrate strong performance, with GMC-H2 retaining 97.78% Full-relative mean capability on Qwen2.5-VL-7B using 80.2% fewer visual tokens, while GMC-L16 reaches 100.36%. Controlled interventions verify that collective support and population realization jointly drive these gains.

cs.CV↗

arXiv2026

EvoMAS: Learning Execution-Time Workflows for Multi-Agent Systems

Large language model (LLM)-based multi-agent systems have shown strong potential on complex tasks through agent specialization, tool use, and collaborative reasoning. However, most automated multi-agent system design methods still follow a one-shot paradigm: a workflow is optimized or selected before execution and then reused unchanged throughout the task. This static coordination strategy is ill-suited for long-horizon tasks whose subgoals, intermediate evidence, and information needs evolve over multiple execution stages. We propose EvoMAS, a framework for execution-time multi-agent workflow construction. EvoMAS formulates workflow construction as a meta-level sequential decision problem along a single task trajectory. At each stage, it constructs an explicit task state through a Planner-Evaluator-Updater pipeline and uses a learned Workflow Adapter to instantiate a stage-specific layered workflow from a fixed pool of candidate agents. The adapter is trained with policy gradients using sparse, verifiable terminal task success as the main supervision signal, while evaluator-based process reward is analyzed separately under very-hard sparse-reward settings. Experiments on GAIA, HLE, and DeepResearcher show that EvoMAS outperforms single-agent baselines and recent automated multi-agent workflow design methods. Our analyses further show that explicit task-state construction and learned workflow adaptation provide complementary benefits. Additional results indicate that process reward is most useful when terminal success is extremely sparse, and qualitative case studies illustrate that EvoMAS adapts agent coordination as the task state evolves.

cs.AI↗

arXiv2026

When to Think, When to Speak: Learning Disclosure Policies for LLM Reasoning

In single-stream autoregressive interfaces, the same tokens both update the model state and constitute an irreversible public commitment. This coupling creates a silence tax: additional deliberation postpones the first task-relevant content, while naive early streaming risks premature commitments that bias subsequent generations. We introduce Side-by-Side (SxS) Interleaved Reasoning, which makes disclosure timing a controllable decision within standard autoregressive generation. SxS interleaves partial disclosures with continued private reasoning in the same context, but releases content only when it is supported by the reasoning so far. To learn such pacing without incentivizing filler, we construct entailment-aligned interleaved trajectories by matching answer prefixes to supporting reasoning prefixes, then train with SFT to acquire the dual-action semantics and RL to recover reasoning performance under the new format. Across two Qwen3 architectures/scales (MoE Qwen3-30B-A3B, dense Qwen3-4B) and both in-domain (AIME25) and out-of-domain (GPQA-Diamond) benchmarks, SxS improves accuracy--content-latency Pareto trade-offs under token-level proxies such as inter-update waiting.

cs.CL↗

arXiv2026

AblateCell: A Reproduce-then-Ablate Agent for Virtual Cell Repositories

Systematic ablations are essential to attribute performance gains in AI Virtual Cells, yet they are rarely performed because biological repositories are under-standardized and tightly coupled to domain-specific data and formats. While recent coding agents can translate ideas into implementations, they typically stop at producing code and lack a verifier that can reproduce strong baselines and rigorously test which components truly matter. We introduce AblateCell, a reproduce-then-ablate agent for virtual cell repositories that closes this verification gap. AblateCell first reproduces reported baselines end-to-end by auto-configuring environments, resolving dependency and data issues, and rerunning official evaluations while emitting verifiable artifacts. It then conducts closed-loop ablation by generating a graph of isolated repository mutations and adaptively selecting experiments under a reward that trades off performance impact and execution cost. Evaluated on three single-cell perturbation prediction repositories (CPA, GEARS, BioLORD), AblateCell achieves 88.9% (+29.9% to human expert) end-to-end workflow success and 93.3% (+53.3% to heuristic) accuracy in recovering ground-truth critical components. These results enable scalable, repository-grounded verification and attribution directly on biological codebases.

cs.AI↗

arXiv2026

PosterGen: Aesthetic-Aware Multi-Modal Paper-to-Poster Generation via Multi-Agent LLMs

Multi-agent systems built upon large language models (LLMs) have demonstrated remarkable capabilities in tackling complex compositional tasks. In this work, we apply this paradigm to the paper-to-poster generation problem, a practical yet time-consuming process faced by researchers preparing for conferences. While recent approaches have attempted to automate this task, most neglect core design and aesthetic principles, resulting in posters that require substantial manual refinement. To address these design limitations, we propose PosterGen, a multi-agent framework that mirrors the workflow of professional poster designers. It consists of four collaborative specialized agents: (1) Parser and Curator agents extract content from the paper and organize storyboard; (2) Layout agent maps the content into a coherent spatial layout; (3) Stylist agents apply visual design elements such as color and typography; and (4) Renderer composes the final poster. Together, these agents produce posters that are both semantically grounded and visually appealing. To evaluate design quality, we introduce a vision-language model (VLM)-based rubric that measures layout balance, readability, and aesthetic coherence. Experimental results show that PosterGen consistently matches in content fidelity, and significantly outperforms existing methods in visual designs, generating posters that are presentation-ready with minimal human refinements.

cs.AI↗

arXiv2026

HarmonyCell: Automating Single-Cell Perturbation Modeling under Semantic and Distribution Shifts

Single-cell perturbation studies face dual heterogeneity bottlenecks: (i) semantic heterogeneity--identical biological concepts encoded under incompatible metadata schemas across datasets; and (ii) statistical heterogeneity--distribution shifts from biological variation demanding dataset-specific inductive biases. We propose HarmonyCell, an end-to-end agent framework resolving each challenge through a dedicated mechanism: an LLM-driven Semantic Unifier autonomously maps disparate metadata into a canonical interface without manual intervention; and an adaptive Monte Carlo Tree Search engine operates over a hierarchical action space to synthesize architectures with optimal statistical inductive biases for distribution shifts. Evaluated across diverse perturbation tasks under both semantic and distribution shifts, HarmonyCell achieves a 95% valid execution rate on heterogeneous input datasets (versus 0% for general agents) while matching or even exceeding expert-designed baselines in rigorous out-of-distribution evaluations. This dual-track orchestration enables scalable automatic virtual cell modeling without dataset-specific engineering.

cs.AI↗

arXiv2026

Joint Optimization of Model Partitioning and Resource Allocation for Anti-Jamming Collaborative Inference Systems

With the increasing computational demands of deep neural network (DNN) inference on resource-constrained devices, DNN partitioning-based device-edge collaborative inference has emerged as a promising paradigm. However, the transmission of intermediate feature data is vulnerable to malicious jamming, which significantly degrades the overall inference performance. To counter this threat, this letter focuses on an anti-jamming collaborative inference system in the presence of a malicious jammer. In this system, a DNN model is partitioned into two distinct segments, which are executed by wireless devices and edge servers, respectively. We first analyze the effects of jamming and DNN partitioning on inference accuracy via data regression. Based on this, our objective is to maximize the system's revenue of delay and accuracy (RDA) under inference accuracy and computing resource constraints by jointly optimizing computation resource allocation, devices' transmit power, and DNN partitioning. To address the mixed-integer nonlinear programming problem, we propose an efficient alternating optimization-based algorithm, which decomposes the problem into three subproblems that are solved via Karush-Kuhn-Tucker conditions, convex optimization methods, and a quantum genetic algorithm, respectively. Extensive simulations demonstrate that our proposed scheme outperforms baselines in terms of RDA.

cs.LG↗

arXiv2026

FORESTLLM: Large Language Models Make Random Forest Great on Few-shot Tabular Learning

Tabular data high-stakes critical decision-making in domains such as finance, healthcare, and scientific discovery. Yet, learning effectively from tabular data in few-shot settings, where labeled examples are scarce, remains a fundamental challenge. Traditional tree-based methods often falter in these regimes due to their reliance on statistical purity metrics, which become unstable and prone to overfitting with limited supervision. At the same time, direct applications of large language models (LLMs) often overlook its inherent structure, leading to suboptimal performance. To overcome these limitations, we propose FORESTLLM, a novel framework that unifies the structural inductive biases of decision forests with the semantic reasoning capabilities of LLMs. Crucially, FORESTLLM leverages the LLM only during training, treating it as an offline model designer that encodes rich, contextual knowledge into a lightweight, interpretable forest model, eliminating the need for LLM inference at test time. Our method is two-fold. First, we introduce a semantic splitting criterion in which the LLM evaluates candidate partitions based on their coherence over both labeled and unlabeled data, enabling the induction of more robust and generalizable tree structures under few-shot supervision. Second, we propose a one-time in-context inference mechanism for leaf node stabilization, where the LLM distills the decision path and its supporting examples into a concise, deterministic prediction, replacing noisy empirical estimates with semantically informed outputs. Across a diverse suite of few-shot classification and regression benchmarks, FORESTLLM achieves state-of-the-art performance.

cs.LG↗

arXiv2025

Reflection Pretraining Enables Token-Level Self-Correction in Biological Sequence Models

Chain-of-Thought (CoT) prompting has significantly advanced task-solving capabilities in natural language processing with large language models. Unlike standard prompting, CoT encourages the model to generate intermediate reasoning steps, non-answer tokens, that help guide the model toward more accurate final outputs. These intermediate steps enable more complex reasoning processes such as error correction, memory management, future planning, and self-reflection. However, applying CoT to non-natural language domains, such as protein and RNA language models, is not yet possible, primarily due to the limited expressiveness of their token spaces (e.g., amino acid tokens). In this work, we propose and define the concept of language expressiveness: the ability of a given language, using its tokens and grammar, to encode information. We show that the limited expressiveness of protein language severely restricts the applicability of CoT-style reasoning. To overcome this, we introduce reflection pretraining, for the first time in a biological sequence model, which enables the model to engage in intermediate reasoning through the generation of auxiliary "thinking tokens" beyond simple answer tokens. Theoretically, we demonstrate that our augmented token set significantly enhances biological language expressiveness, thereby improving the overall reasoning capacity of the model. Experimentally, our pretraining approach teaches protein models to self-correct and leads to substantial performance gains compared to standard pretraining.

cs.CL↗

arXiv2025

Probing Scientific General Intelligence of LLMs with Scientist-Aligned Workflows

Despite advances in scientific AI, a coherent framework for Scientific General Intelligence (SGI)-the ability to autonomously conceive, investigate, and reason across scientific domains-remains lacking. We present an operational SGI definition grounded in the Practical Inquiry Model (PIM: Deliberation, Conception, Action, Perception) and operationalize it via four scientist-aligned tasks: deep research, idea generation, dry/wet experiments, and experimental reasoning. SGI-Bench comprises over 1,000 expert-curated, cross-disciplinary samples inspired by Science's 125 Big Questions, enabling systematic evaluation of state-of-the-art LLMs. Results reveal gaps: low exact match (10--20%) in deep research despite step-level alignment; ideas lacking feasibility and detail; high code executability but low execution result accuracy in dry experiments; low sequence fidelity in wet protocols; and persistent multimodal comparative-reasoning challenges. We further introduce Test-Time Reinforcement Learning (TTRL), which optimizes retrieval-augmented novelty rewards at inference, enhancing hypothesis novelty without reference answer. Together, our PIM-grounded definition, workflow-centric benchmark, and empirical insights establish a foundation for AI systems that genuinely participate in scientific discovery.

cs.AI↗

arXiv2025

Accurate de novo sequencing of the modified proteome with OmniNovo

Post-translational modifications (PTMs) serve as a dynamic chemical language regulating protein function, yet current proteomic methods remain blind to a vast portion of the modified proteome. Standard database search algorithms suffer from a combinatorial explosion of search spaces, limiting the identification of uncharacterized or complex modifications. Here we introduce OmniNovo, a unified deep learning framework for reference-free sequencing of unmodified and modified peptides directly from tandem mass spectra. Unlike existing tools restricted to specific modification types, OmniNovo learns universal fragmentation rules to decipher diverse PTMs within a single coherent model. By integrating a mass-constrained decoding algorithm with rigorous false discovery rate estimation, OmniNovo achieves state-of-the-art accuracy, identifying 51\% more peptides than standard approaches at a 1\% false discovery rate. Crucially, the model generalizes to biological sites unseen during training, illuminating the dark matter of the proteome and enabling unbiased comprehensive analysis of cellular regulation.

q-bio.QM↗