arXiv subjects

Jin Xiao

Publications and source records attributed to Jin Xiao.

At least 19 recordsLinked to original sources

arXiv2026

CHOW-SLAM: Compact Hybrid Representation with Complementary Overlap Window Optimization for RGB-D SLAM

Simultaneous localization and mapping (SLAM) based on Neural Radiance Fields (NeRF) enables dense, continuous scene reconstruction. However, existing systems operating with limited online resources struggle to simultaneously construct two types of constraints, namely, compact yet discriminative spatial constraints derived from scene representations and persistent temporal constraints derived from historical observations. To address this challenge, we propose CHOW-SLAM, a dense RGB-D SLAM framework that explicitly constructs these complementary spatial and temporal constraints. Spatially, we propose a compact parametric-hash (P-H) hybrid representation that organizes components based on planes and grids across scales in P and H branches. A unified multi-output decoder further aligns the ray termination distributions induced by TSDF and density, preserving geometry and appearance under a compact parameter budget. Temporally, we propose a complementary overlap-window strategy to prevent optimization from being dominated by short-term overlap or weakly related historical observations. Within a fixed budget, the strategy retains recent frames, selects high-overlap local frames, and introduces temporally distributed historical keyframes. Loss-aware keyframe insertion and bundle adjustment scheduling further adapt optimization to tracking quality. In addition, ORB-based tracking and geometric pose estimation are used for pose initialization, followed by neural rendering optimization to improve tracking stability. Extensive evaluations on multiple datasets demonstrate that CHOW-SLAM outperforms state-of-the-art methods in both scene reconstruction quality and camera tracking accuracy. The source code is available at https://github.com/jinjidexiaohuoban/CHOW-SLAM.

cs.CV↗

arXiv2026

Channel-Level Relation to Attentive Aggregation with Neighborhood-Homogeneity Constraint for Point Cloud Analysis

In 3D point cloud understanding, the core challenge lies in accurately capturing discriminative features within complex neighborhoods, which directly affects the execution precision of downstream tasks such as embodied AI and autonomous driving. Existing methods explore feature correlation discrimination but are limited to point-level spatial distribution or channel responses, enabling only coarse-grained level evaluation. For modern multi-scale point cloud networks, such coarse-grained metrics inevitably incur significant information loss in deeper layers. To address this, we propose PointCRA, a novel network with a channel-level metric-based enhancement mechanism. Our core idea is to introduce temporal trend variation as a new evaluation dimension to avoid the information loss caused by weight dimension collapse in existing spatial and channel attention mechanisms. On this basis, we construct a multi-level calibration framework guided by neighborhood homogeneity for weight calibration, and design a dedicated loss function to enhance channel discriminability.PointCRA leverages intrinsic feature priors to adaptively correct feature aggregation, offering interpretability with low parameter overhead. Our method is transferable, interpretable, and efficient. We validate the proposed method on diverse datasets and benchmark models, and further demonstrate its rationality through extensive analytical experiments. Our PointCRA achieves 77.5\% mIoU on the S3DIS dataset, 90.4\% OA on the ScanObjectNN dataset, and 87.4\% instance mIoU on the ShapeNetPart dataset. The code and pretrained weights are publicly available on GitHub: https://github.com/AGENT9717/PointCRA

cs.CV↗

arXiv2026

ChemAmp: Amplified Chemistry Tools via Composable Agents

Although LLM-based agents are proven to master tool orchestration in scientific fields, particularly chemistry, their single-task performance remains limited by underlying tool constraints. To this end, we propose tool amplification, a novel paradigm that enhances the collective capabilities of specialized tools through optimized, dynamic coordination within individual tasks. Instantiating this paradigm, we introduce ChemAmp, a computationally lightweight framework that dynamically treats chemistry tools (e.g., UniMol2, Chemformer) as composable building-block agents. It constructs task-specialized super-agents that transcend atomic tool constraints with limited data ($\leq$10 samples). Our evaluations across four core chemistry tasks molecular design, molecule captioning, reaction prediction, and property prediction demonstrate that ChemAmp outperforms chemistry-specialized models, generalist LLMs, and agent systems with tool orchestration. Critically, this bottom-up construction strategy enables 94\% inference token cost reductions versus vanilla multi-agent systems.

cs.LG↗

arXiv2026

What Makes an Ideal Quote? Recommending "Unexpected yet Rational" Quotations via Novelty

Quotation recommendation aims to enrich writing by suggesting quotes that complement a given context, yet existing systems mostly optimize surface-level topical relevance and ignore the deeper semantic and aesthetic properties that make quotations memorable. We start from two empirical observations. First, a systematic user study shows that people consistently prefer quotations that are ``unexpected yet rational'' in context, identifying novelty as a key desideratum. Second, we find that strong existing models struggle to fully understand the deep meanings of quotations. Inspired by defamiliarization theory, we therefore formalize quote recommendation as choosing contextually novel but semantically coherent quotations. We operationalize this objective with NovelQR, a novelty-driven quotation recommendation framework. A generative label agent first interprets each quotation and its surrounding context into multi-dimensional deep-meaning labels, enabling label-enhanced retrieval. A token-level novelty estimator then reranks candidates while mitigating auto-regressive continuation bias. Experiments on bilingual datasets spanning diverse real-world domains show that our system recommends quotations that human judges rate as more appropriate, more novel, and more engaging than other baselines, while matching or surpassing existing methods in novelty estimation.

cs.IR↗

arXiv2025

Task-Aware Image Signal Processor for Advanced Visual Perception

In recent years, there has been a growing trend in computer vision towards exploiting RAW sensor data, which preserves richer information compared to conventional low-bit RGB images. Early studies mainly focused on enhancing visual quality, while more recent efforts aim to leverage the abundant information in RAW data to improve the performance of visual perception tasks such as object detection and segmentation. However, existing approaches still face two key limitations: large-scale ISP networks impose heavy computational overhead, while methods based on tuning traditional ISP pipelines are restricted by limited representational capacity.To address these issues, we propose Task-Aware Image Signal Processing (TA-ISP), a compact RAW-to-RGB framework that produces task-oriented representations for pretrained vision models. Instead of heavy dense convolutional pipelines, TA-ISP predicts a small set of lightweight, multi-scale modulation operators that act at global, regional, and pixel scales to reshape image statistics across different spatial extents. This factorized control significantly expands the range of spatially varying transforms that can be represented while keeping memory usage, computation, and latency tightly constrained. Evaluated on several RAW-domain detection and segmentation benchmarks under both daytime and nighttime conditions, TA-ISP consistently improves downstream accuracy while markedly reducing parameter count and inference time, making it well suited for deployment on resource-constrained devices.

cs.CV↗

arXiv2025

Exploring the third dimension in quantum confinement of surface electrons

Quantum confinement of surface electrons in two-dimensional metal-organic porous networks offers a powerful route to engineer electronic states for emerging quantum and spintronic technologies at the molecular scale. To date, such confinement has been understood primarily in terms of lateral, two-dimensional surface potential landscapes. Here, we demonstrate the pivotal role of vertical variations in the surface potential on the quantum confinement of surface electrons. We investigate the confinement behavior of both Shockley surface state and image potential state electrons with their distinct vertical electron density distributions in an exemplary Cu-T4PT metal-organic porous network on Cu(111). Advanced spectroscopic techniques reveal a substantial band renormalization for the image state electrons, manifested as a significant increase in their effective mass, whereas the Shockley state electrons remain almost unchanged. Such striking divergence is attributed to the distinct three-dimensional potential landscape of the Cu-T4PT network with a strong repulsive potential at the vertical position of the molecular backbone and leaky channels underneath the Cu coordination spheres. Our findings demonstrate the essential role of vertical potential engineering in designing quantum confined states and thus advance the control of electronic properties and quantum phenomena on the nanoscale.

cond-mat.mtrl-sci↗

arXiv2025

Enhancing point cloud analysis via neighbor aggregation correction based on cross-stage structure correlation

Point cloud analysis is the cornerstone of many downstream tasks, among which aggregating local structures is the basis for understanding point cloud data. While numerous works aggregate neighbor using three-dimensional relative coordinates, there are irrelevant point interference and feature hierarchy gap problems due to the limitation of local coordinates. Although some works address this limitation by refining spatial description though explicit modeling of cross-stage structure, these enhancement methods based on direct geometric structure encoding have problems of high computational overhead and noise sensitivity. To overcome these problems, we propose the Point Distribution Set Abstraction module (PDSA) that utilizes the correlation in the high-dimensional space to correct the feature distribution during aggregation, which improves the computational efficiency and robustness. PDSA distinguishes the point correlation based on a lightweight cross-stage structural descriptor, and enhances structural homogeneity by reducing the variance of the neighbor feature matrix and increasing classes separability though long-distance modeling. Additionally, we introducing a key point mechanism to optimize the computational overhead. The experimental result on semantic segmentation and classification tasks based on different baselines verify the generalization of the method we proposed, and achieve significant performance improvement with less parameter cost. The corresponding ablation and visualization results demonstrate the effectiveness and rationality of our method. The code and training weight is available at: https://github.com/AGENT9717/PointDistribution

cs.CV↗

arXiv2025

QUILL: Quotation Generation Enhancement of Large Language Models

While Large language models (LLMs) have become excellent writing assistants, they still struggle with quotation generation. This is because they either hallucinate when providing factual quotations or fail to provide quotes that exceed human expectations. To bridge the gap, we systematically study how to evaluate and improve LLMs' performance in quotation generation tasks. We first establish a holistic and automatic evaluation system for quotation generation task, which consists of five criteria each with corresponding automatic metric. To improve the LLMs' quotation generation abilities, we construct a bilingual knowledge base that is broad in scope and rich in dimensions, containing up to 32,022 quotes. Moreover, guided by our critiria, we further design a quotation-specific metric to rerank the retrieved quotations from the knowledge base. Extensive experiments show that our metrics strongly correlate with human preferences. Existing LLMs struggle to generate desired quotes, but our quotation knowledge base and reranking metric help narrow this gap. Our dataset and code are publicly available at https://github.com/GraceXiaoo/QUILL.

cs.CL↗

arXiv2025

ChemHTS: Hierarchical Tool Stacking for Enhancing Chemical Agents

Large Language Models (LLMs) have demonstrated remarkable potential in scientific research, particularly in chemistry-related tasks such as molecular design, reaction prediction, and property estimation. While tool-augmented LLMs have been introduced to enhance reasoning and computation in these domains, existing approaches suffer from tool invocation errors and lack effective collaboration among diverse tools, limiting their overall performance. To address these challenges, we propose ChemHTS (Chemical Hierarchical Tool Stacking), a novel method that optimizes tool invocation pathways through a hierarchical stacking strategy. ChemHTS consists of two key stages: tool self-stacking warmup and multi-layer decision optimization, enabling LLMs to refine tool usage dynamically. We evaluate ChemHTS across four classical chemistry tasks and demonstrate its superiority over strong baselines, including GPT-4o, DeepSeek-R1, and chemistry-specific models, including ChemDFM. Furthermore, we define four distinct tool-stacking behaviors to enhance interpretability, providing insights into the effectiveness of tool collaboration. Our dataset and code are publicly available at \url{https://github.com/Chang-pw/ChemHTS}.

cs.CE↗

arXiv2025

Accurate RNA 3D structure prediction using a language model-based deep learning approach

Accurate prediction of RNA three-dimensional (3D) structure remains an unsolved challenge. Determining RNA 3D structures is crucial for understanding their functions and informing RNA-targeting drug development and synthetic biology design. The structural flexibility of RNA, which leads to scarcity of experimentally determined data, complicates computational prediction efforts. Here, we present RhoFold+, an RNA language model-based deep learning method that accurately predicts 3D structures of single-chain RNAs from sequences. By integrating an RNA language model pre-trained on ~23.7 million RNA sequences and leveraging techniques to address data scarcity, RhoFold+ offers a fully automated end-to-end pipeline for RNA 3D structure prediction. Retrospective evaluations on RNA-Puzzles and CASP15 natural RNA targets demonstrate RhoFold+'s superiority over existing methods, including human expert groups. Its efficacy and generalizability are further validated through cross-family and cross-type assessments, as well as time-censored benchmarks. Additionally, RhoFold+ predicts RNA secondary structures and inter-helical angles, providing empirically verifiable features that broaden its applicability to RNA structure and function studies.

q-bio.QM↗

arXiv2024

Can Large Language Models Understand Real-World Complex Instructions?

Large language models (LLMs) can understand human instructions, showing their potential for pragmatic applications beyond traditional NLP tasks. However, they still struggle with complex instructions, which can be either complex task descriptions that require multiple tasks and constraints, or complex input that contains long context, noise, heterogeneous information and multi-turn format. Due to these features, LLMs often ignore semantic constraints from task descriptions, generate incorrect formats, violate length or sample count constraints, and be unfaithful to the input text. Existing benchmarks are insufficient to assess LLMs' ability to understand complex instructions, as they are close-ended and simple. To bridge this gap, we propose CELLO, a benchmark for evaluating LLMs' ability to follow complex instructions systematically. We design eight features for complex instructions and construct a comprehensive evaluation dataset from real-world scenarios. We also establish four criteria and develop corresponding metrics, as current ones are inadequate, biased or too strict and coarse-grained. We compare the performance of representative Chinese-oriented and English-oriented models in following complex instructions through extensive experiments. Resources of CELLO are publicly available at https://github.com/Abbey4799/CELLO.

cs.CL↗

arXiv2023

ProNet DB: A proteome-wise database for protein surface property representations and RNA-binding profiles

The rapid growth in the number of experimental and predicted protein structures and more complicated protein structures challenge users in computational biology for utilizing the structural information and protein surface property representation. Recently, AlphaFold2 released the comprehensive proteome of various species, and protein surface property representation plays a crucial role in protein-molecule interaction prediction such as protein-protein interaction, protein-nucleic acid interaction, and protein-compound interaction. Here, we proposed the first comprehensive database, namely ProNet DB, which incorporates multiple protein surface representations and RNA-binding landscape for more than 326,175 protein structures covering 16 model organism proteomes from AlphaFold Protein Structure Database (AlphaFold DB) and experimentally validated protein structures deposited in Protein Data Bank (PDB). For each protein, we provided the original protein structure, surface property representation including hydrophobicity, charge distribution, hydrogen bond, interacting face, and RNA-binding landscape such as RNA binding sites and RNA binding preference. To interpret protein surface property representation and RNA binding landscape intuitively, we also integrate Mol* and Online 3D Viewer to visualize the representation on the protein surface. The pre-computed features are available for the users instantaneously and boost computational biology development including molecular mechanism exploration, geometry-based drug discovery and novel therapeutics development. The server is now available on https://proj.cse.cuhk.edu.hk/aihlab/pronet/.

q-bio.QM↗

arXiv2023

Temperature-driven confinements of surface electrons and adatoms in a weakly interacting 2D organic porous network

Two-dimensional organic porous networks (2DOPNs) have opened new vistas for tailoring the physicochemical characteristics of metallic surfaces. These typically chemically bound nanoporous structures act as periodical quantum wells leading to the 2D confinements of surface electron gases, adatoms and molecular guests. Here we propose a new type of porous network with weakly interacting 2,4,6-triphenyl-1,3,5-triazine (TPT) molecules on a Cu(111) surface, in which a temperature-driven (T-driven) phase transition can reversibly alter the supramolecular structures from a close-packed (CP-TPT) phase to a porous-network (PN-TPT) phase. Crucially, only the low-temperature PN-TPT exhibits subnano-scale cavities that can confine the surface state electrons and metal adatoms. The confined surface electrons undergo a significant electronic band renormalization. To activate the spin degree of freedom, the T-driven PN-TPT structure can additionally trap Co atoms within the cavities, forming highly ordered quantum dots. Our theoretical simulation reveals a complex spin carrier transfer from the confined Co cluster to the neighbouring TPT molecules via the underlying substrate. Our results demonstrate that weakly interacting 2DOPN offers a unique quantum switch capable of steering and controlling electrons and spin at surfaces via tailored quantum confinements.

cond-mat.mtrl-sci↗

arXiv2023

A bioinspired three-stage model for camouflaged object detection

Camouflaged objects are typically assimilated into their backgrounds and exhibit fuzzy boundaries. The complex environmental conditions and the high intrinsic similarity between camouflaged targets and their surroundings pose significant challenges in accurately locating and segmenting these objects in their entirety. While existing methods have demonstrated remarkable performance in various real-world scenarios, they still face limitations when confronted with difficult cases, such as small targets, thin structures, and indistinct boundaries. Drawing inspiration from human visual perception when observing images containing camouflaged objects, we propose a three-stage model that enables coarse-to-fine segmentation in a single iteration. Specifically, our model employs three decoders to sequentially process subsampled features, cropped features, and high-resolution original features. This proposed approach not only reduces computational overhead but also mitigates interference caused by background noise. Furthermore, considering the significance of multi-scale information, we have designed a multi-scale feature enhancement module that enlarges the receptive field while preserving detailed structural cues. Additionally, a boundary enhancement module has been developed to enhance performance by leveraging boundary information. Subsequently, a mask-guided fusion module is proposed to generate fine-grained results by integrating coarse prediction maps with high-resolution feature maps. Our network surpasses state-of-the-art CNN-based counterparts without unnecessary complexities. Upon acceptance of the paper, the source code will be made publicly available at https://github.com/clelouch/BTSNet.

cs.CV↗

arXiv2022

Interpretable RNA Foundation Model from Unannotated Data for Highly Accurate RNA Structure and Function Predictions

Non-coding RNA structure and function are essential to understanding various biological processes, such as cell signaling, gene expression, and post-transcriptional regulations. These are all among the core problems in the RNA field. With the rapid growth of sequencing technology, we have accumulated a massive amount of unannotated RNA sequences. On the other hand, expensive experimental observatory results in only limited numbers of annotated data and 3D structures. Hence, it is still challenging to design computational methods for predicting their structures and functions. The lack of annotated data and systematic study causes inferior performance. To resolve the issue, we propose a novel RNA foundation model (RNA-FM) to take advantage of all the 23 million non-coding RNA sequences through self-supervised learning. Within this approach, we discover that the pre-trained RNA-FM could infer sequential and evolutionary information of non-coding RNAs without using any labels. Furthermore, we demonstrate RNA-FM's effectiveness by applying it to the downstream secondary/3D structure prediction, SARS-CoV-2 genome structure and evolution prediction, protein-RNA binding preference modeling, and gene expression regulation modeling. The comprehensive experiments show that the proposed method improves the RNA structural and functional modelling results significantly and consistently. Despite only being trained with unlabelled data, RNA-FM can serve as the foundational model for the field.

q-bio.QM↗

arXiv2022

American Twitter Users Revealed Social Determinants-related Oral Health Disparities amid the COVID-19 Pandemic

Objectives: To assess self-reported population oral health conditions amid COVID-19 pandemic using user reports on Twitter. Method and Material: We collected oral health-related tweets during the COVID-19 pandemic from 9,104 Twitter users across 26 states (with sufficient samples) in the United States between November 12, 2020 and June 14, 2021. We inferred user demographics by leveraging the visual information from the user profile images. Other characteristics including income, population density, poverty rate, health insurance coverage rate, community water fluoridation rate, and relative change in the number of daily confirmed COVID-19 cases were acquired or inferred based on retrieved information from user profiles. We performed logistic regression to examine whether discussions vary across user characteristics. Results: Overall, 26.70% of the Twitter users discuss wisdom tooth pain/jaw hurt, 23.86% tweet about dental service/cavity, 18.97% discuss chipped tooth/tooth break, 16.23% talk about dental pain, and the rest are about tooth decay/gum bleeding. Women and younger adults (19-29) are more likely to talk about oral health problems. Health insurance coverage rate is the most significant predictor in logistic regression for topic prediction. Conclusion: Tweets inform social disparities in oral health during the pandemic. For instance, people from counties at a higher risk of COVID-19 talk more about tooth decay/gum bleeding and chipped tooth/tooth break. Older adults, who are vulnerable to COVID-19, are more likely to discuss dental pain. Topics of interest vary across user characteristics. Through the lens of social media, our findings may provide insights for oral health practitioners and policy makers.

cs.SI↗

arXiv2022

An Expert System for Redesigning Software for Cloud Applications

Cloud-based software has many advantages. When services are divided into many independent components, they are easier to update. Also, during peak demand, it is easier to scale cloud services (just hire more CPUs). Hence, many organizations are partitioning their monolithic enterprise applications into cloud-based microservices. Recently there has been much work using machine learning to simplify this partitioning task. Despite much research, no single partitioning method can be recommended as generally useful. More specifically, those prior solutions are "brittle"; i.e. if they work well for one kind of goal in one dataset, then they can be sub-optimal if applied to many datasets and multiple goals. In order to find a generally useful partitioning method, we propose DEEPLY. This new algorithm extends the CO-GCN deep learning partition generator with (a) a novel loss function and (b) some hyper-parameter optimization. As shown by our experiments, DEEPLY generally outperforms prior work (including CO-GCN, and others) across multiple datasets and goals. To the best of our knowledge, this is the first report in SE of such stable hyper-parameter optimization. To aid reuse of this work, DEEPLY is available on-line at https://bit.ly/2WhfFlB.

cs.LG↗

arXiv2021

Mono2Micro: A Practical and Effective Tool for Decomposing Monolithic Java Applications to Microservices

In migrating production workloads to cloud, enterprises often face the daunting task of evolving monolithic applications toward a microservice architecture. At IBM, we developed a tool called Mono2Micro to assist with this challenging task. Mono2Micro performs spatio-temporal decomposition, leveraging well-defined business use cases and runtime call relations to create functionally cohesive partitioning of application classes. Our preliminary evaluation of Mono2Micro showed promising results. How well does Mono2Micro perform against other decomposition techniques, and how do practitioners perceive the tool? This paper describes the technical foundations of Mono2Micro and presents results to answer these two questions. To answer the first question, we evaluated Mono2Micro against four existing techniques on a set of open-source and proprietary Java applications and using different metrics to assess the quality of decomposition and tool's efficiency. Our results show that Mono2Micro significantly outperforms state-of-the-art baselines in specific metrics well-defined for the problem domain. To answer the second question, we conducted a survey of twenty-one practitioners in various industry roles who have used Mono2Micro. This study highlights several benefits of the tool, interesting practitioner perceptions, and scope for further improvements. Overall, these results show that Mono2Micro can provide a valuable aid to practitioners in creating functionally cohesive and explainable microservice decompositions.

cs.SE↗