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Jinfeng Zhang

Publications and source records attributed to Jinfeng Zhang.

At least 19 recordsLinked to original sources

Adaptive Retrieval Strategies for Biomedical Question Answering

Biomedical question answering (QA) encompasses diverse question types, including yes/no, factoid, list, and summary questions, each requiring distinct forms of evidence and reasoning. However, most retrieval-augmented QA systems rely on a unified retrieval pipeline, regardless of the information needs of different question categories. This one-size-fits-all approach may limit the effectiveness of evidence acquisition and downstream answer generation. In this work, we propose an adaptive retrieval framework that selects retrieval and evidence aggregation strategies according to question type. The system combines query understanding, biomedical document retrieval, reranking, knowledge graph augmentation, document clustering, and large language model-based answer generation. For yes/no questions, it focuses on precise evidence retrieval; for factoid and list questions, it emphasizes entity-oriented retrieval and clustering; and for summary questions, it performs broader evidence collection and synthesis. We evaluate the proposed framework on the BioASQ benchmark and demonstrate that adaptive retrieval strategies improve evidence relevance and answer quality across multiple question types. Our results suggest that aligning retrieval mechanisms with question-specific information needs provides an effective direction for enhancing retrieval-augmented biomedical QA systems.

cs.IR

Symmetry-engineered and electrically tunable in-plane anomalous Hall effect in oxide heterostructures

The family of Hall effects has long served as a premier probe of how symmetry, magnetic order, and topology intertwine in solids. Recently, the in-plane anomalous Hall effect (IP-AHE), a transverse Hall response driven by in-plane magnetization, has emerged as a distinct member of this family, offering innovative spintronic functionalities and illuminating intricate interplay between mirror-symmetry breaking and in-plane magnetic order. However, practical routes to deterministically and reversibly control IP-AHE remain limited. Here, we establish a symmetry-engineered IP-AHE platform, CaRuO3/La2/3Ca1/3MnO3/CaRuO3 heterostructure on NdGaO3(110), that turns strict mirror-symmetry breaking constraints into effective tuning knobs. IP-AHE in these epitaxial trilayers unambiguously couples to the CaRuO3-buffer-induced mirror-symmetry breaking and faithfully reproduces the ferromagnetic hysteresis. Ionic liquid gating further enables reversible reconfigurations of the symmetry breaking, thereby achieving electrical modulation and ON/OFF switching of IP-AHE. This highly tunable IP-AHE platform opens pathways for exploring nontrivial magnetic order and developing programmable Hall functionalities in planar geometries.

cond-mat.str-el

A single-phase epitaxially grown ferroelectric perovskite nitride

The integration of ferroelectrics with semiconductors is crucial for developing functional devices, such as field-effect transistors, tunnel junctions, and nonvolatile memories. However, the synthesis of high-quality single-crystalline ferroelectric nitride perovskites has been limited, hindering a comprehensive understanding of their switching dynamics and potential applications. Here we report the synthesis and characterizations of epitaxial single-phase ferroelectric cerium tantalum nitride (CeTaN3) on both oxides and semiconductors. The polar symmetry of CeTaN3 was confirmed by observing the atomic displacement of central ions relative to the center of the TaN6 octahedra, as well as through optical second harmonic generation. We observed switchable ferroelectric domains in CeTaN3 films using piezo-response force microscopy, complemented by the characterization of square-like polarization-electric field hysteresis loops. The remanent polarization of CeTaN3 reaches approximately 20 uC/cm2 at room temperature, consistent with theoretical calculations. This work establishes a vital link between ferroelectric nitride perovskites and their practical applications, paving the way for next-generation information and energy-storage devices with enhanced performance, scalability, and manufacturability.

cond-mat.mtrl-sci

Topotactic Reduction-Driven Crystal Field Excitations in Brownmillerite Manganite Thin Films

Topotactic reduction of perovskite oxides offers a powerful approach for discovering novel phenomena, such as superconducting infinite-layer nickelates and polar metallicity, and is commonly accompanied by the emergence of multiple valence states and/or complex crystal fields of transition metals. However, understanding the complex interplay between crystal chemistry, electronic structure, and physical properties at the spin- and orbital-resolved levels in these reduced systems remains elusive. Here, we combine x-ray absorption spectroscopy, resonant inelastic x-ray scattering (RIXS), and density functional theory calculations to uncover topotactic metal-insulator transition and orbital-specific crystal field excitations in brownmillerite La0.67Ca0.33MnO2.5 thin films. We reveal the Mn valence states to be predominantly Mn2+/Mn3+, along with their corresponding populations at octahedral and tetrahedral sites, which effectively weaken the Mn-O hybridization compared to the parent perovskite phase. As a result, La0.67Ca0.33MnO2.5 films exhibit an antiferromagnetic insulating ground state. Moreover, by combining the RIXS measurements on selected single-valence manganites, specifically MnO, LaMnO3, and CaMnO3, with orbital- and spin-resolved density-of-states calculations, we identify the dd excitations of octahedrally and tetrahedrally coordinated Mn2+/Mn3+ ions, directly linking the microscopic electronic structure to the macroscopic magnetic/electrical properties.

cond-mat.mtrl-sci

Geometric-combinatorial approaches to tilting theory for weighted projective lines

We provide a geometric-combinatorial model for the category of coherent sheaves on the weighted projective line of type (2,2,n) via a cylindrical surface with n marked points on each of its upper and lower boundaries, equipped with an order 2 self-homeomorphism. A bijection is established between indecomposable sheaves on the weighted projective line and skew-curves on the surface. Moreover, by defining a skew-arc as a self-compatible skew-curve and a pseudo-triangulation as a maximal set of distinct pairwise compatible skew-arcs, we show that pseudo-triangulations correspond bijectively to tilting sheaves. Under this bijection, the flip of a skew-arc within a pseudo-triangulation coincides with the tilting mutation. As an application, we prove the connectivity of the tilting graph for the category of coherent sheaves.

math.RT

Geometric model for vector bundles via infinite marked strips

We present a geometric model for the category of vector bundles over the weighted projective line of type (2,2,n). This model is based on the orbit space of an infinite marked strip under a specific group action. We establish a bijection between indecomposable bundles and orbits of line segments on the strip, which yields geometric interpretations for various aspects, including the Picard group action, vector bundle duality, dimension of extension group, projective cover and injective hull of extension bundle, etc.

math.RT

Data-Driven Assessment of the County-Level Breast Cancer Incidence in the United States: Impacts of Modifiable and Non-Modifiable Factors

Female breast cancer (FBC) incidence rate (IR) varies greatly by counties across the United States (US). Factors responsible for such high spatial disparities are not well understood, making it challenging to design effective intervention strategies. We predicted FBC IRs using prevailing machine learning techniques for 1,754 US counties with a female population over 10,000. Outlier counties with the unexpectedly high or low FBC IRs were identified by controlling the non-modifiable factors (demographics and socioeconomics). Impacts of the modifiable factors (lifestyle, healthcare accessibility, and environment) were mapped. Our study also shed light on hidden FBC risk factors at the regional scale. Methods developed in our study may be used to discover the place-specific, population-level, modifiable factors for the intervention of other types of cancer or chronic diseases.

stat.AP

Information Retrieval and Classification of Real-Time Multi-Source Hurricane Evacuation Notices

For an approaching disaster, the tracking of time-sensitive critical information such as hurricane evacuation notices is challenging in the United States. These notices are issued and distributed rapidly by numerous local authorities that may spread across multiple states. They often undergo frequent updates and are distributed through diverse online portals lacking standard formats. In this study, we developed an approach to timely detect and track the locally issued hurricane evacuation notices. The text data were collected mainly with a spatially targeted web scraping method. They were manually labeled and then classified using natural language processing techniques with deep learning models. The classification of mandatory evacuation notices achieved a high accuracy (recall = 96%). We used Hurricane Ian (2022) to illustrate how real-time evacuation notices extracted from local government sources could be redistributed with a Web GIS system. Our method applied to future hurricanes provides live data for situation awareness to higher-level government agencies and news media. The archived data helps scholars to study government responses toward weather warnings and individual behaviors influenced by evacuation history. The framework may be applied to other types of disasters for rapid and targeted retrieval, classification, redistribution, and archiving of real-time government orders and notifications.

cs.IR

Super-tetragonal Sr4Al2O7: a versatile sacrificial layer for high-integrity freestanding oxide membranes

Releasing the epitaxial oxide heterostructures from substrate constraints leads to the emergence of various correlated electronic phases and paves the way for integrations with advanced semiconductor technologies. Identifying a suitable water-soluble sacrificial layer, compatible with the high-quality epitaxial growth of oxide heterostructures, is currently the key to the development of large-scale freestanding oxide membranes. In this study, we unveil the super-tetragonal Sr4Al2O7 (SAOT) as a promising water-soluble sacrificial layer. The distinct low-symmetric crystal structure of SAOT enables a superior capability to sustain epitaxial strain, thus allowing for broad tunability in lattice constants. The resultant structural coherency and defect-free interface in perovskite ABO3/SAOT heterostructures effectively restrain crack formations during the water-assisted release of freestanding oxide membranes. For a variety of non-ferroelectric oxide membranes, the crack-free areas can span up to a few millimeters in length scale. These compelling features, combined with the inherent high-water solubility, make SAOT a versatile and feasible sacrificial layer for producing high-quality freestanding oxide membranes, thereby boosting their potential for innovative oxide electronics and flexible device designs.

cond-mat.mtrl-sci

Highly Tunable Perpendicular Magnetic Anisotropy and Anisotropic Magnetoresistance in Ru-doped La0.67Sr0.33MnO3 Epitaxial Films

As a prototypical half-metallic ferromagnet, La0.67Sr0.33MnO3 (LSMO) has been extensively studied due to its versatile physical properties and great potential in spintronic applications. However, the weak perpendicular magnetic anisotropy (PMA) limits the controllability and detection of magnetism in LSMO, thus hindering the realization of oxide-based spintronic devices with low energy consumption and high integration level. Motivated by this challenge, we develop an experimental approach to enhance the PMA of LSMO epitaxial films. By cooperatively introducing 4d Ru doping and a moderate compressive strain, the maximum uniaxial magnetic anisotropy in Ru-doped LSMO can reach 3.0 to 1E5 J/m3 at 10 K. Furthermore, we find a significant anisotropic magnetoresistance effect in these Ru-doped LSMO films, which is dominated by the strong PMA. Our findings offer an effective pathway to harness and detect the orientations of magnetic moments in LSMO films, thus promoting the feasibility of oxide-based spintronic devices, such as spin valves and magnetic tunnel junctions.

cond-mat.mtrl-sci

Ru doping induced spin frustration and enhancement of the room-temperature anomalous Hall effect in La2/3Sr1/3MnO3 films

In transition-metal-oxide heterostructures, the anomalous Hall effect (AHE) is a powerful tool for detecting the magnetic state and revealing intriguing interfacial magnetic orderings. However, achieving a larger AHE at room temperature in oxide heterostructures is still challenging due to the dilemma of mutually strong spin-orbit coupling and magnetic exchange interactions. Here, we exploit the Ru doping-enhanced AHE in LSMRO epitaxial films. As the B-site Ru doping level increases up to 20 percent, the anomalous Hall resistivity at room temperature can be enhanced from nOhmcm to uOhmcm scale. Ru doping leads to strong competition between ferromagnetic double-exchange interaction and antiferromagnetic super-exchange interaction. The resultant spin frustration and spin-glass state facilitate a strong skew-scattering process, thus significantly enhancing the extrinsic AHE. Our findings could pave a feasible approach for boosting the controllability and reliability of oxide-based spintronic devices.

cond-mat.mtrl-sci

Braiding lateral morphotropic grain boundary in homogeneitic oxides

Interfaces formed by correlated oxides offer a critical avenue for discovering emergent phenomena and quantum states. However, the fabrication of oxide interfaces with variable crystallographic orientations and strain states integrated along a film plane is extremely challenge by conventional layer-by-layer stacking or self-assembling. Here, we report the creation of morphotropic grain boundaries (GBs) in laterally interconnected cobaltite homostructures. Single-crystalline substrates and suspended ultrathin freestanding membranes provide independent templates for coherent epitaxy and constraint on the growth orientation, resulting in seamless and atomically sharp GBs. Electronic states and magnetic behavior in hybrid structures are laterally modulated and isolated by GBs, enabling artificially engineered functionalities in the planar matrix. Our work offers a simple and scalable method for fabricating unprecedented innovative interfaces through controlled synthesis routes as well as provides a platform for exploring potential applications in neuromorphics, solid state batteries, and catalysis.

cond-mat.mtrl-sci

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations

The COVID-19 pandemic has been severely impacting global society since December 2019. Massive research has been undertaken to understand the characteristics of the virus and design vaccines and drugs. The related findings have been reported in biomedical literature at a rate of about 10,000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200,000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g., Diagnosis and Treatment) to the articles in LitCovid. Despite the continuing advances in biomedical text mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset, consisting of over 30,000 articles with manually reviewed topics, was created for training and testing. It is one of the largest multilabel classification datasets in biomedical scientific literature. 19 teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181, and 0.9394 for macro F1-score, micro F1-score, and instance-based F1-score, respectively. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development.

cs.DL

Phase-resolved ocean wave forecast with simultaneous current estimation through data assimilation

In Wang & Pan (J. Fluid Mech., vol. 918, A19, 2021), the authors developed the first ensemble-based data assimilation (DA) capability for the reconstruction and forecast of ocean surface waves, namely the EnKF-HOS method coupling an ensemble Kalman filter (EnKF) and the high-order spectral (HOS) method. In this work, we continue to enrich the method by allowing it to simultaneously estimate the ocean current field, which is in general not known a priori and can (slowly) vary in both space and time. To achieve this goal, we incorporate the effect of ocean current (as unknown parameters) on waves to build the HOS-C method as the forward prediction model, and obtain a simultaneous estimation of (current) parameters and (wave) states via an iterative EnKF (IEnKF) method that is necessary to handle the complexity in this DA problem. The new algorithm, named IEnKF-HOS-C method, is first tested in synthetic problems with various forms (steady/unsteady, uniform/non-uniform) of current. It is shown that the IEnKF-HOS-C method is able to not only estimate the current field accurately, but also boost the prediction accuracy of the wave field (even) relative to the state-of-the-art EnKF-HOS method. Finally, using real data from a shipborne radar, we show that the IEnKF-HOS-C method successfully recovers the current speed that matches the in situ measurement by a floating buoy.

physics.flu-dyn

Flexoelectric control of a ferromagnetic metal

Electric fields have played a key role in discovering and controlling exotic electronic states of condensed matter. However, electric fields usually do not work in metals as free carriers tend to screen electrostatic fields. While a pseudo-electric field generated by inhomogeneous lattice strain, namely a flexoelectric field, can in principle work in all classes of materials, it remains experimentally unexplored in metals. Here, using heteroepitaxy and atomic-scale imaging, we show that flexoelectric fields can polarize a metallic oxide SrRuO3 with unexpectedly large Ru off-center displacements. We also observe that the flexoelectrically induced polar state of SrRuO3 leads to sizable lattice expansion, similar to the electrostrictive expansion caused by ionic displacements in dielectrics under an external electric field. We further suggest that flexoelectrically driven Ru off-centering promotes strong coupling between lattice and electronic degrees of freedom, possibly enhancing the ferromagnetism of SrRuO3. Beyond conventional electric fields, flexoelectric fields may universally engender novel electronic states and their control via pure atomic displacements in a nondestructive and fast manner.

cond-mat.mtrl-sci

A PubMedBERT-based Classifier with Data Augmentation Strategy for Detecting Medication Mentions in Tweets

As a major social media platform, Twitter publishes a large number of user-generated text (tweets) on a daily basis. Mining such data can be used to address important social, public health, and emergency management issues that are infeasible through other means. An essential step in many text mining pipelines is named entity recognition (NER), which presents some special challenges for tweet data. Among them are nonstandard expressions, extreme imbalanced classes, and lack of context information, etc. The track 3 of BioCreative challenge VII (BC7) was organized to evaluate methods for detecting medication mentions in tweets. In this paper, we report our work on BC7 track 3, where we explored a PubMedBERT-based classifier trained with a combination of multiple data augmentation approaches. Our method achieved an F1 score of 0.762, which is substantially higher than the mean of all submissions (0.696).

cs.CL

Towards Better Modeling Hierarchical Structure for Self-Attention with Ordered Neurons

Recent studies have shown that a hybrid of self-attention networks (SANs) and recurrent neural networks (RNNs) outperforms both individual architectures, while not much is known about why the hybrid models work. With the belief that modeling hierarchical structure is an essential complementary between SANs and RNNs, we propose to further enhance the strength of hybrid models with an advanced variant of RNNs - Ordered Neurons LSTM (ON-LSTM), which introduces a syntax-oriented inductive bias to perform tree-like composition. Experimental results on the benchmark machine translation task show that the proposed approach outperforms both individual architectures and a standard hybrid model. Further analyses on targeted linguistic evaluation and logical inference tasks demonstrate that the proposed approach indeed benefits from a better modeling of hierarchical structure.

cs.CL

Simulation Study on a New Peer Review Approach

The increasing volume of scientific publications and grant proposals has generated an unprecedentedly high workload to scientific communities. Consequently, review quality has been decreasing and review outcomes have become less correlated with the real merits of the papers and proposals. A novel distributed peer review (DPR) approach has recently been proposed to address these issues. The new approach assigns principal investigators (PIs) who submitted proposals (or papers) to the same program as reviewers. Each PI reviews and ranks a small number (such as seven) of other PIs' proposals. The individual rankings are then used to estimate a global ranking of all proposals using the Modified Borda Count (MBC). In this study, we perform simulation studies to investigate several parameters important for the decision making when adopting this new approach. We also propose a new method called Concordance Index-based Global Ranking (CIGR) to estimate global ranking from individual rankings. An efficient simulated annealing algorithm is designed to search the optimal Concordance Index (CI). Moreover, we design a new balanced review assignment procedure, which can result in significantly better performance for both MBC and CIGR methods. We found that CIGR performs better than MBC when the review quality is relatively high. As review quality and review difficulty are tightly correlated, we constructed a boundary in the space of review quality vs review difficulty that separates the CIGR-superior and MBC-superior regions. Finally, we propose a multi-stage DPR strategy based on CIGR, which has the potential to substantially improve the overall review performance while reducing the review workload.

cs.DL