arXiv subjects

Jing Yan

Publications and source records attributed to Jing Yan.

36 records · Page 2Linked to original sources

arXiv2022

Interfacial Cavitation

Cavitation has long been recognized as a crucial predictor, or precursor, to the ultimate failure of various materials, ranging from ductile metals to soft and biological materials. Traditionally, cavitation in solids is defined as an unstable expansion of a void or a defect within a material. The critical applied load needed to trigger this instability - the critical pressure - is a lengthscale independent material property and has been predicted by numerous theoretical studies for a breadth of constitutive models. While these studies usually assume that cavitation initiates from defects in the bulk of an otherwise homogeneous medium, an alternative and potentially more ubiquitous scenario can occur if the defects are found at interfaces between two distinct media within the body. Such interfaces are becoming increasingly common in modern materials with the use of multi-material composites and layer-by-layer additive manufacturing methods. However, a criterion to determine the threshold for interfacial failure, in analogy to the bulk cavitation limit, has yet to be reported. In this work we fill this gap. Our theoretical model captures a lengthscale independent limit for interfacial cavitation, and is shown to agree with our observations at two distinct lengthscales, via two different experimental systems. To further understand the competition between the two cavitation modes (bulk versus interface) we expand our investigation beyond the elastic response to understand the ensuing unstable propagation of delamination at the interface. A phase diagram summarizes these results, showing regimes in which interfacial failure becomes the dominant mechanism.

cond-mat.soft↗

arXiv2021

Active phase separation by turning toward regions of higher density

Studies of active matter, from molecular assemblies to animal groups, have revealed two broad classes of behavior: a tendency to align yields orientational order and collective motion, whereas particle repulsion leads to self-trapping and motility-induced phase separation. Here, we report a third class of behavior: orientational interactions that produce active phase separation. Combining theory and experiments on self-propelled Janus colloids, we show that stronger repulsion on the rear than on the front of these particles produces non-reciprocal torques that reorient particle motion toward high-density regions. Particles thus self-propel toward crowded areas, which leads to phase separation. Clusters remain fluid and exhibit fast particle turnover, in contrast to the jammed clusters that typically arise from self-trapping, and interfaces are sufficiently wide that they span entire clusters. Overall, our work identifies a torque-based mechanism for phase separation in active fluids, and our theory predicts that these orientational interactions yield coexisting phases that lack internal orientational order.

cond-mat.soft↗

arXiv2021

Nonlinear Inclusion Theory with Application to the Growth and Morphogenesis of a Confined Body

One of the most celebrated contributions to the study of the mechanical behavior of materials is due to J.D. Eshelby, who in the late 50s revolutionized our understanding of the elastic stress and strain fields due to an ellipsoidal inclusion/inhomogeneity that undergoes a transformation of shape and size. While Eshelby's work laid the foundation for significant advancements in various fields, including fracture mechanics, theory of phase transitions, and homogenization methods, its extension into the range of large deformations, and to situations in which the material can actively reorganize in response to the finite transformation strain, is in a nascent state. Beyond the theoretical difficulties imposed by highly nonlinear material response, a major hindrance has been the absence of experimental observations that can elucidate the intricacies that arise in this regime. To address this limitation, our experimental observations reveal the key morphogenesis steps of Vibrio cholerae biofilms embedded in hydrogels, as they grow by four orders of magnitude from their initial size. Using the biofilm growth as a case study, our theoretical model considers various growth scenarios and employs two different and complimentary methods -- a minimal analytical model and finite element computations -- to obtain approximate equilibrium solutions. A particular emphasis is put on determining the natural growth path of an inclusion that optimizes its shape in response to the confinement, and the onset of damage in the matrix, which together explain the observed behavior of biofilms. Beyond bacterial biofilms, this work sheds light on the role of mechanics in determining the morphogenesis pathways of confined growing bodies and thus applies to a broad range of phenomena that are ubiquitous in both natural and engineered material systems.

cond-mat.soft↗

arXiv2021

Biofilm self-patterning: mechanical forces drive a reorientation cascade

In growing active matter systems, a large collection of engineered or living autonomous units metabolize free energy and create order at different length scales as they proliferate and migrate collectively. One such example is bacterial biofilms, which are surface-attached aggregates of bacterial cells embedded in an extracellular matrix. However, how bacterial growth coordinates with cell-surface interactions to create distinctive, long-range order in biofilms remains elusive. Here we report a collective cell reorientation cascade in growing Vibrio cholerae biofilms, leading to a differentially ordered, spatiotemporally coupled core-rim structure reminiscent of a blooming aster. Cell verticalization in the core generates differential growth that drives radial alignment of the cells in the rim, while the radially aligned rim in turn generates compressive stresses that expand the verticalized core. Such self-patterning disappears in adhesion-less mutants but can be restored through opto-manipulation of growth. Agent-based simulations and two-phase active nematic modeling reveal the strong interdependence of the driving forces for the differential ordering. Our findings provide insight into the collective cell patterning in bacterial communities and engineering of phenotypes and functions of living active matter.

cond-mat.soft↗

arXiv2020

CO$_2$-driven diffusiophoresis for removal of bacteria

We investigate CO$_2$-driven diffusiophoresis of colloidal particles and bacterial cells in a Hele-Shaw geometry. Combining experiments and a model, we understand the characteristic length and time scales of CO$_2$-driven diffusiophoresis in relation to system dimensions and CO$_2$ diffusivity. Directional migration of wild-type V. cholerae and a mutant lacking flagella, as well as S. aureus and P. aeruginosa, near a dissolving CO$_2$ source shows that diffusiophoresis of bacteria is achieved independent of cell shape and Gram stain. Long-time experiments suggest possible applications for bacterial diffusiophoresis to cleaning systems or anti-biofouling surfaces.

cond-mat.soft↗

arXiv2019

Non-uniform growth and surface friction determine bacterial biofilm morphology on soft substrates

During development, organisms acquire three-dimensional shapes with important physiological consequences. While the basic mechanisms underlying morphogenesis are known in eukaryotes, it is often difficult to manipulate them in vivo. To circumvent this issue, here we present a study of developing Vibrio cholerae biofilms grown on agar substrates in which the spatiotemporal morphological patterns were altered by varying the agar concentration. Expanding biofilms are initially flat, but later experience a mechanical instability and become wrinkled. Whereas the peripheral region develops ordered radial stripes, the central region acquires a zigzag herringbone-like wrinkle pattern. Depending on the agar concentration, the wrinkles initially appear either in the peripheral region and propagate inward (low agar concentration) or in the central region and propagate outward (high agar concentration). To understand these experimental observations, we developed a model that considers diffusion of nutrients and their uptake by bacteria, bacterial growth/biofilm matrix production, mechanical deformation of both the biofilm and the agar, and the friction between them. Our model demonstrates that depletion of nutrients beneath the central region of the biofilm results in radially-dependent growth profiles, which in turn, produce anisotropic stresses that dictate the morphology of wrinkles. Furthermore, we predict that increasing surface friction (agar concentration) reduces stress anisotropy and shifts the location of the maximum compressive stress, where the wrinkling instability first occurs, toward the center of the biofilm, in agreement with our experimental observations. Our results are broadly applicable to bacterial biofilms with similar morphologies and also provide insight into how other bacterial biofilms form distinct wrinkle patterns.

physics.bio-ph↗

arXiv2019

An Ontology-Based Artificial Intelligence Model for Medicine Side-Effect Prediction: Taking Traditional Chinese Medicine as An Example

In this work, an ontology-based model for AI-assisted medicine side-effect (SE) prediction is developed, where three main components, including the drug model, the treatment model, and the AI-assisted prediction model, of proposed model are presented. To validate the proposed model, an ANN structure is established and trained by two hundred and forty-two TCM prescriptions. These data are gathered and classified from the most famous ancient TCM book and more than one thousand SE reports, in which two ontology-based attributions, hot and cold, are introduced to evaluate whether the prescription will cause SE or not. The results preliminarily reveal that it is a relationship between the ontology-based attributions and the corresponding predicted indicator that can be learnt by AI for predicting the SE, which suggests the proposed model has a potential in AI-assisted SE prediction. However, it should be noted that, the proposed model highly depends on the sufficient clinic data, and hereby, much deeper exploration is important for enhancing the accuracy of the prediction.

cs.AI↗

arXiv2018

Cost-aware Cascading Bandits

In this paper, we propose a cost-aware cascading bandits model, a new variant of multi-armed ban- dits with cascading feedback, by considering the random cost of pulling arms. In each step, the learning agent chooses an ordered list of items and examines them sequentially, until certain stopping condition is satisfied. Our objective is then to max- imize the expected net reward in each step, i.e., the reward obtained in each step minus the total cost in- curred in examining the items, by deciding the or- dered list of items, as well as when to stop examina- tion. We study both the offline and online settings, depending on whether the state and cost statistics of the items are known beforehand. For the of- fline setting, we show that the Unit Cost Ranking with Threshold 1 (UCR-T1) policy is optimal. For the online setting, we propose a Cost-aware Cas- cading Upper Confidence Bound (CC-UCB) algo- rithm, and show that the cumulative regret scales in O(log T ). We also provide a lower bound for all α-consistent policies, which scales in Ω(log T ) and matches our upper bound. The performance of the CC-UCB algorithm is evaluated with both synthetic and real-world data.

cs.LG↗

arXiv2018

Verticalization of bacterial biofilms

Biofilms are communities of bacteria adhered to surfaces. Recently, biofilms of rod-shaped bacteria were observed at single-cell resolution and shown to develop from a disordered, two-dimensional layer of founder cells into a three-dimensional structure with a vertically-aligned core. Here, we elucidate the physical mechanism underpinning this transition using a combination of agent-based and continuum modeling. We find that verticalization proceeds through a series of localized mechanical instabilities on the cellular scale. For short cells, these instabilities are primarily triggered by cell division, whereas long cells are more likely to be peeled off the surface by nearby vertical cells, creating an "inverse domino effect". The interplay between cell growth and cell verticalization gives rise to an exotic mechanical state in which the effective surface pressure becomes constant throughout the growing core of the biofilm surface layer. This dynamical isobaricity determines the expansion speed of a biofilm cluster and thereby governs how cells access the third dimension. In particular, theory predicts that a longer average cell length yields more rapidly expanding, flatter biofilms. We experimentally show that such changes in biofilm development occur by exploiting chemicals that modulate cell length.

physics.bio-ph↗

arXiv2016

The Effective Temperature Concept Tested in an Active Colloid Mixture

Thermal energy agitates all matter and its competition with ordering tendencies is one of the most fundamental organizing principles in the physical world. Thus, it is natural to enquire if an effective temperature could result when external energy input enhances agitation. Potentially this could extend the insights of statistical thermodynamics to nonequilibrium systems, but despite proposals that the effective temperature concept may apply to synthetic active matter, biological motors, granular materials and turbulent fluids, its predictive value remains unclear. Here, combining computer simulations and imaging experiments, we design a two-component system of driven Janus colloids such that collisions produced by external energy sources play the role of temperature, and in this system we demonstrate quantitative agreement with hallmarks of statistical thermodynamics for binary phase behavior: the archetypal phase diagram with equilibrium critical exponents, Gaussian displacement distributions, fluctuation-dissipation relations, and capillarity. These quantitative analogies to equilibrium expectations, observed in this decidedly nonequilibrium system, constitute an existence proof from which to compare future theories of nonequilibrium, but limitations of this concept are also highlighted.

cond-mat.stat-mech↗

arXiv2014

Distributed Relay Selection Protocols for Simultaneous Wireless Information and Power Transfer

Harvesting energy from the radio-frequency (RF) signal is an exciting solution to replenish energy in energy-constrained wireless networks. In this paper, an amplify-and-forward (AF) based wireless relay network is considered, where the relay nodes need to harvest energy from the source's RF signal to forward information to the destination. To improve the performance of information transmission, we propose two distributed relay selection protocols, Maximum Harvested Energy (MHE) protocol and Maximum Signal-to-Noise Ratio (MSNR) protocol. Then, we derive the outage probabilities of the system with our proposed relay selection protocols and prove that the proposed selection protocols indeed can improve the system performances and the MSNR protocol outperforms the MHE protocol. Simulation results verify the analysis and theorems. In addition, the effects of key system parameters are also investigated via simulations.

cs.IT↗

arXiv2014

The Laplacian Eigenvalues and Invariants of Graphs

In this paper, we investigate some relations between the invariants (including vertex and edge connectivity and forwarding indices) of a graph and its Laplacian eigenvalues. In addition, we present a sufficient condition for the existence of Hamiltonicity in a graph involving its Laplacian eigenvalues.

math.CO↗

arXiv2014

Orientationally Glassy Crystals of Janus Spheres

Colloidal Janus spheres in water (one hemisphere attractive and the other repulsive) assemble into two-dimensional hexagonal crystals with orientational order controlled by anisotropic interactions. We exploit the decoupled translational and rotational order to quantify the orientational dynamics. Via imaging experiments and Monte Carlo simulations we demonstrate that the correlations in the orientation of individual Janus spheres exhibit glasslike dynamics that can be controlled via the ionic strength. Thus, these colloidal building blocks provide a particularly suitable model glass system for elucidating nontrivial dynamics arising from directional interactions, not captured by the consideration of just translational order.

cond-mat.soft↗

arXiv2013

Power Penalty Due to First-order PMD in Optical OFDM/QAM and FBMC/OQAM Transmission System

Polarization mode dispersion (PMD) is a challenge for high-data-rate optical-communication systems. More researches are desirable for impairments that is induced by PMD in high-speed optical orthogonal frequency division multiplexing (OFDM) transmission system. In this paper, an approximately analytical method for evaluating the power penalty due to first-order PMD in optical OFDM with quadrature amplitude modulation (OFDM/QAM) and filter bank based multi-carrier with offset quadrature amplitude modulation (FBMC/OQAM) transmission system is presented. The simulation results show that, compared with the single carrier with quadrature phase shift keying(SC-QPSK), both the OFDM/QAM and the FBMC/OQAM can decrease the power penalty caused by PMD by half. Furthermore, the FBMC/OQAM shows better power penalty immunity than the OFDM/QAM under the influence of first order PMD.

cs.IT↗

arXiv2012

One possible mechanism for massive neutron star supported by soft EOS

The recently discovery of a massive neutron star (PSR J1614-2230 of $1.97\pm0.04M_{\odot}$) rules out the soft equation of states (EOSs) such as those included hyperons or kaon condensates at high densities, while the nuclear theory or the terrestrial laboratory data prefer a soft EOS. Here we propose one possible mechanism to allow that the observed massive neutron star can be supported by a soft EOS, that is, if the the gravitational constant $G$ varies at super strong field, a soft EOS can support the massive neutron stars.

astro-ph.SR↗

arXiv2011

Preparation and ferroelectric properties of (124)-oriented SrBi4Ti4O15 ferroelectric thin film on (110)-oriented LaNiO3 electrode

A (124)-oriented SrBi4Ti4O15 (SBTi) ferroelectric thin film with high volume fraction of αSBTi(124)=97% was obtained using a metal organic decomposition process on SiO2/Si substrate coated by (110)-oriented LaNiO3 (LNO) thin film. The remanent polarization and coercive field for (124)-oriented SBTi film are 12.1 μC/cm2 and 74 kV/cm, respectively. No evident fatigue of (124)-oriented SBTi thin film can be observed after 1{\times}10e9 switching cycles. Besides, the (124)-oriented SBTi film can be uniformly polarized over large areas using a piezoelectric-mode atomic force microscope. Considering that the annealing temperature was 650°C and the thickness of each deposited layer was merely 30 nm, a long-range epitaxial relationship between SBTi(124) and LNO(110) facets was proposed. The epitaxial relationship was demonstrated based on the crystal structures of SBTi and LNO.

cond-mat.mtrl-sci↗

arXiv2009

Specific-Heat Measurement of Residual Superconductivity in the Normal State of Underdoped Cuprate Superconductors

We have measured the magnetic field and temperature dependence of specific heat on $Bi_2Sr_{2-x}La_xCuO_{6+δ}$ single crystals in wide doping and temperature regions. The superconductivity related specific heat coefficient $γ_{sc}$ and entropy $S_{sc}$ are determined. It is found that $γ_{sc}$ has a hump-like anomaly at $T_c$ and behaves as a long tail which persists far into the normal state for the underdoped samples, but for the heavily overdoped samples the anomaly ends sharply just near $T_c$. Interestingly, we found that the entropy associated with superconductivity is roughly conserved when and only the long tail part in the normal state is taken into account for the underdoped samples, indicating the residual superconductivity above T$_c$.

cond-mat.supr-con↗

arXiv2008

$S$-wave pairing symmetry in non-centrosymmetric superconductor Re$_3$W

The alloys of non-centrosymmetric superconductor, Re$_3$W, which were reported to have an $α$-Mn structure [P. Greenfield and P. A. Beck, J. Metals, N. Y. \textbf{8}, 265 (1959)] with $T_\mathrm{c}=9 $K were prepared by arc melting. The ac susceptibility and low-temperature specific heat were measured on these alloys. It is found that there are two superconducting phases coexisting in the samples with $T_\mathrm{c1}\sim9 $K and $T_\mathrm{c2}\sim7 $K, both of which have a non-centrosymmetric structure as reported previously. By analyzing the specific heat data measured in various magnetic fields, we found that the absence of the inversion symmetry does not lead to the deviation from a s-wave pairing symmetry in Re$_3$W.

cond-mat.supr-con↗