arXiv subjects

Juan Martínez-Sykora

Publications and source records attributed to Juan Martínez-Sykora.

At least 19 recordsLinked to original sources

arXiv2026

The Unstable Chromosphere: Effects of the Thermal Farley-Buneman Instability Across a Broad Range of Solar Chromospheric Conditions

In the coldest regions of the solar atmosphere, lingering discrepancies between models and observations may be caused by the Thermal Farley-Buneman Instability (TFBI). This meter-scale, electrostatic, collisional, multifluid plasma instability converts energy from neutral flows into turbulent motions and heating. In the neutral frame of reference, these neutral flows manifest as an electric field which can drive the TFBI. In this work, we simulate the TFBI across a broad range of solar chromospheric conditions. We find clear proportionality between between TFBI-driven relative temperature increases of charged species ($ΔT_{s}^{\text{(turb)}} / T_{s}^{(0)}$) and driving electric field strength relative to the theoretical threshold field required for TFBI growth. We also discover a correlation between relative driving field strength and turbulent motions. Additionally, the TFBI consistently causes average current density to rotate towards the driving field, with Pederson/ambipolar component ($\vec{J} \cdot \hat{E}^{(0)}$) increasing by up to roughly 60% while the Hall component ($\vec{J} \cdot \hat{E}^{(0)} \times \hat{B}$) decreases in magnitude by up to roughly 80%. Meanwhile, we find TFBI-driven turbulence increases neutral heating rates by $(43\pm7)\%$ on average, with 85% (28/33) of simulations having mean increase more than 29%, and a flat line of best fit suggesting zero correlation with driving field.

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arXiv2026

Multi-fluid multi-species models for inverse FIP-effect

The inverse First Ionization Potential (FIP) effect is rarely observed in the solar atmosphere, and this anomaly poses a challenging problem in understanding physical processes driving this chemical fractionation. In this work, we investigate various scenarios where the inverse FIP effect could occur using simplified 1D multi-fluid MHD models. The model treats the full MHD equations with multi-fluid and multi-species effects, rather than using wave analysis to derive the ponderomotive force and semi-empirical 1D models. In the parametric study considered here, for upward Alfvén waves, one can achieve a negative (opposite) ponderomotive force when the magnetic field strength and the magnetic flux tubes' expansion with height counteract the dissipation and damping effects from multi-fluid interactions.

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arXiv2025

Shock-induced magnetic reconnection driving Ellerman bomb emission and a spicule

The mechanism that forms dynamic type II spicules has remained elusive for many years. Their dynamical behaviour has long been linked to magnetic reconnection, yet no conclusive evidence has been provided. However, one recent observational study found signs of reconnection, as traced by Ellerman bombs (EBs), at the footpoints of many spicules. The triggering of EBs is generally linked to reconnection due to flux emergence and convective motions in the photosphere. We aim to explore whether we can connect EBs to type II spicules, and to what extent we can use EBs as an observational proxy to probe reconnection in this dynamic. We also aim to provide further insight into the mechanisms that trigger EBs. We used a simulation run with the radiative magnetohydrodynamics code Bifrost to track spicules and study the physical processes behind their formation. To detect EBs and classify the spicules, we synthesised the H-alpha line using the multilevel radiative transfer code RH1.5D. We also traced shocks and current sheets to decipher the origin of EBs and spicules. We selected one type II spicule with a strong EB near its footpoint and studied their formation in detail. A magnetoacoustic shock advects the magnetic field lines towards an oppositely directed ambient field, creating a current sheet. The current sheet accelerates dense plasma via a whiplash effect generated by reconnection into the inclined ambient field, launching the spicule. Several EB profiles trace shock- and magnetic-reconnection-induced dynamics during this process at the spicule footpoint. We present a new EB triggering mechanism in which a shock-induced current sheet reconnects, triggering an EB in the lower solar atmosphere. The shock-induced current sheet generates the launch of a type II spicule via reconnection outflows. These results provide a physical origin for the observed connection between EBs and spicules.

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arXiv2025

Systematic non-thermal velocity increase preceding soft X-ray flare onset: A large-scale Hinode/EIS study

Non-thermal velocities, derived from spectral line broadening, can provide crucial insights into plasma dynamics before and during solar flares. To systematically study the pre-flare phase, we constructed a Hinode/Extreme-ultraviolet Imaging Spectrometer (EIS) flare catalog of 1,449 flares from 2011--2024. This enabled a large-scale analysis of flare loop footpoint non-thermal velocity evolution across different flare magnitudes (C, M, X-classes). Analyzing Fe VIII--Fe XXIV emission lines formed at $\log(T/K) \sim 5.7-7.3$ with piecewise linear fits in the pre-flare period, we find that non-thermal velocities consistently increase 4--25 minutes before GOES soft X-ray start in C and M-class flares. Onset timing patterns vary with flare magnitude: smaller flares show temperature-dependent progression, while larger flares exhibit more compressed, near-simultaneous onsets across temperatures. While our limited X-class sample ($N=18$) also show onset before GOES, larger statistics are needed to confirm its behavior. M-class flares show a systematic precursor non-thermal velocity onset $\sim$30--60 minutes before GOES peak. In a subset of M-class flares (2011--2018), CME-associated events show earlier and more uniform precursor onsets (45--74 minutes before peak) than non-CME events, of which only some lines display a precursor, suggesting a strong link between extended pre-flare non-thermal broadening and successful eruptions. This large scale study establishes pre-flare non-thermal velocity increase at footpoints as a common precursor observable before any X-ray signature.

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arXiv2024

On Thermal Conduction in the Solar Atmosphere: An Analytical Solution for Nonlinear Diffusivity without Compact Support

The scientific community employs complicated multiphysics simulations to understand the physics in Solar, Stellar, and Interstellar media. These must be tested against known solutions to ensure their validity. Several well-known tests exist, such as the Sod shock tube test. However, a test for nonlinear diffusivity is missing. This problem is highly relevant in the Solar atmosphere, where various events release energy that subsequently diffuses by Spitzer thermal conductivity. The aim is to derive an analytical solution for nonlinear diffusivity in 1D, 2D, and 3D, which allows for a nonzero background value. The solution will be used to design a test for numerical solvers and study Spitzer conductivity in the Solar atmosphere. There existed an ideal solution assuming zero background value. We perform an analytical first-order perturbation of this solution. The first-order solution is first tested against a dedicated nonlinear diffusion solver, whereupon it is used to benchmark the single- and multifluid radiative magnetohydrodynamics code Ebysus, used to study the Sun. The theory and numerical modeling are used to investigate the role of Spitzer conductivity in the transport of energy released in a nanoflare. The derived analytical solution models nonlinear diffusivity accurately within its region of validity and approximately beyond. Various numerical schemes in the Ebysus code have been found to model Spitzer conductivity correctly. The energy from a representative nanoflare has been found to diffuse 9 Mm within the first second of its lifetime due to Spitzer conductivity alone, strongly dependent on the electron density. The analytical first-order solution is a step forward in ensuring the physical validity of intricate simulations of the Sun. Additionally, since the derivation and argumentation are general, they can easily be followed to treat other nonlinear diffusion problems.

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arXiv2022

The impact of multi-fluid effects in the solar chromosphere on the ponderomotive force under LTE and NEQ ionization conditions

The ponderomotive force is suggested to be the main mechanism to produce the so-called first ionization potential (FIP) effect - the enrichment of low FIP elements observed in the outer solar atmosphere. It is well known that the ionization of these elements occurs within the chromosphere. Therefore, this phenomenon is intimately tied to the plasma state in the chromosphere and the corona. In addition, the chromosphere is a highly complex region with a large variation in the ion-neutral collision frequencies, and hydrogen and helium ionization is largely out of equilibrium. For this study, we combine IRIS observations, a single fluid 2.5D radiative magnetohydrodynamics (MHD) model of the solar atmosphere, including ion-neutral interaction effects and non-equilibrium (NEQ) ionization effects, and a novel multi-fluid multi-species (MFMS) numerical code (Ebysus). Nonthermal velocities of Si IV measured from IRIS spectra can provide an upper limit for the strength of any high-frequency Alfven waves. With the single-fluid model, we investigate the possible impact of NEQ ionization within the region where the FIP may occur and the plasma properties in those regions. These models suggest that regions with strong enhanced network and type II spicules are associated with the presence of large ponderomotive forces. From the plasma properties from the single-fluid MHD model and IRIS observations, we initialize our multi-fluid models to investigate the multi-fluid effects on the ponderomotive force associated with Alfven waves. Our multi-fluid analysis reveals that collisions and NEQ ionization effects dramatically impact the behavior of the ponderomotive force in the chromosphere, and existing theories may need to be revisited.

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arXiv2022

Small-scale chromospheric spectropolarimetric observables in the internetwork from a 3D radiative MHD model

The presence of the magnetic field is critical to transport energy through the solar atmosphere. The new generation of telescopes will provide new insight into how the magnetic field arrives into the chromosphere and its role in the energy balance of the solar atmosphere. We have used a 3D radiative MHD numerical model of the solar atmosphere with high spatial resolution (4~km) calculated with the Bifrost code. This code solves the full MHD equations with non-grey and non-LTE radiative transfer and thermal conduction along magnetic field lines. The model shows how the lower chromosphere in the internetwork, a region dominated by magneto-acoustic shocks and where plasma beta is greater than 1, is able to generate magnetic field in-situ Martinez-Sykora et al 2019. We have synthesized full-polarimetric Stokes profiles from this model for several spectral lines formed in the photosphere and the chromosphere. These synthetic profiles illustrate the types of observables expected from DKIST and IRIS. Our work provides insight into how to interpret observations from these observatories. We find that in order to discern the chromospheric magnetic observables it is crucial to compensate for Doppler shift rather than use fix wavelength range.

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arXiv2022

Multi-fluid Simulation of Solar Chromospheric Turbulence and Heating Due to the Thermal Farley-Buneman Instability

Models fail to reproduce observations of the coldest parts of the Sun's atmosphere, where interactions between multiple ionized and neutral species prevent an accurate MHD representation. This paper argues that a meter-scale electrostatic plasma instability develops in these regions and causes heating. We refer to this instability as the Thermal Farley-Buneman instability, or TFBI. Using parameters from a 2.5D radiative MHD Bifrost simulation, we show that the TFBI develops in many of the colder regions in the chromosphere. This paper also presents the first multi-fluid simulation of the TFBI and validates this new result by demonstrating close agreement with theory during the linear regime. The simulation eventually develops turbulence, and we characterize the resulting wave-driven heating, plasma transport, and random motions. These results all contend that effects of the TFBI contribute to the discrepancies between solar observations and radiative MHD models.

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arXiv2021

Evidence of multithermal nature of spicular downflows. Impact on solar atmospheric heating

Spectroscopic observations of the emission lines formed in the solar transition region (TR) commonly show persistent downflows of the order of 10--15 km/s. The cause of such downflows, however, is still not fully clear and has remained a matter of debate. We aim to understand the cause of such downflows by studying the coronal and TR responses to the recently reported chromospheric downflowing rapid red shifted excursions (RREs), and their impact on heating the solar atmosphere. We have used two sets of coordinated data from SST, IRIS, and SDO for analyzing the response of the downflowing RREs in the TR and corona. To provide theoretical support, we use an already existing 2.5D MHD simulation of spicules performed with the Bifrost code. We find ample occurrences of downflowing RREs and show several examples of their spatio-temporal evolution, sampling multiple wavelength channels ranging from the cooler chromospheric to hotter coronal channels. These downflowing features are thought to be likely associated with the returning components of the previously heated spicular plasma. Furthermore, the TR Doppler shifts associated with them are close to the average red shifts observed in this region which further implies that these flows could (partly) be responsible for the persistent downflows observed in the TR. We also propose two mechanisms (a typical upflow followed by a downflow and downflows along a loop), from the perspective of numerical simulation, that could explain the ubiquitous occurrence of such downflows. A detailed comparison between the synthetic and observed spectral characteristics, reveals a distinctive match, and further suggests an impact on the heating of the solar atmosphere. We present evidence that suggests that at least some of the downflowing RREs are the chromospheric counterparts of the TR and lower coronal downflows.

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arXiv2021

Probing the Physics of the Solar Atmosphere with the Multi-slit Solar Explorer (MUSE): II. Flares and Eruptions

Current state-of-the-art spectrographs cannot resolve the fundamental spatial (sub-arcseconds) and temporal scales (less than a few tens of seconds) of the coronal dynamics of solar flares and eruptive phenomena. The highest resolution coronal data to date are based on imaging, which is blind to many of the processes that drive coronal energetics and dynamics. As shown by IRIS for the low solar atmosphere, we need high-resolution spectroscopic measurements with simultaneous imaging to understand the dominant processes. In this paper: (1) we introduce the Multi-slit Solar Explorer (MUSE), a spaceborne observatory to fill this observational gap by providing high-cadence (<20 s), sub-arcsecond resolution spectroscopic rasters over an active region size of the solar transition region and corona; (2) using advanced numerical models, we demonstrate the unique diagnostic capabilities of MUSE for exploring solar coronal dynamics, and for constraining and discriminating models of solar flares and eruptions; (3) we discuss the key contributions MUSE would make in addressing the science objectives of the Next Generation Solar Physics Mission (NGSPM), and how MUSE, the high-throughput EUV Solar Telescope (EUVST) and the Daniel K Inouye Solar Telescope (and other ground-based observatories) can operate as a distributed implementation of the NGSPM. This is a companion paper to De Pontieu et al. (2021; arXiv:2106.15584), which focuses on investigating coronal heating with MUSE.

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arXiv2020

ALMA and IRIS Observations of the Solar Chromosphere II: Structure and Dynamics of Chromospheric Plage

We propose and employ a novel empirical method for determining chromospheric plage regions, which seems to better isolate plage from its surrounding regions compared to other methods commonly used. We caution that isolating plage from its immediate surroundings must be done with care in order to successfully mitigate statistical biases that, for instance, can impact quantitative comparisons between different chromospheric observables. Using this methodology, our analysis suggests that 1.25 mm wavelength free-free emission in plage regions observed with ALMA/Band6 may not form in the low chromosphere as previously thought, but rather in the upper chromospheric parts of dynamic plage features (such as spicules and other bright structures), i.e., near geometric heights of transition region temperatures. We investigate the high degree of similarity between chromospheric plage features observed in ALMA/Band6 (at 1.25 mm wavelength) and IRIS/Si IV at 1393Å. We also show that IRIS/Mg II h and k is not as well correlated with ALMA/Band6 as was previously thought, and we discuss the discrepancies with previous works. Lastly, we report indications for chromospheric heating due to propagating shocks supported by the ALMA/Band6 observations.

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arXiv2020

ALMA and IRIS Observations of the Solar Chromosphere I: an On-Disk Type II Spicule

We present observations of the solar chromosphere obtained simultaneously with the Atacama Large Millimeter/submillimeter Array (ALMA) and the Interface Region Imaging Spectrograph (IRIS). The observatories targeted a chromospheric plage region of which the spatial distribution (split between strongly and weakly magnetized regions) allowed the study of linear-like structures in isolation, free of contamination from background emission. Using these observations in conjunction with a radiative magnetohydrodynamic 2.5D model covering the upper convection zone all the way to the corona that considers non-equilibrium ionization effects, we report the detection of an on-disk chromospheric spicule with ALMA and confirm its multithermal nature.

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arXiv2020

On the velocity drift between ions in the solar atmosphere

The solar atmosphere is composed of many species which are populated at different ionization and excitation levels. The upper chromosphere, transition region, and corona are nearly collisionless. Consequently, slippage between, for instance, ions and neutral particles, or interactions between separate species, may play important roles. We have developed a 3D multi-fluid and multi-species numerical code (Ebysus) to investigate such effects. Ebysus is capable of treating species (e.g., hydrogen, helium, etc) and fluids (neutrals, excited and ionized elements) separately, including non-equilibrium ionization, momentum exchange, radiation, thermal conduction, and other complex processes in the solar atmosphere. Treating different species as different fluids leads to drifts between different ions and an electric field that couples these motions. The coupling for two ionized fluids can lead to an anti-phase rotational motion between them. Different ionized species and momentum exchange can dissipate this velocity drift, i.e., convert wave kinetic energy into thermal energy. High frequency Alfvén waves driven by, e.g., reconnection thought to occur in the solar atmosphere, can drive such multi-ion velocity drifts.

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arXiv2019

On the origin of the magnetic energy in the quiet solar chromosphere

The presence of magnetic field is crucial in the transport of energy through the solar atmosphere. Recent ground-based and space-borne observations of the quiet Sun have revealed that magnetic field accumulates at photospheric heights, via a local dynamo or from small-scale flux emergence events. However, most of this small-scale magnetic field may not expand into the chromosphere due to the entropy drop with height at the photosphere. Here we present a study that uses a high resolution 3D radiative MHD simulation of the solar atmosphere with non-grey and non-LTE radiative transfer and thermal conduction along the magnetic field to reveal that: 1) the net magnetic flux from the simulated quiet photosphere is not sufficient to maintain a chromospheric magnetic field (on average), 2) processes in the lower chromosphere, in the region dominated by magneto-acoustic shocks, are able to convert kinetic energy into magnetic energy, 3) the magnetic energy in the chromosphere increases linearly in time until the r.m.s. of the magnetic field strength saturates at roughly 4 to 30 G (horizontal average) due to conversion from kinetic energy, 4) and that the magnetic features formed in the chromosphere are localized to this region.

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arXiv2018

Impact of Type II Spicules in the Corona: Simulations and Synthetic Observables

The role of type II spicules in the corona has been a much debated topic in recent years. This paper aims to shed light on the impact of type II spicules in the corona using novel 2.5D radiative MHD simulations including ion-neutral interaction effects with the Bifrost code. We find that the formation of simulated type II spicules, driven by the release of magnetic tension, impacts the corona in various manners. Associated with the formation of spicules, the corona exhibits 1) magneto-acoustic shocks and flows which supply mass to coronal loops, and 2) transversal magnetic waves and electric currents that propagate at Alfvén speeds. The transversal waves and electric currents, generated by the spicule's driver and lasting for many minutes, are dissipated and heat the associated loop. These complex interactions in the corona can be connected with blue shifted secondary components in coronal spectral lines (Red-Blue asymmetries) observed with Hinode/EIS and SOHO/SUMER, as well as the EUV counterpart of type II spicules and propagating coronal disturbances (PCDs) observed with the 171~Å and 193~Å SDO/AIA channels.

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arXiv2018

Bridging the Gap: Capturing the Ly$α$ Counterpart of a Type-II Spicule and its Heating Evolution with VAULT2.0 and IRIS Observations

We present results from an observing campaign in support of the VAULT2.0 sounding rocket launch on September 30, 2014. VAULT2.0 is a Ly$α$ (1216 Å) spectroheliograph capable of providing spectroheliograms at high cadence. Ly$α$ observations are highly complementary to the IRIS observations of the upper chromosphere and the low transition region (TR) but have previously been unavailable. The VAULT2.0 data provide new constraints on upper-chromospheric conditions for numerical models. The observing campaign was closely coordinated with the IRIS mission. Taking advantage of this simultaneous multi-wavelength coverage of target AR 12172 and by using state-of-the-art radiative-MHD simulations of spicules, we investigate in detail a type-II spicule associated with a fast (300 km s$^{-1}$) network jet recorded in the campaign observations. Our analysis suggests that spicular material exists suspended high in the atmosphere but in lower temperatures (seen in Ly$α$) until it is heated and becomes visible in TR temperatures as a network jet. The heating begins lower in the spicule and propagates upwards as a rapidly propagating thermal front. The front is then observed as fast, plane-of-the-sky motion typical of a network jet, but contained inside the pre-existing spicule. This work supports that the high speeds reported in network jets should not be taken as real mass upflows but only as apparent speeds of a rapidly propagating heating front along the pre-existing spicule.

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arXiv2017

On the generation of solar spicules and Alfvénic waves

In the lower solar atmosphere, the chromosphere is permeated by jets known as spicules, in which plasma is propelled at speeds of 50 to 150 kilometers per second into the corona. The origin of the spicules is poorly understood, although they are expected to play a role in heating the million-degree corona and are associated with Alfvénic waves that help drive the solar wind. We compare magnetohydrodynamic simulations of spicules with observations from the Interface Region Imaging Spectrograph and the Swedish 1-m Solar Telescope. Spicules are shown to occur when magnetic tension is amplified and transported upward through interactions between ions and neutrals or ambipolar diffusion. The tension is impulsively released to drive flows, heat plasma (through ambipolar diffusion), and generate Alfvénic waves.

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arXiv2017

On the Misalignment between Chromospheric Features and the Magnetic Field on the Sun

Observations of the upper chromosphere shows an enormous amount of intricate fine structure. Much of this comes in the form of linear features which are most often assumed to be well aligned with the direction of the magnetic field in the low plasma beta regime thought to dominate the upper chromosphere. We use advanced radiative MHD simulations including the effects of ion-neutral interactions (using the generalized Ohm's law) in the partially ionized chromosphere to show that the magnetic field is often not well aligned with chromospheric features. This occurs where the ambipolar diffusion is large, i.e., ions and neutral populations decouple as the ion-neutral collision frequency drops allowing the field to slip through the neutral population, currents perpendicular to the field are strong, and thermodynamic timescales are longer than or similar to the those of ambipolar diffusion. We find this often happens in dynamic spicule or fibril-like features at the top of the chromosphere. This has important consequences for field extrapolation methods which increasingly use such upper chromospheric features to help constrain the chromospheric magnetic field: our results invalidate the underlying assumption that these features are aligned with the field. In addition, our results cast doubt on results from 1D hydrodynamic models, which assume that plasma remains on the same field lines. Finally, our simulations show that ambipolar diffusion significantly alters the amount of free energy available in the coronal part of our simulated volume, which is likely to have consequences for studies of flare initiation.

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