arXiv subjects

Junying Chen

Publications and source records attributed to Junying Chen.

At least 19 recordsLinked to original sources

arXiv2026

GlobalDentBench: A Multinational Benchmark for Evaluating LLM Clinical Reasoning in Dentistry with Expert Calibration

While large language models (LLMs) hold transformative potential for medicine, their reasoning robustness and safety in real-world clinical scenarios remain critically underexplored, particularly in dentistry. Here we introduce GlobalDentBench, the first multinational dental benchmark, featuring a taxonomy that encompasses 14 dental specialties across 88 countries and regions spanning six continents. The benchmark comprises 8,978 expert-validated questions across three formats (multiple-choice, short-answer, and case-based questions) and assesses three progressive reasoning levels: knowledge recall (L1), routine reasoning (L2), and individualized reasoning (L3). To ensure data quality, the automated construction framework was calibrated by six senior dentists, achieving expert agreement rates of 99.98% for multiple-choice and short-answer questions and 96.78% for the more complex case-based questions. Evaluation of 12 frontier LLMs on GlobalDentBench revealed a sharp, stepwise performance degradation with increasing reasoning complexity. Specifically, accuracy plummeted from 81.34% on multiple-choice to 64.53% on short-answer and 22.34% on case-based questions, while declining markedly from 74.01% at L1 to 55.64% at L2 and 35.71% at L3. More critically, risk analysis of real-world dental cases demonstrated an alarming overall unsafe rate of 31.01% in LLM-generated clinical recommendations, with 4.51% posing risks of irreversible patient harm and risks particularly pronounced in specialties such as orthodontics. These findings expose fundamental limitations in the medical reasoning and safety of current LLMs. Consequently, GlobalDentBench provides a scalable foundation for trustworthy clinical AI evaluation, underscoring the urgent need for rigorous validation before the safe deployment of these models in healthcare.

cs.AI↗

arXiv2026

Decouple and Rectify: Semantics-Preserving Structural Enhancement for Open-Vocabulary Remote Sensing Segmentation

Open-vocabulary semantic segmentation in the remote sensing (RS) field requires both language-aligned recognition and fine-grained spatial delineation. Although CLIP offers robust semantic generalization, its global-aligned visual representations inherently struggle to capture structural details. Recent methods attempt to compensate for this by introducing RS-pretrained DINO features. However, these methods treat CLIP representations as a monolithic semantic space and cannot localize where structural enhancement is required, failing to effectively delineate boundaries while risking the disruption of CLIP's semantic integrity. To address this limitation, we propose DR-Seg, a novel decouple-and-rectify framework in this paper. Our method is motivated by the key observation that CLIP feature channels exhibit distinct functional heterogeneity rather than forming a uniform semantic space. Building on this insight, DR-Seg decouples CLIP features into semantics-dominated and structure-dominated subspaces, enabling targeted structural enhancement by DINO without distorting language-aligned semantics. Subsequently, a prior-driven graph rectification module injects high-fidelity structural priors under DINO guidance to form a refined branch, while an uncertainty-guided adaptive fusion module dynamically integrates this refined branch with the original CLIP branch for final prediction. Comprehensive experiments across eight benchmarks demonstrate that DR-Seg establishes a new state-of-the-art.

cs.CV↗

arXiv2026

MicroVerse: A Preliminary Exploration Toward a Micro-World Simulation

Recent advances in video generation have opened new avenues for macroscopic simulation of complex dynamic systems, but their application to microscopic phenomena remains largely unexplored. Microscale simulation holds great promise for biomedical applications such as drug discovery, organ-on-chip systems, and disease mechanism studies, while also showing potential in education and interactive visualization. In this work, we introduce MicroWorldBench, a multi-level rubric-based benchmark for microscale simulation tasks. MicroWorldBench enables systematic, rubric-based evaluation through 459 unique expert-annotated criteria spanning multiple microscale simulation task (e.g., organ-level processes, cellular dynamics, and subcellular molecular interactions) and evaluation dimensions (e.g., scientific fidelity, visual quality, instruction following). MicroWorldBench reveals that current SOTA video generation models fail in microscale simulation, showing violations of physical laws, temporal inconsistency, and misalignment with expert criteria. To address these limitations, we construct MicroSim-10K, a high-quality, expert-verified simulation dataset. Leveraging this dataset, we train MicroVerse, a video generation model tailored for microscale simulation. MicroVerse can accurately reproduce complex microscale mechanism. Our work first introduce the concept of Micro-World Simulation and present a proof of concept, paving the way for applications in biology, education, and scientific visualization. Our work demonstrates the potential of educational microscale simulations of biological mechanisms. Our data and code are publicly available at https://github.com/FreedomIntelligence/MicroVerse

cs.AI↗

arXiv2026

LiveClin: A Live Clinical Benchmark without Leakage

The reliability of medical LLM evaluation is critically undermined by data contamination and knowledge obsolescence, leading to inflated scores on static benchmarks. To address these challenges, we introduce LiveClin, a live benchmark designed for approximating real-world clinical practice. Built from contemporary, peer-reviewed case reports and updated biannually, LiveClin ensures clinical currency and resists data contamination. Using a verified AI-human workflow involving 239 physicians, we transform authentic patient cases into complex, multimodal evaluation scenarios that span the entire clinical pathway. The benchmark currently comprises 1,407 case reports and 6,605 questions. Our evaluation of 26 models on LiveClin reveals the profound difficulty of these real-world scenarios, with the top-performing model achieving a Case Accuracy of just 35.7%. In benchmarking against human experts, Chief Physicians achieved the highest accuracy, followed closely by Attending Physicians, with both surpassing most models. LiveClin thus provides a continuously evolving, clinically grounded framework to guide the development of medical LLMs towards closing this gap and achieving greater reliability and real-world utility. Our data and code are publicly available at https://github.com/AQ-MedAI/LiveClin.

cs.LG↗

arXiv2026

Linear stability of the first bifurcation in a tumor growth free boundary problem via local bifurcation structure

In this paper, we consider a 3-dimensional free boundary problem modeling tumor growth with the Robin boundary condition. The system involves a positive parameter $\mu$ which reflects the intensity of tumor aggressiveness. Huang, Zhang and Hu [Nonlinear Anal. Real World Appl. 2017(35), 483-502] have shown that for each $\mu_n$ ($n$ even) in a strictly increasing sequence $\{ \mu_n \}(n\geq 2)$, there exists a stationary bifurcation solution $(\sigma_n(\varepsilon),p_n(\varepsilon),r_n(\varepsilon))$ with $\mu = \mu_n(\varepsilon)$ bifurcating from $\mu_n$. We first derive that the bifurcation curve $(r_2(\varepsilon),\mu_2(\varepsilon))$ exhibits a transcritical bifurcation with $\mu_2'(0)<0$. Moreover, we show that the stationary bifurcation solution $(\sigma_2(\varepsilon),p_2(\varepsilon),r_2(\varepsilon))$ is linearly unstable for small $|\varepsilon|$ under non-radially symmetric perturbations. In contrast to the linear stability of the radially symmetric stationary solution, the lack of explicit expressions for bifurcation solutions adds great difficulty in analyzing their linear stability. The novelty of this paper lies in the use of the bifurcation curve's structure to overcome the above difficulties. Moreover, this linear stability result is not established using the standard method, due to an eight-dimensional generalized kernel at eigenvalue 0 for the linearized operator.

math.AP↗

arXiv2025

DentalGPT: Incentivizing Multimodal Complex Reasoning in Dentistry

Reliable interpretation of multimodal data in dentistry is essential for automated oral healthcare, yet current multimodal large language models (MLLMs) struggle to capture fine-grained dental visual details and lack sufficient reasoning ability for precise diagnosis. To address these limitations, we present DentalGPT, a specialized dental MLLM developed through high-quality domain knowledge injection and reinforcement learning. Specifically, the largest annotated multimodal dataset for dentistry to date was constructed by aggregating over 120k dental images paired with detailed descriptions that highlight diagnostically relevant visual features, making it the multimodal dataset with the most extensive collection of dental images to date. Training on this dataset significantly enhances the MLLM's visual understanding of dental conditions, while the subsequent reinforcement learning stage further strengthens its capability for multimodal complex reasoning. Comprehensive evaluations on intraoral and panoramic benchmarks, along with dental subsets of medical VQA benchmarks, show that DentalGPT achieves superior performance in disease classification and dental VQA tasks, outperforming many state-of-the-art MLLMs despite having only 7B parameters. These results demonstrate that high-quality dental data combined with staged adaptation provides an effective pathway for building capable and domain-specialized dental MLLMs.

cs.CV↗

arXiv2025

From Large to Small: Transferring CUDA Optimization Expertise via Reasoning Graph

Despite significant evolution of CUDA programming and domain-specific libraries, effectively utilizing GPUs with massively parallel engines remains difficult. Large language models (LLMs) show strong potential in generating optimized CUDA code from sequential code. However, using LLMs in practice faces two major challenges: cloud-based APIs pose risks of code leakage, and local deployment is often computationally expensive and inefficient. These drawbacks have spurred interest in small language models (SLMs), which are more lightweight and privacy-friendly. Encouragingly, recent studies show that SLMs can achieve performance comparable to LLMs on specific tasks. While SLMs can match LLMs on domain-specific tasks, their limited reasoning abilities lead to suboptimal performance in complex CUDA generation according to our experiments. To bridge this gap, we propose ReGraphT, a training-free, retrieval-augmented generation framework that transfers LLM-level reasoning to smaller models. ReGraphT organizes CUDA optimization trajectories into a structured reasoning graph, modeling the combined CUDA optimizations as state transitions, and leverages Monte Carlo Graph Search (MCGS) for efficient exploration. We also present a CUDA-specific benchmark with difficulty tiers defined by reasoning complexity to evaluate models more comprehensively. Experiments show that ReGraphT outperforms HPC-specific fine-tuned models and other retrieval-augmented approaches, achieving an average 2.33X speedup on CUDAEval and ParEval. When paired with DeepSeek-Coder-V2-Lite-Instruct and Qwen2.5-Coder-7B-Instruct, ReGraphT enables SLMs to approach LLM-level performance without the associated privacy risks or excessive computing overhead.

cs.LG↗

arXiv2025

Enabling Doctor-Centric Medical AI with LLMs through Workflow-Aligned Tasks and Benchmarks

The rise of large language models (LLMs) has transformed healthcare by offering clinical guidance, yet their direct deployment to patients poses safety risks due to limited domain expertise. To mitigate this, we propose repositioning LLMs as clinical assistants that collaborate with experienced physicians rather than interacting with patients directly. We conduct a two-stage inspiration-feedback survey to identify real-world needs in clinical workflows. Guided by this, we construct DoctorFLAN, a large-scale Chinese medical dataset comprising 92,000 Q&A instances across 22 clinical tasks and 27 specialties. To evaluate model performance in doctor-facing applications, we introduce DoctorFLAN-test (550 single-turn Q&A items) and DotaBench (74 multi-turn conversations). Experimental results with over ten popular LLMs demonstrate that DoctorFLAN notably improves the performance of open-source LLMs in medical contexts, facilitating their alignment with physician workflows and complementing existing patient-oriented models. This work contributes a valuable resource and framework for advancing doctor-centered medical LLM development

cs.CL↗

arXiv2025

WaveMind: Towards a Conversational EEG Foundation Model Aligned to Textual and Visual Modalities

Electroencephalography (EEG) interpretation using multimodal large language models (MLLMs) offers a novel approach for analyzing brain signals. However, the complex nature of brain activity introduces critical challenges: EEG signals simultaneously encode both cognitive processes and intrinsic neural states, creating a mismatch in EEG paired-data modality that hinders effective cross-modal representation learning. Through a pivot investigation, we uncover complementary relationships between these modalities. Leveraging this insight, we propose mapping EEG signals and their corresponding modalities into a unified semantic space to achieve generalized interpretation. To fully enable conversational capabilities, we further introduce WaveMind-Instruct-338k, the first cross-task EEG dataset for instruction tuning. The resulting model demonstrates robust classification accuracy while supporting flexible, open-ended conversations across four downstream tasks, thereby offering valuable insights for both neuroscience research and the development of general-purpose EEG models.

eess.SP↗

arXiv2025

ShizhenGPT: Towards Multimodal LLMs for Traditional Chinese Medicine

Despite the success of large language models (LLMs) in various domains, their potential in Traditional Chinese Medicine (TCM) remains largely underexplored due to two critical barriers: (1) the scarcity of high-quality TCM data and (2) the inherently multimodal nature of TCM diagnostics, which involve looking, listening, smelling, and pulse-taking. These sensory-rich modalities are beyond the scope of conventional LLMs. To address these challenges, we present ShizhenGPT, the first multimodal LLM tailored for TCM. To overcome data scarcity, we curate the largest TCM dataset to date, comprising 100GB+ of text and 200GB+ of multimodal data, including 1.2M images, 200 hours of audio, and physiological signals. ShizhenGPT is pretrained and instruction-tuned to achieve deep TCM knowledge and multimodal reasoning. For evaluation, we collect recent national TCM qualification exams and build a visual benchmark for Medicinal Recognition and Visual Diagnosis. Experiments demonstrate that ShizhenGPT outperforms comparable-scale LLMs and competes with larger proprietary models. Moreover, it leads in TCM visual understanding among existing multimodal LLMs and demonstrates unified perception across modalities like sound, pulse, smell, and vision, paving the way toward holistic multimodal perception and diagnosis in TCM. Datasets, models, and code are publicly available. We hope this work will inspire further exploration in this field.

cs.CL↗

arXiv2025

TalkVid: A Large-Scale Diversified Dataset for Audio-Driven Talking Head Synthesis

Audio-driven talking head synthesis has achieved remarkable photorealism, yet state-of-the-art (SOTA) models exhibit a critical failure: they lack generalization to the full spectrum of human diversity in ethnicity, language, and age groups. We argue that this generalization gap is a direct symptom of limitations in existing training data, which lack the necessary scale, quality, and diversity. To address this challenge, we introduce TalkVid, a new large-scale, high-quality, and diverse dataset containing 1244 hours of video from 7729 unique speakers. TalkVid is curated through a principled, multi-stage automated pipeline that rigorously filters for motion stability, aesthetic quality, and facial detail, and is validated against human judgments to ensure its reliability. Furthermore, we construct and release TalkVid-Bench, a stratified evaluation set of 500 clips meticulously balanced across key demographic and linguistic axes. Our experiments demonstrate that a model trained on TalkVid outperforms counterparts trained on previous datasets, exhibiting superior cross-dataset generalization. Crucially, our analysis on TalkVid-Bench reveals performance disparities across subgroups that are obscured by traditional aggregate metrics, underscoring its necessity for future research. Code and data can be found in https://github.com/FreedomIntelligence/TalkVid

cs.CV↗

arXiv2025

MedGen: Unlocking Medical Video Generation by Scaling Granularly-annotated Medical Videos

Recent advances in video generation have shown remarkable progress in open-domain settings, yet medical video generation remains largely underexplored. Medical videos are critical for applications such as clinical training, education, and simulation, requiring not only high visual fidelity but also strict medical accuracy. However, current models often produce unrealistic or erroneous content when applied to medical prompts, largely due to the lack of large-scale, high-quality datasets tailored to the medical domain. To address this gap, we introduce MedVideoCap-55K, the first large-scale, diverse, and caption-rich dataset for medical video generation. It comprises over 55,000 curated clips spanning real-world medical scenarios, providing a strong foundation for training generalist medical video generation models. Built upon this dataset, we develop MedGen, which achieves leading performance among open-source models and rivals commercial systems across multiple benchmarks in both visual quality and medical accuracy. We hope our dataset and model can serve as a valuable resource and help catalyze further research in medical video generation. Our code and data is available at https://github.com/FreedomIntelligence/MedGen

cs.CV↗

arXiv2025

ShareGPT-4o-Image: Aligning Multimodal Models with GPT-4o-Level Image Generation

Recent advances in multimodal generative models have unlocked photorealistic, instruction-aligned image generation, yet leading systems like GPT-4o-Image remain proprietary and inaccessible. To democratize these capabilities, we present ShareGPT-4o-Image, the first dataset comprising 45K text-to-image and 46K text-and-image-to-image data, all synthesized using GPT-4o's image generation capabilities for distilling its advanced image generation abilities. Leveraging this dataset, we develop Janus-4o, a multimodal large language model capable of both text-to-image and text-and-image-to-image generation. Janus-4o not only significantly improves text-to-image generation over its predecessor, Janus-Pro, but also newly supports text-and-image-to-image generation. Notably, it achieves impressive performance in text-and-image-to-image generation from scratch, using only 91K synthetic samples and 6 hours of training on an 8 A800-GPU machine. We hope the release of ShareGPT-4o-Image and Janus-4o will foster open research in photorealistic, instruction-aligned image generation.

cs.CV↗

arXiv2025

Do LLMs Triage Like Clinicians? A Dynamic Study of Outpatient Referral

Outpatient referral (OR) is a core clinical workflow that assigns patients to hospital departments under incomplete and evolving information, yet it is commonly simplified as a static classification problem despite being inherently interactive in practice. In this work, we study outpatient referral as a dynamic process driven by information acquisition and uncertainty reduction. We analyze both static scenarios based on fixed patient information and dynamic scenarios involving multi-turn dialogue, to test whether large language models (LLMs) improve referral outcomes through better prediction or more effective questioning. Our findings show that LLMs offer limited advantages over traditional classifiers in static referral accuracy, but consistently outperform them in dynamic settings by asking discriminative follow-up questions that reduce uncertainty over candidate departments. These results suggest that the primary value of LLMs in outpatient referral lies not in static prediction, but in supporting interactive, uncertainty-aware clinical decision-making.

cs.CL↗

arXiv2025

The First Few Tokens Are All You Need: An Efficient and Effective Unsupervised Prefix Fine-Tuning Method for Reasoning Models

Improving the reasoning capabilities of large language models (LLMs) typically requires supervised fine-tuning with labeled data or computationally expensive sampling. We introduce Unsupervised Prefix Fine-Tuning (UPFT), which leverages the observation of Prefix Self-Consistency -- the shared initial reasoning steps across diverse solution trajectories -- to enhance LLM reasoning efficiency. By training exclusively on the initial prefix substrings (as few as 8 tokens), UPFT removes the need for labeled data or exhaustive sampling. Experiments on reasoning benchmarks show that UPFT matches the performance of supervised methods such as Rejection Sampling Fine-Tuning, while reducing training time by 75% and sampling cost by 99%. Further analysis reveals that errors tend to appear in later stages of the reasoning process and that prefix-based training preserves the model's structural knowledge. This work demonstrates how minimal unsupervised fine-tuning can unlock substantial reasoning gains in LLMs, offering a scalable and resource-efficient alternative to conventional approaches.

cs.CL↗

arXiv2024

RAG-Instruct: Boosting LLMs with Diverse Retrieval-Augmented Instructions

Retrieval-Augmented Generation (RAG) has emerged as a key paradigm for enhancing large language models (LLMs) by incorporating external knowledge. However, current RAG methods face two limitations: (1) they only cover limited RAG scenarios. (2) They suffer from limited task diversity due to the lack of a general RAG dataset. To address these limitations, we propose RAG-Instruct, a general method for synthesizing diverse and high-quality RAG instruction data based on any source corpus. Our approach leverages (1) five RAG paradigms, which encompass diverse query-document relationships, and (2) instruction simulation, which enhances instruction diversity and quality by utilizing the strengths of existing instruction datasets. Using this method, we construct a 40K instruction dataset from Wikipedia, comprehensively covering diverse RAG scenarios and tasks. Experiments demonstrate that RAG-Instruct effectively enhances LLMs' RAG capabilities, achieving strong zero-shot performance and significantly outperforming various RAG baselines across a diverse set of tasks. RAG-Instruct is publicly available at https://github.com/FreedomIntelligence/RAG-Instruct.

cs.CL↗

arXiv2024

Exploring Compositional Generalization of Multimodal LLMs for Medical Imaging

Medical imaging provides essential visual insights for diagnosis, and multimodal large language models (MLLMs) are increasingly utilized for its analysis due to their strong generalization capabilities; however, the underlying factors driving this generalization remain unclear. Current research suggests that multi-task training outperforms single-task as different tasks can benefit each other, but they often overlook the internal relationships within these tasks. To analyze this phenomenon, we attempted to employ compositional generalization (CG), which refers to the models' ability to understand novel combinations by recombining learned elements, as a guiding framework. Since medical images can be precisely defined by Modality, Anatomical area, and Task, naturally providing an environment for exploring CG, we assembled 106 medical datasets to create Med-MAT for comprehensive experiments. The experiments confirmed that MLLMs can use CG to understand unseen medical images and identified CG as one of the main drivers of the generalization observed in multi-task training. Additionally, further studies demonstrated that CG effectively supports datasets with limited data and confirmed that MLLMs can achieve CG across classification and detection tasks, underscoring its broader generalization potential. Med-MAT is available at https://github.com/FreedomIntelligence/Med-MAT.

cs.CV↗

arXiv2024

HuatuoGPT-o1, Towards Medical Complex Reasoning with LLMs

The breakthrough of OpenAI o1 highlights the potential of enhancing reasoning to improve LLM. Yet, most research in reasoning has focused on mathematical tasks, leaving domains like medicine underexplored. The medical domain, though distinct from mathematics, also demands robust reasoning to provide reliable answers, given the high standards of healthcare. However, verifying medical reasoning is challenging, unlike those in mathematics. To address this, we propose verifiable medical problems with a medical verifier to check the correctness of model outputs. This verifiable nature enables advancements in medical reasoning through a two-stage approach: (1) using the verifier to guide the search for a complex reasoning trajectory for fine-tuning LLMs, (2) applying reinforcement learning (RL) with verifier-based rewards to enhance complex reasoning further. Finally, we introduce HuatuoGPT-o1, a medical LLM capable of complex reasoning, which outperforms general and medical-specific baselines using only 40K verifiable problems. Experiments show complex reasoning improves medical problem-solving and benefits more from RL. We hope our approach inspires advancements in reasoning across medical and other specialized domains.

cs.CL↗