arXiv subjects

Junying Chen

Publications and source records attributed to Junying Chen.

At least 37 records · Page 2Linked to original sources

arXiv2025

The First Few Tokens Are All You Need: An Efficient and Effective Unsupervised Prefix Fine-Tuning Method for Reasoning Models

Improving the reasoning capabilities of large language models (LLMs) typically requires supervised fine-tuning with labeled data or computationally expensive sampling. We introduce Unsupervised Prefix Fine-Tuning (UPFT), which leverages the observation of Prefix Self-Consistency -- the shared initial reasoning steps across diverse solution trajectories -- to enhance LLM reasoning efficiency. By training exclusively on the initial prefix substrings (as few as 8 tokens), UPFT removes the need for labeled data or exhaustive sampling. Experiments on reasoning benchmarks show that UPFT matches the performance of supervised methods such as Rejection Sampling Fine-Tuning, while reducing training time by 75% and sampling cost by 99%. Further analysis reveals that errors tend to appear in later stages of the reasoning process and that prefix-based training preserves the model's structural knowledge. This work demonstrates how minimal unsupervised fine-tuning can unlock substantial reasoning gains in LLMs, offering a scalable and resource-efficient alternative to conventional approaches.

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arXiv2024

RAG-Instruct: Boosting LLMs with Diverse Retrieval-Augmented Instructions

Retrieval-Augmented Generation (RAG) has emerged as a key paradigm for enhancing large language models (LLMs) by incorporating external knowledge. However, current RAG methods face two limitations: (1) they only cover limited RAG scenarios. (2) They suffer from limited task diversity due to the lack of a general RAG dataset. To address these limitations, we propose RAG-Instruct, a general method for synthesizing diverse and high-quality RAG instruction data based on any source corpus. Our approach leverages (1) five RAG paradigms, which encompass diverse query-document relationships, and (2) instruction simulation, which enhances instruction diversity and quality by utilizing the strengths of existing instruction datasets. Using this method, we construct a 40K instruction dataset from Wikipedia, comprehensively covering diverse RAG scenarios and tasks. Experiments demonstrate that RAG-Instruct effectively enhances LLMs' RAG capabilities, achieving strong zero-shot performance and significantly outperforming various RAG baselines across a diverse set of tasks. RAG-Instruct is publicly available at https://github.com/FreedomIntelligence/RAG-Instruct.

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arXiv2024

HuatuoGPT-o1, Towards Medical Complex Reasoning with LLMs

The breakthrough of OpenAI o1 highlights the potential of enhancing reasoning to improve LLM. Yet, most research in reasoning has focused on mathematical tasks, leaving domains like medicine underexplored. The medical domain, though distinct from mathematics, also demands robust reasoning to provide reliable answers, given the high standards of healthcare. However, verifying medical reasoning is challenging, unlike those in mathematics. To address this, we propose verifiable medical problems with a medical verifier to check the correctness of model outputs. This verifiable nature enables advancements in medical reasoning through a two-stage approach: (1) using the verifier to guide the search for a complex reasoning trajectory for fine-tuning LLMs, (2) applying reinforcement learning (RL) with verifier-based rewards to enhance complex reasoning further. Finally, we introduce HuatuoGPT-o1, a medical LLM capable of complex reasoning, which outperforms general and medical-specific baselines using only 40K verifiable problems. Experiments show complex reasoning improves medical problem-solving and benefits more from RL. We hope our approach inspires advancements in reasoning across medical and other specialized domains.

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arXiv2024

HuatuoGPT-Vision, Towards Injecting Medical Visual Knowledge into Multimodal LLMs at Scale

The rapid development of multimodal large language models (MLLMs), such as GPT-4V, has led to significant advancements. However, these models still face challenges in medical multimodal capabilities due to limitations in the quantity and quality of medical vision-text data, stemming from data privacy concerns and high annotation costs. While pioneering approaches utilize PubMed's large-scale, de-identified medical image-text pairs to address these limitations, they still fall short due to inherent data noise. To tackle this, we refined medical image-text pairs from PubMed and employed MLLMs (GPT-4V) in an 'unblinded' capacity to denoise and reformat the data, resulting in the creation of the PubMedVision dataset with 1.3 million medical VQA samples. Our validation demonstrates that: (1) PubMedVision can significantly enhance the medical multimodal capabilities of current MLLMs, showing significant improvement in benchmarks including the MMMU Health & Medicine track; (2) manual checks by medical experts and empirical results validate the superior data quality of our dataset compared to other data construction methods. Using PubMedVision, we train a 34B medical MLLM HuatuoGPT-Vision, which shows superior performance in medical multimodal scenarios among open-source MLLMs.

cs.CV↗

arXiv2024

HuatuoGPT-II, One-stage Training for Medical Adaption of LLMs

Adapting a language model into a specific domain, a.k.a `domain adaption', is a common practice when specialized knowledge, e.g. medicine, is not encapsulated in a general language model like Llama2. The challenge lies in the heterogeneity of data across the two training stages, as it varies in languages, genres, or formats. To tackle this and simplify the learning protocol, we propose to transform heterogeneous data, from the both pre-training and supervised stages, into a unified, simple input-output pair format. We validate the new protocol in the domains where proprietary LLMs like ChatGPT perform relatively poorly, such as Traditional Chinese Medicine. The developed model, HuatuoGPT-II, has shown state-of-the-art performance in Chinese medicine domain on a number of benchmarks, e.g. medical licensing exams. It even outperforms proprietary models like ChatGPT and GPT-4 in some aspects, especially in Traditional Chinese Medicine. Expert manual evaluations further validate HuatuoGPT-II's advantages over existing LLMs. Notably, HuatuoGPT-II was benchmarked in a fresh Chinese National Medical Licensing Examination where it achieved the best performance, showcasing not only its effectiveness but also its generalization capabilities.

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arXiv2024

CoD, Towards an Interpretable Medical Agent using Chain of Diagnosis

The field of medical diagnosis has undergone a significant transformation with the advent of large language models (LLMs), yet the challenges of interpretability within these models remain largely unaddressed. This study introduces Chain-of-Diagnosis (CoD) to enhance the interpretability of LLM-based medical diagnostics. CoD transforms the diagnostic process into a diagnostic chain that mirrors a physician's thought process, providing a transparent reasoning pathway. Additionally, CoD outputs the disease confidence distribution to ensure transparency in decision-making. This interpretability makes model diagnostics controllable and aids in identifying critical symptoms for inquiry through the entropy reduction of confidences. With CoD, we developed DiagnosisGPT, capable of diagnosing 9604 diseases. Experimental results demonstrate that DiagnosisGPT outperforms other LLMs on diagnostic benchmarks. Moreover, DiagnosisGPT provides interpretability while ensuring controllability in diagnostic rigor.

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arXiv2024

MLLM-Bench: Evaluating Multimodal LLMs with Per-sample Criteria

Multimodal large language models (MLLMs) have broadened the scope of AI applications. Existing automatic evaluation methodologies for MLLMs are mainly limited in evaluating queries without considering user experiences, inadequately addressing the nuances of creative and associative multimodal tasks. However, the open-ended and subjective nature of such tasks poses a significant challenge to the evaluation methodology, where it is difficult to define the ground-truth answers for them. To this end, in our paper, we propose a new evaluation paradigm for MLLMs, which is evaluating MLLMs with per-sample criteria using potent MLLM as the judge. To validate the feasibility and effectiveness of this paradigm, we design a benchmark, dubbed MLLM-Bench, by curating the evaluation samples across six comprehensive cognitive levels. We benchmark 21 popular MLLMs in a pairwise-comparison fashion, showing diverse performance across models. Moreover, the validity of our benchmark manifests itself in reaching 88.02% agreement with human evaluation. We contend that the proposed paradigm explores the potential of MLLMs as effective evaluation tools with the help of per-sample criteria. See online leaderboard at \url{https://mllm-bench.llmzoo.com}.

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arXiv2024

LLMs for Doctors: Leveraging Medical LLMs to Assist Doctors, Not Replace Them

The recent success of Large Language Models (LLMs) has had a significant impact on the healthcare field, providing patients with medical advice, diagnostic information, and more. However, due to a lack of professional medical knowledge, patients are easily misled by generated erroneous information from LLMs, which may result in serious medical problems. To address this issue, we focus on tuning the LLMs to be medical assistants who collaborate with more experienced doctors. We first conduct a two-stage survey by inspiration-feedback to gain a broad understanding of the real needs of doctors for medical assistants. Based on this, we construct a Chinese medical dataset called DoctorFLAN to support the entire workflow of doctors, which includes 92K Q\&A samples from 22 tasks and 27 specialists. Moreover, we evaluate LLMs in doctor-oriented scenarios by constructing the DoctorFLAN-\textit{test} containing 550 single-turn Q\&A and DotaBench containing 74 multi-turn conversations. The evaluation results indicate that being a medical assistant still poses challenges for existing open-source models, but DoctorFLAN can help them significantly. It demonstrates that the doctor-oriented dataset and benchmarks we construct can complement existing patient-oriented work and better promote medical LLMs research.

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arXiv2024

ALLaVA: Harnessing GPT4V-Synthesized Data for Lite Vision-Language Models

Large vision-language models (LVLMs) have shown premise in a broad range of vision-language tasks with their strong reasoning and generalization capabilities. However, they require considerable computational resources for training and deployment. This study aims to bridge the performance gap between traditional-scale LVLMs and resource-friendly lite versions by adopting high-quality training data. To this end, we propose a comprehensive pipeline for generating a synthetic dataset. The key idea is to leverage strong proprietary models to generate (i) fine-grained image annotations for vision-language alignment and (ii) complex reasoning visual question-answering pairs for visual instruction fine-tuning, yielding 1.3M samples in total. We train a series of lite VLMs on the synthetic dataset and experimental results demonstrate the effectiveness of the proposed scheme, where they achieve competitive performance on 17 benchmarks among 4B LVLMs, and even perform on par with 7B/13B-scale models on various benchmarks. This work highlights the feasibility of adopting high-quality data in crafting more efficient LVLMs. We name our dataset \textit{ALLaVA}, and open-source it to research community for developing better resource-efficient LVLMs for wider usage.

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arXiv2024

LLMs Could Autonomously Learn Without External Supervision

In the quest for super-human performance, Large Language Models (LLMs) have traditionally been tethered to human-annotated datasets and predefined training objectives-a process that is both labor-intensive and inherently limited. This paper presents a transformative approach: Autonomous Learning for LLMs, a self-sufficient learning paradigm that frees models from the constraints of human supervision. This method endows LLMs with the ability to self-educate through direct interaction with text, akin to a human reading and comprehending literature. Our approach eliminates the reliance on annotated data, fostering an Autonomous Learning environment where the model independently identifies and reinforces its knowledge gaps. Empirical results from our comprehensive experiments, which utilized a diverse array of learning materials and were evaluated against standard public quizzes, reveal that Autonomous Learning outstrips the performance of both Pre-training and Supervised Fine-Tuning (SFT), as well as retrieval-augmented methods. These findings underscore the potential of Autonomous Learning to not only enhance the efficiency and effectiveness of LLM training but also to pave the way for the development of more advanced, self-reliant AI systems.

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arXiv2024

AceGPT, Localizing Large Language Models in Arabic

This paper is devoted to the development of a localized Large Language Model (LLM) specifically for Arabic, a language imbued with unique cultural characteristics inadequately addressed by current mainstream models. Significant concerns emerge when addressing cultural sensitivity and local values. To address this, the paper proposes a comprehensive solution that includes further pre-training with Arabic texts, Supervised Fine-Tuning (SFT) utilizing native Arabic instructions, and GPT-4 responses in Arabic, alongside Reinforcement Learning with AI Feedback (RLAIF) employing a reward model attuned to local culture and values. The goal is to cultivate culturally cognizant and value-aligned Arabic LLMs capable of accommodating the diverse, application-specific needs of Arabic-speaking communities. Comprehensive evaluations reveal that the resulting model, dubbed `AceGPT', sets the state-of-the-art standard for open Arabic LLMs across various benchmarks. Codes, data, and models are in https://github.com/FreedomIntelligence/AceGPT.

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arXiv2023

Enhancing Open-Domain Table Question Answering via Syntax- and Structure-aware Dense Retrieval

Open-domain table question answering aims to provide answers to a question by retrieving and extracting information from a large collection of tables. Existing studies of open-domain table QA either directly adopt text retrieval methods or consider the table structure only in the encoding layer for table retrieval, which may cause syntactical and structural information loss during table scoring. To address this issue, we propose a syntax- and structure-aware retrieval method for the open-domain table QA task. It provides syntactical representations for the question and uses the structural header and value representations for the tables to avoid the loss of fine-grained syntactical and structural information. Then, a syntactical-to-structural aggregator is used to obtain the matching score between the question and a candidate table by mimicking the human retrieval process. Experimental results show that our method achieves the state-of-the-art on the NQ-tables dataset and overwhelms strong baselines on a newly curated open-domain Text-to-SQL dataset.

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arXiv2023

UP-DETR: Unsupervised Pre-training for Object Detection with Transformers

DEtection TRansformer (DETR) for object detection reaches competitive performance compared with Faster R-CNN via a transformer encoder-decoder architecture. However, trained with scratch transformers, DETR needs large-scale training data and an extreme long training schedule even on COCO dataset. Inspired by the great success of pre-training transformers in natural language processing, we propose a novel pretext task named random query patch detection in Unsupervised Pre-training DETR (UP-DETR). Specifically, we randomly crop patches from the given image and then feed them as queries to the decoder. The model is pre-trained to detect these query patches from the input image. During the pre-training, we address two critical issues: multi-task learning and multi-query localization. (1) To trade off classification and localization preferences in the pretext task, we find that freezing the CNN backbone is the prerequisite for the success of pre-training transformers. (2) To perform multi-query localization, we develop UP-DETR with multi-query patch detection with attention mask. Besides, UP-DETR also provides a unified perspective for fine-tuning object detection and one-shot detection tasks. In our experiments, UP-DETR significantly boosts the performance of DETR with faster convergence and higher average precision on object detection, one-shot detection and panoptic segmentation. Code and pre-training models: https://github.com/dddzg/up-detr.

cs.CV↗

arXiv2023

Spinal nerve segmentation method and dataset construction in endoscopic surgical scenarios

Endoscopic surgery is currently an important treatment method in the field of spinal surgery and avoiding damage to the spinal nerves through video guidance is a key challenge. This paper presents the first real-time segmentation method for spinal nerves in endoscopic surgery, which provides crucial navigational information for surgeons. A finely annotated segmentation dataset of approximately 10,000 consec-utive frames recorded during surgery is constructed for the first time for this field, addressing the problem of semantic segmentation. Based on this dataset, we propose FUnet (Frame-Unet), which achieves state-of-the-art performance by utilizing inter-frame information and self-attention mechanisms. We also conduct extended exper-iments on a similar polyp endoscopy video dataset and show that the model has good generalization ability with advantageous performance. The dataset and code of this work are presented at: https://github.com/zzzzzzpc/FUnet .

cs.CV↗

arXiv2023

HuatuoGPT, towards Taming Language Model to Be a Doctor

In this paper, we present HuatuoGPT, a large language model (LLM) for medical consultation. The core recipe of HuatuoGPT is to leverage both \textit{distilled data from ChatGPT} and \textit{real-world data from doctors} in the supervised fine-tuned stage. The responses of ChatGPT are usually detailed, well-presented and informative while it cannot perform like a doctor in many aspects, e.g. for integrative diagnosis. We argue that real-world data from doctors would be complementary to distilled data in the sense the former could tame a distilled language model to perform like doctors. To better leverage the strengths of both data, we train a reward model to align the language model with the merits that both data bring, following an RLAIF (reinforced learning from AI feedback) fashion. To evaluate and benchmark the models, we propose a comprehensive evaluation scheme (including automatic and manual metrics). Experimental results demonstrate that HuatuoGPT achieves state-of-the-art results in performing medical consultation among open-source LLMs in GPT-4 evaluation, human evaluation, and medical benchmark datasets. It is worth noting that by using additional real-world data and RLAIF, the distilled language model (i.e., HuatuoGPT) outperforms its teacher model ChatGPT in most cases. Our code, data, and models are publicly available at \url{https://github.com/FreedomIntelligence/HuatuoGPT}. The online demo is available at \url{https://www.HuatuoGPT.cn/}.

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arXiv2023

Phoenix: Democratizing ChatGPT across Languages

This paper presents our efforts to democratize ChatGPT across language. We release a large language model "Phoenix", achieving competitive performance among open-source English and Chinese models while excelling in languages with limited resources (covering both Latin and non-Latin languages). We believe this work will be beneficial to make ChatGPT more accessible, especially in countries where people cannot use ChatGPT due to restrictions from OpenAI or local goverments. Our data, code, and models are available at https://github.com/FreedomIntelligence/LLMZoo.

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arXiv2022

SeDR: Segment Representation Learning for Long Documents Dense Retrieval

Recently, Dense Retrieval (DR) has become a promising solution to document retrieval, where document representations are used to perform effective and efficient semantic search. However, DR remains challenging on long documents, due to the quadratic complexity of its Transformer-based encoder and the finite capacity of a low-dimension embedding. Current DR models use suboptimal strategies such as truncating or splitting-and-pooling to long documents leading to poor utilization of whole document information. In this work, to tackle this problem, we propose Segment representation learning for long documents Dense Retrieval (SeDR). In SeDR, Segment-Interaction Transformer is proposed to encode long documents into document-aware and segment-sensitive representations, while it holds the complexity of splitting-and-pooling and outperforms other segment-interaction patterns on DR. Since GPU memory requirements for long document encoding causes insufficient negatives for DR training, Late-Cache Negative is further proposed to provide additional cache negatives for optimizing representation learning. Experiments on MS MARCO and TREC-DL datasets show that SeDR achieves superior performance among DR models, and confirm the effectiveness of SeDR on long document retrieval.

cs.IR↗

arXiv2022

Transition behavior of the seizure dynamics modulated by the astrocyte inositol triphosphate noise

Epilepsy is a neurological disorder with recurrent seizures of complexity and randomness. Until now, the mechanism of epileptic randomness has not been fully elucidated. Inspired by the recent finding that astrocyte GTPase-activating protein (G-protein)-coupled receptors could be involved in stochastic epileptic seizures, we proposed a neuron-astrocyte network model, incorporating the noise of the astrocytic second messager, inositol triphosphate (IP3) which is modulated by the G-protein)-coupled receptor activation. Based on this model, we have statistically analysed the transitions of epileptic seizures by performing tens of simulation trials. Our simulation results show that the increase of the IP3 noise intensity induces the depolarization-block epileptic seizures together with an increase in neuronal firing frequency. Meanwhile, a bistable state of neuronal firing emerges under certain noise intensity, during which the neuronal firing pattern switches between regular sparse spiking and epileptic seizure states. This random presence of epileptic seizures is absent when the noise intensity continues to increase, accompanying with an increase in the epileptic depolarization block duration. The simulation results also shed light on the fact that calcium signals in astrocytes play significant roles in the pattern formations of the epileptic seizure. Our results provide a potential pathway for understanding the epileptic randomness.

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