arXiv subjects

Kenji Fukumizu

Publications and source records attributed to Kenji Fukumizu.

At least 37 records · Page 2Linked to original sources

arXiv2024

Out-of-Distribution Optimality of Invariant Risk Minimization

Deep Neural Networks often inherit spurious correlations embedded in training data and hence may fail to generalize to unseen domains, which have different distributions from the domain to provide training data. M. Arjovsky et al. (2019) introduced the concept out-of-distribution (o.o.d.) risk, which is the maximum risk among all domains, and formulated the issue caused by spurious correlations as a minimization problem of the o.o.d. risk. Invariant Risk Minimization (IRM) is considered to be a promising approach to minimize the o.o.d. risk: IRM estimates a minimum of the o.o.d. risk by solving a bi-level optimization problem. While IRM has attracted considerable attention with empirical success, it comes with few theoretical guarantees. Especially, a solid theoretical guarantee that the bi-level optimization problem gives the minimum of the o.o.d. risk has not yet been established. Aiming at providing a theoretical justification for IRM, this paper rigorously proves that a solution to the bi-level optimization problem minimizes the o.o.d. risk under certain conditions. The result also provides sufficient conditions on distributions providing training data and on a dimension of feature space for the bi-leveled optimization problem to minimize the o.o.d. risk.

stat.ML↗

arXiv2024

Flow matching achieves almost minimax optimal convergence

Flow matching (FM) has gained significant attention as a simulation-free generative model. Unlike diffusion models, which are based on stochastic differential equations, FM employs a simpler approach by solving an ordinary differential equation with an initial condition from a normal distribution, thus streamlining the sample generation process. This paper discusses the convergence properties of FM for large sample size under the $p$-Wasserstein distance, a measure of distributional discrepancy. We establish that FM can achieve an almost minimax optimal convergence rate for $1 \leq p \leq 2$, presenting the first theoretical evidence that FM can reach convergence rates comparable to those of diffusion models. Our analysis extends existing frameworks by examining a broader class of mean and variance functions for the vector fields and identifies specific conditions necessary to attain almost optimal rates.

cs.LG↗

arXiv2024

Scaling Law of Sim2Real Transfer Learning in Expanding Computational Materials Databases for Real-World Predictions

To address the challenge of limited experimental materials data, extensive physical property databases are being developed based on high-throughput computational experiments, such as molecular dynamics simulations. Previous studies have shown that fine-tuning a predictor pretrained on a computational database to a real system can result in models with outstanding generalization capabilities compared to learning from scratch. This study demonstrates the scaling law of simulation-to-real (Sim2Real) transfer learning for several machine learning tasks in materials science. Case studies of three prediction tasks for polymers and inorganic materials reveal that the prediction error on real systems decreases according to a power-law as the size of the computational data increases. Observing the scaling behavior offers various insights for database development, such as determining the sample size necessary to achieve a desired performance, identifying equivalent sample sizes for physical and computational experiments, and guiding the design of data production protocols for downstream real-world tasks.

cond-mat.mtrl-sci↗

arXiv2024

Procedure to Reveal the Mechanism of Pattern Formation Process by Topological Data Analysis

Topological data analysis (TDA) is a versatile tool that can be used to extract scientific knowledge from complex pattern formation processes. However, the physics correspondence between the features obtained from TDA and pattern dynamics does not agree one-to-one, and the physical interpretation of the TDA features needs to be set appropriately according to the phenomenon to be analyzed. In this study, we propose an analytical procedure to physically interpret pattern dynamics through TDA and machine learning techniques. The proposed procedure was applied to the process of magnetic domain pattern formation to quantify non-trivial domain pattern classifications and reveal the nature of the underlying dynamics. On the basis of these findings, we also propose a candidate reduction model to understand the nature of magnetic domain formation.

nlin.PS↗

arXiv2024

Extended Flow Matching: a Method of Conditional Generation with Generalized Continuity Equation

The task of conditional generation is one of the most important applications of generative models, and numerous methods have been developed to date based on the celebrated flow-based models. However, many flow-based models in use today are not built to allow one to introduce an explicit inductive bias to how the conditional distribution to be generated changes with respect to conditions. This can result in unexpected behavior in the task of style transfer, for example. In this research, we introduce extended flow matching (EFM), a direct extension of flow matching that learns a "matrix field" corresponding to the continuous map from the space of conditions to the space of distributions. We show that we can introduce inductive bias to the conditional generation through the matrix field and demonstrate this fact with MMOT-EFM, a version of EFM that aims to minimize the Dirichlet energy or the sensitivity of the distribution with respect to conditions. We will present our theory along with experimental results that support the competitiveness of EFM in conditional generation.

cs.LG↗

arXiv2024

Generalized Sobolev Transport for Probability Measures on a Graph

We study the optimal transport (OT) problem for measures supported on a graph metric space. Recently, Le et al. (2022) leverage the graph structure and propose a variant of OT, namely Sobolev transport (ST), which yields a closed-form expression for a fast computation. However, ST is essentially coupled with the $L^p$ geometric structure within its definition which makes it nontrivial to utilize ST for other prior structures. In contrast, the classic OT has the flexibility to adapt to various geometric structures by modifying the underlying cost function. An important instance is the Orlicz-Wasserstein (OW) which moves beyond the $L^p$ structure by leveraging the \emph{Orlicz geometric structure}. Comparing to the usage of standard $p$-order Wasserstein, OW remarkably helps to advance certain machine learning approaches. Nevertheless, OW brings up a new challenge on its computation due to its two-level optimization formulation. In this work, we leverage a specific class of convex functions for Orlicz structure to propose the generalized Sobolev transport (GST). GST encompasses the ST as its special case, and can be utilized for prior structures beyond the $L^p$ geometry. In connection with the OW, we show that one only needs to simply solve a univariate optimization problem to compute the GST, unlike the complex two-level optimization problem in OW. We empirically illustrate that GST is several-order faster than the OW. Moreover, we provide preliminary evidences on the advantages of GST for document classification and for several tasks in topological data analysis.

stat.ML↗

arXiv2024

State-Separated SARSA: A Practical Sequential Decision-Making Algorithm with Recovering Rewards

While many multi-armed bandit algorithms assume that rewards for all arms are constant across rounds, this assumption does not hold in many real-world scenarios. This paper considers the setting of recovering bandits (Pike-Burke & Grunewalder, 2019), where the reward depends on the number of rounds elapsed since the last time an arm was pulled. We propose a new reinforcement learning (RL) algorithm tailored to this setting, named the State-Separate SARSA (SS-SARSA) algorithm, which treats rounds as states. The SS-SARSA algorithm achieves efficient learning by reducing the number of state combinations required for Q-learning/SARSA, which often suffers from combinatorial issues for large-scale RL problems. Additionally, it makes minimal assumptions about the reward structure and offers lower computational complexity. Furthermore, we prove asymptotic convergence to an optimal policy under mild assumptions. Simulation studies demonstrate the superior performance of our algorithm across various settings.

cs.LG↗

arXiv2024

Neural-Kernel Conditional Mean Embeddings

Kernel conditional mean embeddings (CMEs) offer a powerful framework for representing conditional distribution, but they often face scalability and expressiveness challenges. In this work, we propose a new method that effectively combines the strengths of deep learning with CMEs in order to address these challenges. Specifically, our approach leverages the end-to-end neural network (NN) optimization framework using a kernel-based objective. This design circumvents the computationally expensive Gram matrix inversion required by current CME methods. To further enhance performance, we provide efficient strategies to optimize the remaining kernel hyperparameters. In conditional density estimation tasks, our NN-CME hybrid achieves competitive performance and often surpasses existing deep learning-based methods. Lastly, we showcase its remarkable versatility by seamlessly integrating it into reinforcement learning (RL) contexts. Building on Q-learning, our approach naturally leads to a new variant of distributional RL methods, which demonstrates consistent effectiveness across different environments.

stat.ML↗

arXiv2024

Optimal Transport for Measures with Noisy Tree Metric

We study optimal transport (OT) problem for probability measures supported on a tree metric space. It is known that such OT problem (i.e., tree-Wasserstein (TW)) admits a closed-form expression, but depends fundamentally on the underlying tree structure over supports of input measures. In practice, the given tree structure may be, however, perturbed due to noisy or adversarial measurements. To mitigate this issue, we follow the max-min robust OT approach which considers the maximal possible distances between two input measures over an uncertainty set of tree metrics. In general, this approach is hard to compute, even for measures supported in one-dimensional space, due to its non-convexity and non-smoothness which hinders its practical applications, especially for large-scale settings. In this work, we propose novel uncertainty sets of tree metrics from the lens of edge deletion/addition which covers a diversity of tree structures in an elegant framework. Consequently, by building upon the proposed uncertainty sets, and leveraging the tree structure over supports, we show that the robust OT also admits a closed-form expression for a fast computation as its counterpart standard OT (i.e., TW). Furthermore, we demonstrate that the robust OT satisfies the metric property and is negative definite. We then exploit its negative definiteness to propose positive definite kernels and test them in several simulations on various real-world datasets on document classification and topological data analysis.

stat.ML↗

arXiv2024

On the Limits of Topological Data Analysis for Statistical Inference

Topological data analysis has emerged as a powerful tool for extracting the metric, geometric and topological features underlying the data as a multi-resolution summary statistic, and has found applications in several areas where data arises from complex sources. In this paper, we examine the use of topological summary statistics through the lens of statistical inference. We investigate necessary and sufficient conditions under which \textit{valid statistical inference} is possible using {topological summary statistics}. Additionally, we provide examples of models that demonstrate invariance with respect to topological summaries.

math.PR↗

arXiv2024

Neural Fourier Transform: A General Approach to Equivariant Representation Learning

Symmetry learning has proven to be an effective approach for extracting the hidden structure of data, with the concept of equivariance relation playing the central role. However, most of the current studies are built on architectural theory and corresponding assumptions on the form of data. We propose Neural Fourier Transform (NFT), a general framework of learning the latent linear action of the group without assuming explicit knowledge of how the group acts on data. We present the theoretical foundations of NFT and show that the existence of a linear equivariant feature, which has been assumed ubiquitously in equivariance learning, is equivalent to the existence of a group invariant kernel on the dataspace. We also provide experimental results to demonstrate the application of NFT in typical scenarios with varying levels of knowledge about the acting group.

stat.ML↗

arXiv2024

Controlling Posterior Collapse by an Inverse Lipschitz Constraint on the Decoder Network

Variational autoencoders (VAEs) are one of the deep generative models that have experienced enormous success over the past decades. However, in practice, they suffer from a problem called posterior collapse, which occurs when the encoder coincides, or collapses, with the prior taking no information from the latent structure of the input data into consideration. In this work, we introduce an inverse Lipschitz neural network into the decoder and, based on this architecture, provide a new method that can control in a simple and clear manner the degree of posterior collapse for a wide range of VAE models equipped with a concrete theoretical guarantee. We also illustrate the effectiveness of our method through several numerical experiments.

cs.LG↗

arXiv2024

Transfer learning with affine model transformation

Supervised transfer learning has received considerable attention due to its potential to boost the predictive power of machine learning in scenarios where data are scarce. Generally, a given set of source models and a dataset from a target domain are used to adapt the pre-trained models to a target domain by statistically learning domain shift and domain-specific factors. While such procedurally and intuitively plausible methods have achieved great success in a wide range of real-world applications, the lack of a theoretical basis hinders further methodological development. This paper presents a general class of transfer learning regression called affine model transfer, following the principle of expected-square loss minimization. It is shown that the affine model transfer broadly encompasses various existing methods, including the most common procedure based on neural feature extractors. Furthermore, the current paper clarifies theoretical properties of the affine model transfer such as generalization error and excess risk. Through several case studies, we demonstrate the practical benefits of modeling and estimating inter-domain commonality and domain-specific factors separately with the affine-type transfer models.

stat.ML↗

arXiv2023

A Kernel Stein Test for Comparing Latent Variable Models

We propose a kernel-based nonparametric test of relative goodness of fit, where the goal is to compare two models, both of which may have unobserved latent variables, such that the marginal distribution of the observed variables is intractable. The proposed test generalizes the recently proposed kernel Stein discrepancy (KSD) tests (Liu et al., 2016, Chwialkowski et al., 2016, Yang et al., 2018) to the case of latent variable models, a much more general class than the fully observed models treated previously. The new test, with a properly calibrated threshold, has a well-controlled type-I error. In the case of certain models with low-dimensional latent structure and high-dimensional observations, our test significantly outperforms the relative Maximum Mean Discrepancy test, which is based on samples from the models and does not exploit the latent structure.

stat.ML↗

arXiv2023

Scalable Unbalanced Sobolev Transport for Measures on a Graph

Optimal transport (OT) is a popular and powerful tool for comparing probability measures. However, OT suffers a few drawbacks: (i) input measures required to have the same mass, (ii) a high computational complexity, and (iii) indefiniteness which limits its applications on kernel-dependent algorithmic approaches. To tackle issues (ii)--(iii), Le et al. (2022) recently proposed Sobolev transport for measures on a graph having the same total mass by leveraging the graph structure over supports. In this work, we consider measures that may have different total mass and are supported on a graph metric space. To alleviate the disadvantages (i)--(iii) of OT, we propose a novel and scalable approach to extend Sobolev transport for this unbalanced setting where measures may have different total mass. We show that the proposed unbalanced Sobolev transport (UST) admits a closed-form formula for fast computation, and it is also negative definite. Additionally, we derive geometric structures for the UST and establish relations between our UST and other transport distances. We further exploit the negative definiteness to design positive definite kernels and evaluate them on various simulations to illustrate their fast computation and comparable performances against other transport baselines for unbalanced measures on a graph.

cs.LG↗

arXiv2022

Invariance-adapted decomposition and Lasso-type contrastive learning

Recent years have witnessed the effectiveness of contrastive learning in obtaining the representation of dataset that is useful in interpretation and downstream tasks. However, the mechanism that describes this effectiveness have not been thoroughly analyzed, and many studies have been conducted to investigate the data structures captured by contrastive learning. In particular, the recent study of \citet{content_isolate} has shown that contrastive learning is capable of decomposing the data space into the space that is invariant to all augmentations and its complement. In this paper, we introduce the notion of invariance-adapted latent space that decomposes the data space into the intersections of the invariant spaces of each augmentation and their complements. This decomposition generalizes the one introduced in \citet{content_isolate}, and describes a structure that is analogous to the frequencies in the harmonic analysis of a group. We experimentally show that contrastive learning with lasso-type metric can be used to find an invariance-adapted latent space, thereby suggesting a new potential for the contrastive learning. We also investigate when such a latent space can be identified up to mixings within each component.

stat.ML↗

arXiv2022

Unsupervised Learning of Equivariant Structure from Sequences

In this study, we present meta-sequential prediction (MSP), an unsupervised framework to learn the symmetry from the time sequence of length at least three. Our method leverages the stationary property (e.g. constant velocity, constant acceleration) of the time sequence to learn the underlying equivariant structure of the dataset by simply training the encoder-decoder model to be able to predict the future observations. We will demonstrate that, with our framework, the hidden disentangled structure of the dataset naturally emerges as a by-product by applying simultaneous block-diagonalization to the transition operators in the latent space, the procedure which is commonly used in representation theory to decompose the feature-space based on the type of response to group actions. We will showcase our method from both empirical and theoretical perspectives. Our result suggests that finding a simple structured relation and learning a model with extrapolation capability are two sides of the same coin. The code is available at https://github.com/takerum/meta_sequential_prediction.

cs.LG↗

arXiv2022

Robust Persistence Diagrams using Reproducing Kernels

Persistent homology has become an important tool for extracting geometric and topological features from data, whose multi-scale features are summarized in a persistence diagram. From a statistical perspective, however, persistence diagrams are very sensitive to perturbations in the input space. In this work, we develop a framework for constructing robust persistence diagrams from superlevel filtrations of robust density estimators constructed using reproducing kernels. Using an analogue of the influence function on the space of persistence diagrams, we establish the proposed framework to be less sensitive to outliers. The robust persistence diagrams are shown to be consistent estimators in bottleneck distance, with the convergence rate controlled by the smoothness of the kernel. This, in turn, allows us to construct uniform confidence bands in the space of persistence diagrams. Finally, we demonstrate the superiority of the proposed approach on benchmark datasets.

math.ST↗