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Kimon Fountoulakis

Publications and source records attributed to Kimon Fountoulakis.

At least 37 records · Page 2Linked to original sources

$p$-Norm Flow Diffusion for Local Graph Clustering

Local graph clustering and the closely related seed set expansion problem are primitives on graphs that are central to a wide range of analytic and learning tasks such as local clustering, community detection, nodes ranking and feature inference. Prior work on local graph clustering mostly falls into two categories with numerical and combinatorial roots respectively. In this work, we draw inspiration from both fields and propose a family of convex optimization formulations based on the idea of diffusion with p-norm network flow for $p\in (1,\infty)$. In the context of local clustering, we characterize the optimal solutions for these optimization problems and show their usefulness in finding low conductance cuts around input seed set. In particular, we achieve quadratic approximation of conductance in the case of $p=2$ similar to the Cheeger-type bounds of spectral methods, constant factor approximation when $p\rightarrow\infty$ similar to max-flow based methods, and a smooth transition for general $p$ values in between. Thus, our optimization formulation can be viewed as bridging the numerical and combinatorial approaches, and we can achieve the best of both worlds in terms of speed and noise robustness. We show that the proposed problem can be solved in strongly local running time for $p\ge 2$ and conduct empirical evaluations on both synthetic and real-world graphs to illustrate our approach compares favorably with existing methods.

cs.LG↗

Statistical guarantees for local graph clustering

Local graph clustering methods aim to find small clusters in very large graphs. These methods take as input a graph and a seed node, and they return as output a good cluster in a running time that depends on the size of the output cluster but that is independent of the size of the input graph. In this paper, we adopt a statistical perspective on local graph clustering, and we analyze the performance of the l1-regularized PageRank method~(Fountoulakis et. al.) for the recovery of a single target cluster, given a seed node inside the cluster. Assuming the target cluster has been generated by a random model, we present two results. In the first, we show that the optimal support of l1-regularized PageRank recovers the full target cluster, with bounded false positives. In the second, we show that if the seed node is connected solely to the target cluster then the optimal support of l1-regularized PageRank recovers exactly the target cluster. We also show empirically that l1-regularized PageRank has a state-of-the-art performance on many real graphs, demonstrating the superiority of the method. From a computational perspective, we show that the solution path of l1-regularized PageRank is monotonic. This allows for the application of the forward stagewise algorithm, which approximates the solution path in running time that does not depend on the size of the whole graph. Finally, we show that l1-regularized PageRank and approximate personalized PageRank (APPR), another very popular method for local graph clustering, are equivalent in the sense that we can lower and upper bound the output of one with the output of the other. Based on this relation, we establish for APPR similar results to those we establish for l1-regularized PageRank.

cs.LG↗

Parallel Local Graph Clustering

Graph clustering has many important applications in computing, but due to growing sizes of graphs, even traditionally fast clustering methods such as spectral partitioning can be computationally expensive for real-world graphs of interest. Motivated partly by this, so-called local algorithms for graph clustering have received significant interest due to the fact that they can find good clusters in a graph with work proportional to the size of the cluster rather than that of the entire graph. This feature has proven to be crucial in making such graph clustering and many of its downstream applications efficient in practice. While local clustering algorithms are already faster than traditional algorithms that touch the entire graph, they are sequential and there is an opportunity to make them even more efficient via parallelization. In this paper, we show how to parallelize many of these algorithms in the shared-memory multicore setting, and we analyze the parallel complexity of these algorithms. We present comprehensive experiments on large-scale graphs showing that our parallel algorithms achieve good parallel speedups on a modern multicore machine, thus significantly speeding up the analysis of local graph clusters in the very large-scale setting.

cs.DC↗

A Short Introduction to Local Graph Clustering Methods and Software

Graph clustering has many important applications in computing, but due to the increasing sizes of graphs, even traditionally fast clustering methods can be computationally expensive for real-world graphs of interest. Scalability problems led to the development of local graph clustering algorithms that come with a variety of theoretical guarantees. Rather than return a global clustering of the entire graph, local clustering algorithms return a single cluster around a given seed node or set of seed nodes. These algorithms improve scalability because they use time and memory resources that depend only on the size of the cluster returned, instead of the size of the input graph. Indeed, for many of them, their running time grows linearly with the size of the output. In addition to scalability arguments, local graph clustering algorithms have proven to be very useful for identifying and interpreting small-scale and meso-scale structure in large-scale graphs. As opposed to heuristic operational procedures, this class of algorithms comes with strong algorithmic and statistical theory. These include statistical guarantees that prove they have implicit regularization properties. One of the challenges with the existing literature on these approaches is that they are published in a wide variety of areas, including theoretical computer science, statistics, data science, and mathematics. This has made it difficult to relate the various algorithms and ideas together into a cohesive whole. We have recently been working on unifying these diverse perspectives through the lens of optimization as well as providing software to perform these computations in a cohesive fashion. In this note, we provide a brief introduction to local graph clustering, we provide some representative examples of our perspective, and we introduce our software named Local Graph Clustering (LGC).

cs.SI↗

Capacity Releasing Diffusion for Speed and Locality

Diffusions and related random walk procedures are of central importance in many areas of machine learning, data analysis, and applied mathematics. Because they spread mass agnostically at each step in an iterative manner, they can sometimes spread mass "too aggressively," thereby failing to find the "right" clusters. We introduce a novel Capacity Releasing Diffusion (CRD) Process, which is both faster and stays more local than the classical spectral diffusion process. As an application, we use our CRD Process to develop an improved local algorithm for graph clustering. Our local graph clustering method can find local clusters in a model of clustering where one begins the CRD Process in a cluster whose vertices are connected better internally than externally by an $O(\log^2 n)$ factor, where $n$ is the number of nodes in the cluster. Thus, our CRD Process is the first local graph clustering algorithm that is not subject to the well-known quadratic Cheeger barrier. Our result requires a certain smoothness condition, which we expect to be an artifact of our analysis. Our empirical evaluation demonstrates improved results, in particular for realistic social graphs where there are moderately good---but not very good---clusters.

cs.DS↗

A Flexible Coordinate Descent Method

We present a novel randomized block coordinate descent method for the minimization of a convex composite objective function. The method uses (approximate) partial second-order (curvature) information, so that the algorithm performance is more robust when applied to highly nonseparable or ill conditioned problems. We call the method Flexible Coordinate Descent (FCD). At each iteration of FCD, a block of coordinates is sampled randomly, a quadratic model is formed about that block and the model is minimized \emph{approximately/inexactly} to determine the search direction. An inexpensive line search is then employed to ensure a monotonic decrease in the objective function and acceptance of large step sizes. We present several high probability iteration complexity results to show that convergence of FCD is guaranteed theoretically. Finally, we present numerical results on large-scale problems to demonstrate the practical performance of the method.

math.OC↗

Avoiding Synchronization in First-Order Methods for Sparse Convex Optimization

Parallel computing has played an important role in speeding up convex optimization methods for big data analytics and large-scale machine learning (ML). However, the scalability of these optimization methods is inhibited by the cost of communicating and synchronizing processors in a parallel setting. Iterative ML methods are particularly sensitive to communication cost since they often require communication every iteration. In this work, we extend well-known techniques from Communication-Avoiding Krylov subspace methods to first-order, block coordinate descent methods for Support Vector Machines and Proximal Least-Squares problems. Our Synchronization-Avoiding (SA) variants reduce the latency cost by a tunable factor of $s$ at the expense of a factor of $s$ increase in flops and bandwidth costs. We show that the SA-variants are numerically stable and can attain large speedups of up to $5.1\times$ on a Cray XC30 supercomputer.

cs.DC↗

Variational Perspective on Local Graph Clustering

Modern graph clustering applications require the analysis of large graphs and this can be computationally expensive. In this regard, local spectral graph clustering methods aim to identify well-connected clusters around a given "seed set" of reference nodes without accessing the entire graph. The celebrated Approximate Personalized PageRank (APPR) algorithm in the seminal paper by Andersen et al. is one such method. APPR was introduced and motivated purely from an algorithmic perspective. In other words, there is no a priori notion of objective function/optimality conditions that characterizes the steps taken by APPR. Here, we derive a novel variational formulation which makes explicit the actual optimization problem solved by APPR. In doing so, we draw connections between the local spectral algorithm of and an iterative shrinkage-thresholding algorithm (ISTA). In particular, we show that, appropriately initialized ISTA applied to our variational formulation can recover the sought-after local cluster in a time that only depends on the number of non-zeros of the optimal solution instead of the entire graph. In the process, we show that an optimization algorithm which apparently requires accessing the entire graph, can be made to behave in a completely local manner by accessing only a small number of nodes. This viewpoint builds a bridge across two seemingly disjoint fields of graph processing and numerical optimization, and it allows one to leverage well-studied, numerically robust, and efficient optimization algorithms for processing today's large graphs.

math.OC↗

Social Discrete Choice Models

Human decision making underlies data generating process in multiple application areas, and models explaining and predicting choices made by individuals are in high demand. Discrete choice models are widely studied in economics and computational social sciences. As digital social networking facilitates information flow and spread of influence between individuals, new advances in modeling are needed to incorporate social information into these models in addition to characteristic features affecting individual choices. In this paper, we propose two novel models with scalable training algorithms: local logistics graph regularization (LLGR) and latent class graph regularization (LCGR) models. We add social regularization to represent similarity between friends, and we introduce latent classes to account for possible preference discrepancies between different social groups. Training of the LLGR model is performed using alternating direction method of multipliers (ADMM), and training of the LCGR model is performed using a specialized Monte Carlo expectation maximization (MCEM) algorithm. Scalability to large graphs is achieved by parallelizing computation in both the expectation and the maximization steps. The LCGR model is the first latent class classification model that incorporates social relationships among individuals represented by a given graph. To evaluate our two models, we consider three classes of data to illustrate a typical large-scale use case in internet and social media applications. We experiment on synthetic datasets to empirically explain when the proposed model is better than vanilla classification models that do not exploit graph structure. We also experiment on real-world data, including both small scale and large scale real-world datasets, to demonstrate on which types of datasets our model can be expected to outperform state-of-the-art models.

cs.SI↗

LASAGNE: Locality And Structure Aware Graph Node Embedding

In this work we propose Lasagne, a methodology to learn locality and structure aware graph node embeddings in an unsupervised way. In particular, we show that the performance of existing random-walk based approaches depends strongly on the structural properties of the graph, e.g., the size of the graph, whether the graph has a flat or upward-sloping Network Community Profile (NCP), whether the graph is expander-like, whether the classes of interest are more k-core-like or more peripheral, etc. For larger graphs with flat NCPs that are strongly expander-like, existing methods lead to random walks that expand rapidly, touching many dissimilar nodes, thereby leading to lower-quality vector representations that are less useful for downstream tasks. Rather than relying on global random walks or neighbors within fixed hop distances, Lasagne exploits strongly local Approximate Personalized PageRank stationary distributions to more precisely engineer local information into node embeddings. This leads, in particular, to more meaningful and more useful vector representations of nodes in poorly-structured graphs. We show that Lasagne leads to significant improvement in downstream multi-label classification for larger graphs with flat NCPs, that it is comparable for smaller graphs with upward-sloping NCPs, and that is comparable to existing methods for link prediction tasks.

cs.SI↗

Avoiding communication in primal and dual block coordinate descent methods

Primal and dual block coordinate descent methods are iterative methods for solving regularized and unregularized optimization problems. Distributed-memory parallel implementations of these methods have become popular in analyzing large machine learning datasets. However, existing implementations communicate at every iteration which, on modern data center and supercomputing architectures, often dominates the cost of floating-point computation. Recent results on communication-avoiding Krylov subspace methods suggest that large speedups are possible by re-organizing iterative algorithms to avoid communication. We show how applying similar algorithmic transformations can lead to primal and dual block coordinate descent methods that only communicate every $s$ iterations--where $s$ is a tuning parameter--instead of every iteration for the \textit{regularized least-squares problem}. We show that the communication-avoiding variants reduce the number of synchronizations by a factor of $s$ on distributed-memory parallel machines without altering the convergence rate and attains strong scaling speedups of up to $6.1\times$ on a Cray XC30 supercomputer.

cs.DC↗

An optimization approach to locally-biased graph algorithms

Locally-biased graph algorithms are algorithms that attempt to find local or small-scale structure in a large data graph. In some cases, this can be accomplished by adding some sort of locality constraint and calling a traditional graph algorithm; but more interesting are locally-biased graph algorithms that compute answers by running a procedure that does not even look at most of the input graph. This corresponds more closely to what practitioners from various data science domains do, but it does not correspond well with the way that algorithmic and statistical theory is typically formulated. Recent work from several research communities has focused on developing locally-biased graph algorithms that come with strong complementary algorithmic and statistical theory and that are useful in practice in downstream data science applications. We provide a review and overview of this work, highlighting commonalities between seemingly-different approaches, and highlighting promising directions for future work.

cs.SI↗

A Randomized Rounding Algorithm for Sparse PCA

We present and analyze a simple, two-step algorithm to approximate the optimal solution of the sparse PCA problem. Our approach first solves a L1 penalized version of the NP-hard sparse PCA optimization problem and then uses a randomized rounding strategy to sparsify the resulting dense solution. Our main theoretical result guarantees an additive error approximation and provides a tradeoff between sparsity and accuracy. Our experimental evaluation indicates that our approach is competitive in practice, even compared to state-of-the-art toolboxes such as Spasm.

cs.DS↗

Performance of First- and Second-Order Methods for L1-Regularized Least Squares Problems

We study the performance of first- and second-order optimization methods for l1-regularized sparse least-squares problems as the conditioning of the problem changes and the dimensions of the problem increase up to one trillion. A rigorously defined generator is presented which allows control of the dimensions, the conditioning and the sparsity of the problem. The generator has very low memory requirements and scales well with the dimensions of the problem.

math.OC↗

A Preconditioner for a Primal-Dual Newton Conjugate Gradients Method for Compressed Sensing Problems

In this paper we are concerned with the solution of Compressed Sensing (CS) problems where the signals to be recovered are sparse in coherent and redundant dictionaries. We extend a primal-dual Newton Conjugate Gradients (pdNCG) method for CS problems. We provide an inexpensive and provably effective preconditioning technique for linear systems using pdNCG. Numerical results are presented on CS problems which demonstrate the performance of pdNCG with the proposed preconditioner compared to state-of-the-art existing solvers.

math.OC↗

Robust Block Coordinate Descent

In this paper we present a novel randomized block coordinate descent method for the minimization of a convex composite objective function. The method uses (approximate) partial second-order (curvature) information, so that the algorithm performance is more robust when applied to highly nonseparable or ill conditioned problems. We call the method Robust Coordinate Descent (RCD). At each iteration of RCD, a block of coordinates is sampled randomly, a quadratic model is formed about that block and the model is minimized approximately/inexactly to determine the search direction. An inexpensive line search is then employed to ensure a monotonic decrease in the objective function and acceptance of large step sizes. We prove global convergence of the RCD algorithm, and we also present several results on the local convergence of RCD for strongly convex functions. Finally, we present numerical results on large-scale problems to demonstrate the practical performance of the method.

math.OC↗

A Second-Order Method for Strongly Convex L1-Regularization Problems

In this paper a robust second-order method is developed for the solution of strongly convex l1-regularized problems. The main aim is to make the proposed method as inexpensive as possible, while even difficult problems can be efficiently solved. The proposed approach is a primal-dual Newton Conjugate Gradients (pdNCG) method. Convergence properties of pdNCG are studied and worst-case iteration complexity is established. Numerical results are presented on synthetic sparse least-squares problems and real world machine learning problems.

math.OC↗

A Second-Order Method for Compressed Sensing Problems with Coherent and Redundant Dictionaries

In this paper we are interested in the solution of Compressed Sensing (CS) problems where the signals to be recovered are sparse in coherent and redundant dictionaries. CS problems of this type are convex with non-smooth and non-separable regularization term, therefore a specialized solver is required. We propose a primal-dual Newton Conjugate Gradients (pdNCG) method. We prove global convergence and fast local rate of convergence for pdNCG. Moreover, well-known properties of CS problems are exploited for the development of provably effective preconditioning techniques that speed-up the approximate solution of linear systems which arise. Numerical results are presented on CS problems which demonstrate the performance of pdNCG compared to a state-of-the-art existing solver.

math.OC↗