arXiv subjects

Konark Bisht

Publications and source records attributed to Konark Bisht.

4 recordsLinked to original sources

arXiv2020

Rectification of Twitching bacteria through narrow channels: A numerical simulations study

Bacteria living on surfaces use different types of motility mechanisms to move on the surface in search of food or to form micro-colonies. Twitching is one such form of motility employed by bacteria such as N. gonorrhoeae, in which the polymeric extensions known as type IV pili mediate its movement. Pili extending from cell body adheres to the surface and pulls the bacteria by retraction. The bacterial movement is decided by the two-dimensional tug-of-war between the pili attached to the surface. Natural surfaces in which these micro-crawlers dwell are generally spatially inhomogeneous and have varying surface properties. Their motility is known to be affected by the topography of the surfaces. Therefore, it is possible to control bacterial movement by designing structured surfaces which can be potentially utilized for controlling biofilm architecture. In this paper, we numerically investigate the twitching motility in a two-dimensional corrugated channel. The bacterial movement is simulated by two different models: (a) a detailed tug-of-war model which extensively describe the twitching motility of bacteria assisted by pili and (b) a coarse-grained run-and-tumble model which depicts the motion of wide-ranging self-propelled particles. The simulation of bacterial motion through asymmetric corrugated channels using the above models show rectification. The bacterial transport depends on the geometric parameters of the channel and inherent system parameters such as persistence length and self-propelled velocity. In particular, the variation of the particle current with the geometric parameters of the micro-channels show that one can optimize the particle current for specific values of these parameters.

physics.bio-ph↗

arXiv2019

Tailored Morphologies in 2D Ferronematic Wells

We focus on a dilute uniform suspension of magnetic nanoparticles in a nematic-filled micron-sized shallow well with tangent boundary conditions, as a paradigm system with two coupled order parameters. This system exhibits spontaneous magnetization without magnetic fields. We numerically obtain the stable nematic and associated magnetization morphologies, induced purely by the geometry, boundary conditions and the coupling between the magnetic nanoparticles and the host nematic medium. Our most striking observations pertain to domain walls in the magnetization profile whose location can be manipulated by the coupling and material properties, and stable interior and boundary nematic defects, whose location and multiplicity can be tailored by the coupling too. These novel morphologies are not accessible in uncoupled systems and can be used for new multistable systems with singularities and stable interfaces.

cond-mat.soft↗

arXiv2018

Magnetic Nanoparticles in a Nematic Channel: A One-Dimensional Study

We study a ferromagnetic suspension or a suspension of magnetic nanoparticles in an anisotropic nematic medium, in three different one-dimensional variational settings, ordered in terms of increasing complexity. The three models are featured by a nematic energy, a magnetic energy and a magneto-nematic coupling energy and the experimentally observed patterns are modelled as local or global energy minimizers. We numerically observe polydomains with distinct states of magnetization for weak to moderate magneto-nematic coupling in our models. We demonstrate that these polydomains are stabilised by lowering the temperature (as in Mertelj et al., 2013) and that the polydomain structures lose stability as the magneto-nematic coupling increases. Some exact solutions for prototypical situations are also obtained.

cond-mat.soft↗

arXiv2017

Twitching Motility of Bacteria with Type IV Pili: Fractal Walks, First passage time and their Consequences on Microcolonies

A human pathogen, \textit{Neisseria gonorrhoeae} (NG), moves on surfaces by attaching and retracting polymeric structures called Type IV pili. The \textit{tug-of-war} between the pili results in a two-dimensional stochastic motion called \textit{twitching motility}. In this paper, with the help of real time NG trajectories, we develop coarse-grained models for their description. The \textit{fractal properties} of these trajectories are determined and their influence on \textit{first passage time} and formation of bacterial microcolonies is studied. Our main observations are as follows: (i) NG performs a fast ballistic walk on small time scales and a slow diffusive walk over long time scales with a long crossover region; (ii) There exists a characteristic persistent length $l_p^*$ which yields the fastest growth of bacterial aggregates or biofilms. Our simulations reveal that $l_{p}^{*} \sim L^{0.6}$, where $L\times L$ is the surface on which the bacteria move; (iii) The morphologies have distinct fractal characteristics as a consequence of the ballistic and diffusive motion of the constituting bacteria.

physics.bio-ph↗