arXiv subjects

Kristian Thijssen

Publications and source records attributed to Kristian Thijssen.

At least 19 recordsLinked to original sources

arXiv2026

Spontaneous Vortex Instability in Active Nematics

One of the defining results in the study of active matter is the spontaneous flow instability, through which a homogeneous, uniformly aligned state breaks translational symmetry along a single direction and develops sustained flow. The vortex state that emerges at higher activity has instead been attributed to nonlinear dynamics. Using a Floquet-type linear stability analysis, we show that no such mechanism is required: the flowing state undergoes a secondary, zigzag instability that breaks the remaining translational symmetry and produces the vortex state. We further identify a regime in which the flowing state ceases to exist and vortices emerge directly from the uniformly aligned state. Under channel confinement, the instability selects a length scale that differs from the establishedactivelengthscale, andsetsthenumberofvorticesthatappear, leadingtoaconfinement- selected pattern reminiscent of a vortex lattice, opening a route toward direct experimental tests of this instability. Full nonlinear simulations reproduce the predicted onset activities and the selected vortex number.

cond-mat.soft↗

arXiv2026

Flow Coupling Alters Topological Phase Transition in Nematic Liquid Crystals

We investigate how coupling to fluid flow influences defect-mediated transitions in two-dimensional passive nematic fluids using fluctuating nematohydrodynamic simulations. The system is driven by tuning the fluctuation strength, with increasing (decreasing) fluctuations defining the forward (backward) protocol. In the absence of flow coupling, the transition follows the Berezinskii--Kosterlitz--Thouless (BKT) scenario, governed by reversible binding and unbinding of $\pm 1/2$ defect pairs. When hydrodynamics is included, the outcome is controlled by the flow--alignment parameter. For non-aligning nematics ($λ=0$), the transition remains consistent with BKT. By contrast, for strain-rate--aligning nematics ($λ\neq 0$), bend--splay walls emerge, lowering the defect nucleation threshold and preventing sustained recombination: once created, defects remain unbound across the full range of fluctuation strengths in both forward and backward protocols. These results identify flow alignment as a fundamental control parameter for topological phase behavior and suggest that the canonical BKT transition emerges only in the absence of flow alignment.

cond-mat.soft↗

arXiv2026

How Phase Coexistence affects the mechanical properties of heterogeneous 2D suspensions

Although numerical simulations of rheological measurements typically focus on homogeneous systems, heterogeneity can profoundly impact material properties. We report on the rheological properties of a suspension of two-dimensional Lennard-Jones particles across the gas/liquid and the gas/solid coexistence lines of the system. We show how the presence of multiple coexisting states has a significant impact on the mechanical properties of these systems when compared with their homogeneous reference counterparts. Our results establish an extended map to navigate a landscape where not only density and temperature, but also phase coexistence, dictate the transition from viscous to elastic-dominated behavior under shear. These results provides a benchmark for future research into heterogeneous fluids where the coexistence of complex dynamic states is frequently observed.

cond-mat.soft↗

arXiv2025

MIPS is a Maxwell fluid with an extended and non-monotonic crossover

Understanding the mechanical properties of active suspensions is crucial for their potential applications in materials engineering. Among the various phenomena in active matter that have no analogue in equilibrium systems, motility-induced phase separation (MIPS) in active colloidal suspensions is one of the most extensively studied. However, the mechanical properties of this fundamental active state of matter remain poorly understood. This study investigates the rheology of a suspension of active colloidal particles under constant and oscillatory shear. Systems consisting of pseudo-hard active Brownian particles exhibiting co-existence of dense and dilute phases behave as a viscoelastic Maxwell fluid at low and high frequencies, displaying exclusively shear thinning across a wide range of densities and activities. Remarkably, the cross-over point between the storage and loss moduli is non-monotonic, rising with activity before the MIPS transition but falling with activity after the transition, revealing the subtleties of how active forces and intrinsically out-of-equilibrium phases affect the mechanical properties of these systems.

cond-mat.soft↗

arXiv2025

Topological kicks enhance colloidal diffusivity in topological turbulence

Colloidal inclusions in nematic fluids induce topological defects that govern their dynamics. These defects create well-understood rheological behavior in passive nematics, but the interplay between colloid-associated defects and spontaneously generated activity-induced defects introduces new dynamical regimes in active nematic turbulence. Using mesoscale simulations, we study the motion of colloids with strong anchoring in an active nematic and find effective colloid diffusivity exhibits a striking non-monotonic dependence on activity. At low activities, topological kicks from the motile activity-induced bulk defects drive frequent rearrangements of the colloid-associated defects, enhancing colloidal transport. At high activity, defect interactions become isotropic, decorrelating colloidal motion and reducing the effective diffusivity. Our results reveal how the competition between colloid-associated and activity-induced defects fundamentally shapes transport in active nematics.

cond-mat.soft↗

arXiv2024

Active particles knead three-dimensional gels into open crumbs

Colloidal gels are prime examples of functional materials exhibiting disordered, amorphous, yet meta-stable forms. They maintain stability through short-range attractive forces and their material properties are tunable by external forces. Combining persistent homology analyses and simulations of three-dimensional colloidal gels doped with active particles, we reveal novel dynamically evolving structures of colloidal gels. Specifically, we show that the local injection of energy by active dopants can lead to highly porous, yet compact gel structures that can significantly affect the transport of active particles within the modified colloidal gel. We further show the substantially distinct structural behaviour between active doping of 2D and 3D systems by revealing how passive interfaces play a topologically different role in interacting with active particles in two and three dimensions. The results open the door to an unexplored prospect of forming a wide variety of compact but highly heterogeneous and percolated porous media through active doping of 3D passive matter, with diverse implications in designing new functional materials to active ground remediation.

cond-mat.soft↗

arXiv2024

Active Darcy's Law

While bacterial swarms can exhibit active turbulence in vacant spaces, they naturally inhabit crowded environments. We numerically show that driving disorderly active fluids through porous media enhances Darcy's law. While purely active flows average to zero flux, hybrid active/driven flows display greater drift than pure-driven fluids. This enhancement is non-monotonic with activity, leading to an optimal activity to maximize flow rate. We incorporate the active contribution into an active Darcy's law, which may serve to help understand anomalous transport of swarming in porous media.

cond-mat.soft↗

arXiv2023

Spontaneous Self-Constraint in Active Nematic Flows

Active processes drive and guide biological dynamics across scales -- from subcellular cytoskeletal remodelling, through tissue development in embryogenesis, to population-level bacterial colonies expansion. In each of these, biological functionality requires collective flows to occur while self-organized structures are protected; however, the mechanisms by which active flows can spontaneously constrain their dynamics to preserve structure have not previously been explained. By studying collective flows and defect dynamics in active nematic films, we demonstrate the existence of a self-constraint -- a two-way, spontaneously arising relationship between activity-driven isosurfaces of flow boundaries and mesoscale nematic structures. Our results show that self-motile defects are tightly constrained to viscometric surfaces -- contours along which vorticity and strain-rate balance. This in turn reveals that self-motile defects break mirror symmetry when they move along a single viscometric surface, in contrast with expectations. This is explained by an interdependence between viscometric surfaces and bend walls -- elongated narrow kinks in the orientation field. Although we focus on extensile nematic films, numerical results show the constraint holds whenever activity leads to motile half-charge defects. This mesoscale cross-field self-constraint offers a new framework for tackling complex 3D active turbulence, designing dynamic control into biomimetic materials, and understanding how biological systems can employ active stress for dynamic self-organization.

cond-mat.soft↗

arXiv2023

Necking and failure of a colloidal gel arm: signatures of yielding on different length scales

Colloidal gels consist of percolating networks of interconnected arms. Their mechanical properties depend on the individual arms, and on their collective behaviour. We use numerical simulations to pull on a single arm, built from a model colloidal gel-former with short-ranged attractive interactions. Under elongation, the arm breaks by a necking instability. We analyse this behaviour at three different length scales: a rheological continuum model of the whole arm; a microscopic analysis of the particle structure and dynamics; and the local stress tensor. Combining these different measurements gives a coherent picture of the necking and failure: the neck is characterised by plastic flow that occurs for stresses close to the arm's yield stress. The arm has an amorphous local structure and has large residual stresses from its initialisation. We find that neck formation is associated with increased plastic flow, a reduction in the stability of the local structure, and a reduction in the residual stresses; this indicates that {the} system loses its solid character and starts to behave more like a viscous fluid. We discuss the implications of these results for the modelling of gel dynamics.

cond-mat.soft↗

arXiv2022

Perpendicular and Parallel Phase Separation in Two Species Driven Diffusive Lattice Gases

We study three different lattice models in which two species of diffusing particles are driven in opposite directions by an electric field. We focus on dynamical phase transitions that involve phase separation into domains that may be parallel or perpendicular to a driving field. In all cases, the perpendicular state appears for weak driving, consistent with previous work. For strong driving, we introduce two models that support the parallel state. In one model, this state occurs because of the inclusion of dynamical rules that enhance lateral diffusion during collisions; in the other, it is a result of a nearest-neighbour attractive/repulsive interaction between particles of the same/opposite species. We discuss the connections between these results and the behaviour found in off-lattice systems, including laning and freezing by heating.

cond-mat.stat-mech↗

arXiv2021

Activity-induced instabilities of brain organoids

We present an analytical and numerical investigation of the activity-induced hydrodynamic instabilities in model brain organoids. While several mechanisms have been introduced to explain the experimental observation of surface instabilities in brain organoids, the role of activity has been largely overlooked. Our results show that the active stress generated by the cells can be a, previously overlooked, contributor to the emergence of surface deformations in brain organoids.

cond-mat.soft↗

arXiv2021

Submersed Micropatterned Structures Control Active Nematic Flow, Topology and Concentration

Coupling between flows and material properties imbues rheological matter with its wide-ranging applicability, hence the excitement for harnessing the rheology of active fluids for which internal structure and continuous energy injection lead to spontaneous flows and complex, out-of-equilibrium dynamics. We propose and demonstrate a convenient, highly tuneable method for controlling flow, topology and composition within active films. Our approach establishes rheological coupling via the indirect presence of fully submersed micropatterned structures within a thin, underlying oil layer. Simulations reveal that micropatterned structures produce effective virtual boundaries within the superjacent active nematic film due to differences in viscous dissipation as a function of depth. This accessible method of applying position-dependent, effective dissipation to the active films presents a non-intrusive pathway for engineering active microfluidic systems.

cond-mat.soft↗

arXiv2020

Role of friction in multidefect ordering

We use continuum simulations to study the impact of friction on the ordering of defects in an active nematic. Even in a frictionless system, +1/2 defects tend to align side-by-side and orient antiparallel reflecting their propensity to form, and circulate with, flow vortices. Increasing friction enhances the effectiveness of the defect-defect interactions, and defects form dynamically evolving, large scale, positionally and orientationally-ordered structures which can be explained as a competition between hexagonal packing, preferred by the -1/2 defects, and rectangular packing preferred by the +1/2 defects.

cond-mat.soft↗

arXiv2020

Binding self-propelled topological defects in active turbulence

We report on the emergence of stable self-propelled bound defects in monolayers of active nematics, which form virtual full-integer topological defects in the form of vortices and asters. Through numerical simulations and analytical arguments, we identify the phase-space of the bound defect formation in active nematic monolayers. It is shown that an intricate synergy between the nature of active stresses and the flow-aligning behaviour of active particles can stabilise the motion of self-propelled positive half-integer defects into specific bound structures. Our findings uncover new complexities in active nematics with potential for triggering new experiments and theories.

cond-mat.soft↗

arXiv2020

Active nematics with anisotropic friction: the decisive role of the flow aligning parameter

We use continuum simulations to study the impact of anisotropic hydrodynamic friction on the emergent flows of active nematics. We show that, depending on whether the active particles align with or tumble in their collectively self-induced flows, anisotropic friction can result in markedly different patterns of motion. In a flow-aligning regime and at high anisotropic friction, the otherwise chaotic flows are streamlined into flow lanes with alternating directions, reproducing the experimental laning state that has been obtained by interfacing microtubule-motor protein mixtures with smectic liquid crystals. Within a flow-tumbling regime, however, we find that no such laning state is possible. Instead, the synergistic effects of friction anisotropy and flow tumbling can lead to the emergence of bound pairs of topological defects that align at an angle to the easy flow direction and navigate together throughout the domain. In addition to confirming the mechanism behind the laning states observed in experiments, our findings emphasise the role of the flow aligning parameter in the dynamics of active nematics.

cond-mat.soft↗

arXiv2020

Polar jets of swimming bacteria condensed by a patterned liquid crystal

Active matter exhibits remarkable collective behavior in which flows, continuously generated by active particles, are intertwined with the orientational order of these particles. The relationship remains poorly understood as the activity and order are difficult to control independently. Here we demonstrate important facets of this interplay by exploring dynamics of swimming bacteria in a liquid crystalline environment with pre-designed periodic splay and bend in molecular orientation. The bacteria are expelled from the bend regions and condense into polar jets that propagate and transport cargo unidirectionally along the splay regions. The bacterial jets remain stable even when the local concentration exceeds the threshold of bending instability in a non-patterned system. Collective polar propulsion and different role of bend and splay are explained by an advection-diffusion model and by numerical simulations that treat the system as a two-phase active nematic. The ability of prepatterned liquid crystalline medium to streamline the chaotic movements of swimming bacteria into polar jets that can carry cargo along a predesigned trajectory opens the door for potential applications in cell sorting, microscale delivery and soft microrobotics.

cond-mat.soft↗

arXiv2018

Twist-induced crossover from 2D to 3D turbulence in active nematics

While studies of active nematics in two dimensions have shed light on various aspects of the flow regimes and topology of active matter, three-dimensional properties of topological defects and chaotic flows remain unexplored. By confining a film of active nematics between two parallel plates, we use continuum simulations and analytical arguments to demonstrate that the crossover from quasi-2D to 3D chaotic flows is controlled by the morphology of the disclination lines. For small plate separations, the active nematic behaves as a quasi-2D material, with straight topological disclination lines spanning the height of the channel and exhibiting effectively 2D active turbulence. Upon increasing channel height, we find a crossover to 3D chaotic flows due to the contortion of disclinations above a critical activity. We further show that these contortions are engendered by twist perturbations producing a sharp change in the curvature of disclinations.

cond-mat.soft↗

arXiv2017

Dancing disclinations in confined active nematics

The spontaneous emergence of collective flows is a generic property of active fluids and often leads to chaotic flow patterns characterised by swirls, jets, and topological disclinations in their orientation field. However, the ability to achieve structured flows and ordered disclinations is of particular importance in the design and control of active systems. By confining an active nematic fluid within a channel, we find a regular motion of disclinations, in conjunction with a well defined and dynamic vortex lattice. As pairs of moving disclinations travel through the channel, they continually exchange partners producing a dynamic ordered state, reminiscent of Ceilidh dancing. We anticipate that this biomimetic ability to self-assemble organised topological disclinations and dynamically structured flow fields in engineered geometries will pave the road towards establishing new active topological microfluidic devices.

cond-mat.soft↗