arXiv subjects

Kun Zhang

Publications and source records attributed to Kun Zhang.

At least 163 records · Page 9Linked to original sources

arXiv2025

PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis

We introduce a comprehensive framework for modeling single cell transcriptomic responses to perturbations, aimed at standardizing benchmarking in this rapidly evolving field. Our approach includes a modular and user-friendly model development and evaluation platform, a collection of diverse perturbational datasets, and a set of metrics designed to fairly compare models and dissect their performance. Through extensive evaluation of both published and baseline models across diverse datasets, we highlight the limitations of widely used models, such as mode collapse. We also demonstrate the importance of rank metrics which complement traditional model fit measures, such as RMSE, for validating model effectiveness. Notably, our results show that while no single model architecture clearly outperforms others, simpler architectures are generally competitive and scale well with larger datasets. Overall, this benchmarking exercise sets new standards for model evaluation, supports robust model development, and furthers the use of these models to simulate genetic and chemical screens for therapeutic discovery.

cs.LG↗

arXiv2025

Thought Communication in Multiagent Collaboration

Natural language has long enabled human cooperation, but its lossy, ambiguous, and indirect nature limits the potential of collective intelligence. While machines are not subject to these constraints, most LLM-based multi-agent systems still rely solely on natural language, exchanging tokens or their embeddings. To go beyond language, we introduce a new paradigm, thought communication, which enables agents to interact directly mind-to-mind, akin to telepathy. To uncover these latent thoughts in a principled way, we formalize the process as a general latent variable model, where agent states are generated by an unknown function of underlying thoughts. We prove that, in a nonparametric setting without auxiliary information, both shared and private latent thoughts between any pair of agents can be identified. Moreover, the global structure of thought sharing, including which agents share which thoughts and how these relationships are structured, can also be recovered with theoretical guarantees. Guided by the established theory, we develop a framework that extracts latent thoughts from all agents prior to communication and assigns each agent the relevant thoughts, along with their sharing patterns. This paradigm naturally extends beyond LLMs to all modalities, as most observational data arise from hidden generative processes. Experiments on both synthetic and real-world benchmarks validate the theory and demonstrate the collaborative advantages of thought communication. We hope this work illuminates the potential of leveraging the hidden world, as many challenges remain unsolvable through surface-level observation alone, regardless of compute or data scale.

cs.LG↗

arXiv2025

Online Time Series Forecasting with Theoretical Guarantees

This paper is concerned with online time series forecasting, where unknown distribution shifts occur over time, i.e., latent variables influence the mapping from historical to future observations. To develop an automated way of online time series forecasting, we propose a Theoretical framework for Online Time-series forecasting (TOT in short) with theoretical guarantees. Specifically, we prove that supplying a forecaster with latent variables tightens the Bayes risk, the benefit endures under estimation uncertainty of latent variables and grows as the latent variables achieve a more precise identifiability. To better introduce latent variables into online forecasting algorithms, we further propose to identify latent variables with minimal adjacent observations. Based on these results, we devise a model-agnostic blueprint by employing a temporal decoder to match the distribution of observed variables and two independent noise estimators to model the causal inference of latent variables and mixing procedures of observed variables, respectively. Experiment results on synthetic data support our theoretical claims. Moreover, plug-in implementations built on several baselines yield general improvement across multiple benchmarks, highlighting the effectiveness in real-world applications.

cs.LG↗

arXiv2025

Towards Identifiability of Hierarchical Temporal Causal Representation Learning

Modeling hierarchical latent dynamics behind time series data is critical for capturing temporal dependencies across multiple levels of abstraction in real-world tasks. However, existing temporal causal representation learning methods fail to capture such dynamics, as they fail to recover the joint distribution of hierarchical latent variables from \textit{single-timestep observed variables}. Interestingly, we find that the joint distribution of hierarchical latent variables can be uniquely determined using three conditionally independent observations. Building on this insight, we propose a Causally Hierarchical Latent Dynamic (CHiLD) identification framework. Our approach first employs temporal contextual observed variables to identify the joint distribution of multi-layer latent variables. Sequentially, we exploit the natural sparsity of the hierarchical structure among latent variables to identify latent variables within each layer. Guided by the theoretical results, we develop a time series generative model grounded in variational inference. This model incorporates a contextual encoder to reconstruct multi-layer latent variables and normalize flow-based hierarchical prior networks to impose the independent noise condition of hierarchical latent dynamics. Empirical evaluations on both synthetic and real-world datasets validate our theoretical claims and demonstrate the effectiveness of CHiLD in modeling hierarchical latent dynamics.

cs.LG↗

arXiv2025

A Survey on LLM-as-a-Judge

Accurate and consistent evaluation is crucial for decision-making across numerous fields, yet it remains a challenging task due to inherent subjectivity, variability, and scale. Large Language Models (LLMs) have achieved remarkable success across diverse domains, leading to the emergence of "LLM-as-a-Judge," where LLMs are employed as evaluators for complex tasks. With their ability to process diverse data types and provide scalable, cost-effective, and consistent assessments, LLMs present a compelling alternative to traditional expert-driven evaluations. However, ensuring the reliability of LLM-as-a-Judge systems remains a significant challenge that requires careful design and standardization. This paper provides a comprehensive survey of LLM-as-a-Judge, addressing the core question: How can reliable LLM-as-a-Judge systems be built? We explore strategies to enhance reliability, including improving consistency, mitigating biases, and adapting to diverse assessment scenarios. Additionally, we propose methodologies for evaluating the reliability of LLM-as-a-Judge systems, supported by a novel benchmark designed for this purpose. To advance the development and real-world deployment of LLM-as-a-Judge systems, we also discussed practical applications, challenges, and future directions. This survey serves as a foundational reference for researchers and practitioners in this rapidly evolving field.

cs.CL↗

arXiv2025

CausalVerse: Benchmarking Causal Representation Learning with Configurable High-Fidelity Simulations

Causal Representation Learning (CRL) aims to uncover the data-generating process and identify the underlying causal variables and relations, whose evaluation remains inherently challenging due to the requirement of known ground-truth causal variables and causal structure. Existing evaluations often rely on either simplistic synthetic datasets or downstream performance on real-world tasks, generally suffering a dilemma between realism and evaluative precision. In this paper, we introduce a new benchmark for CRL using high-fidelity simulated visual data that retains both realistic visual complexity and, more importantly, access to ground-truth causal generating processes. The dataset comprises around 200 thousand images and 3 million video frames across 24 sub-scenes in four domains: static image generation, dynamic physical simulations, robotic manipulations, and traffic situation analysis. These scenarios range from static to dynamic settings, simple to complex structures, and single to multi-agent interactions, offering a comprehensive testbed that hopefully bridges the gap between rigorous evaluation and real-world applicability. In addition, we provide flexible access to the underlying causal structures, allowing users to modify or configure them to align with the required assumptions in CRL, such as available domain labels, temporal dependencies, or intervention histories. Leveraging this benchmark, we evaluated representative CRL methods across diverse paradigms and offered empirical insights to assist practitioners and newcomers in choosing or extending appropriate CRL frameworks to properly address specific types of real problems that can benefit from the CRL perspective. Welcome to visit our: Project page:https://causal-verse.github.io/, Dataset:https://huggingface.co/CausalVerse.

cs.LG↗

arXiv2025

Towards Self-Refinement of Vision-Language Models with Triangular Consistency

Vision-Language Models (VLMs) integrate visual knowledge with the analytical capabilities of Large Language Models (LLMs) through supervised visual instruction tuning, using image-question-answer triplets. However, the potential of VLMs trained without supervised instruction remains largely unexplored. This study validates that VLMs possess inherent self-refinement capabilities, enabling them to generate high-quality supervised data without external inputs and thereby learn autonomously. Specifically, to stimulate the self-refinement ability of VLMs, we propose a self-refinement framework based on a Triangular Consistency principle: within the image-query-answer triangle, any masked elements should be consistently and accurately reconstructed. The framework involves three steps: (1) We enable the instruction generation ability of VLMs by adding multi-task instruction tuning like image$\rightarrow$question-answer or image-answer$\rightarrow$question. (2) We generate image-query-answer triplets from unlabeled images and use the Triangular Consistency principle for filtering. (3) The model is further updated using the filtered synthetic data. To investigate the underlying mechanisms behind this self-refinement capability, we conduct a theoretical analysis from a causal perspective. Using the widely recognized LLaVA-1.5 as our baseline, our experiments reveal that the model can autonomously achieve consistent, though deliberately modest, improvements across multiple benchmarks without any external supervision, such as human annotations or environmental feedback. We expect that the insights of this study on the self-refinement ability of VLMs can inspire future research on the learning mechanism of VLMs. Code is available at https://github.com/dengyl20/SRF-LLaVA-1.5.

cs.CV↗

arXiv2025

Quantum Teleportation in Non-equilibrium Environments and Fixed-point Fidelity

Quantum teleportation, a fundamental protocol in quantum information science, enables the transfer of quantum states through entangled particle pairs and classical communication channels. While ideal quantum teleportation requires maximally entangled states as resources, real-world implementations inevitably face environmental noise and decoherence effects. In this work, we investigate quantum teleportation in non-equilibrium environments with different temperatures or chemical potentials. We apply the Bloch-Redfield equation to characterize the non-equilibrium dynamics. In both bosonic and fermionic setups, the fidelity can be enhanced beyond the equilibrium values. Under specific non-equilibrium conditions, the fidelities of all input states are identical. We call it teleportation with a fixed-point fidelity. Notably, at the fixed-point, fidelity can also be enhanced by combining the two detuned qubits and non-equilibrium environments. These findings provide important guidance for implementing quantum communication protocols in realistic environments, while the fixed-point mechanism offers a promising pathway toward simplifying practical quantum teleportation schemes.

quant-ph↗

arXiv2025

SUMMA: A Multimodal Large Language Model for Advertisement Summarization

Understanding multimodal video ads is crucial for improving query-ad matching and relevance ranking on short video platforms, enhancing advertising effectiveness and user experience. However, the effective utilization of multimodal information with high commercial value still largely constrained by reliance on highly compressed video embeddings-has long been inadequate. To address this, we propose SUMMA (the abbreviation of Summarizing MultiModal Ads), a multimodal model that automatically processes video ads into summaries highlighting the content of highest commercial value, thus improving their comprehension and ranking in Douyin search-advertising systems. SUMMA is developed via a two-stage training strategy-multimodal supervised fine-tuning followed by reinforcement learning with a mixed reward mechanism-on domain-specific data containing video frames and ASR/OCR transcripts, generating commercially valuable and explainable summaries. We integrate SUMMA-generated summaries into our production pipeline, directly enhancing the candidate retrieval and relevance ranking stages in real search-advertising systems. Both offline and online experiments show substantial improvements over baselines, with online results indicating a statistically significant 1.5% increase in advertising revenue. Our work establishes a novel paradigm for condensing multimodal information into representative texts, effectively aligning visual ad content with user query intent in retrieval and recommendation scenarios.

cs.IR↗

arXiv2025

Persuasion with Verifiable Information

This paper studies a game in which an informed sender with state-independent preferences uses verifiable messages to convince a receiver to choose an action from a finite set. We characterize the equilibrium outcomes of the game and compare them with commitment outcomes in information design. We provide conditions under which a commitment outcome is an equilibrium outcome and identify environments in which the sender does not benefit from commitment power. Our findings offer insights into the interchangeability of verifiability and commitment in applied settings.

econ.TH↗

arXiv2025

Controllable Video Generation with Provable Disentanglement

Controllable video generation remains a significant challenge, despite recent advances in generating high-quality and consistent videos. Most existing methods for controlling video generation treat the video as a whole, neglecting intricate fine-grained spatiotemporal relationships, which limits both control precision and efficiency. In this paper, we propose Controllable Video Generative Adversarial Networks (CoVoGAN) to disentangle the video concepts, thus facilitating efficient and independent control over individual concepts. Specifically, following the minimal change principle, we first disentangle static and dynamic latent variables. We then leverage the sufficient change property to achieve component-wise identifiability of dynamic latent variables, enabling disentangled control of video generation. To establish the theoretical foundation, we provide a rigorous analysis demonstrating the identifiability of our approach. Building on these theoretical insights, we design a Temporal Transition Module to disentangle latent dynamics. To enforce the minimal change principle and sufficient change property, we minimize the dimensionality of latent dynamic variables and impose temporal conditional independence. To validate our approach, we integrate this module as a plug-in for GANs. Extensive qualitative and quantitative experiments on various video generation benchmarks demonstrate that our method significantly improves generation quality and controllability across diverse real-world scenarios.

cs.CV↗

arXiv2025

Learning Counterfactual Outcomes Under Rank Preservation

Counterfactual inference aims to estimate the counterfactual outcome at the individual level given knowledge of an observed treatment and the factual outcome, with broad applications in fields such as epidemiology, econometrics, and management science. Previous methods rely on a known structural causal model (SCM) or assume the homogeneity of the exogenous variable and strict monotonicity between the outcome and exogenous variable. In this paper, we propose a principled approach for identifying and estimating the counterfactual outcome. We first introduce a simple and intuitive rank preservation assumption to identify the counterfactual outcome without relying on a known structural causal model. Building on this, we propose a novel ideal loss for theoretically unbiased learning of the counterfactual outcome and further develop a kernel-based estimator for its empirical estimation. Our theoretical analysis shows that the rank preservation assumption is not stronger than the homogeneity and strict monotonicity assumptions, and shows that the proposed ideal loss is convex, and the proposed estimator is unbiased. Extensive semi-synthetic and real-world experiments are conducted to demonstrate the effectiveness of the proposed method.

cs.LG↗

arXiv2025

Nonparametric Identification of Latent Concepts

We are born with the ability to learn concepts by comparing diverse observations. This helps us to understand the new world in a compositional manner and facilitates extrapolation, as objects naturally consist of multiple concepts. In this work, we argue that the cognitive mechanism of comparison, fundamental to human learning, is also vital for machines to recover true concepts underlying the data. This offers correctness guarantees for the field of concept learning, which, despite its impressive empirical successes, still lacks general theoretical support. Specifically, we aim to develop a theoretical framework for the identifiability of concepts with multiple classes of observations. We show that with sufficient diversity across classes, hidden concepts can be identified without assuming specific concept types, functional relations, or parametric generative models. Interestingly, even when conditions are not globally satisfied, we can still provide alternative guarantees for as many concepts as possible based on local comparisons, thereby extending the applicability of our theory to more flexible scenarios. Moreover, the hidden structure between classes and concepts can also be identified nonparametrically. We validate our theoretical results in both synthetic and real-world settings.

cs.LG↗

arXiv2025

Introduction to the Chinese Space Station Survey Telescope (CSST)

The Chinese Space Station Survey Telescope (CSST) is an upcoming Stage-IV sky survey telescope, distinguished by its large field of view (FoV), high image quality, and multi-band observation capabilities. It can simultaneously conduct precise measurements of the Universe by performing multi-color photometric imaging and slitless spectroscopic surveys. The CSST is equipped with five scientific instruments, i.e. Multi-band Imaging and Slitless Spectroscopy Survey Camera (SC), Multi-Channel Imager (MCI), Integral Field Spectrograph (IFS), Cool Planet Imaging Coronagraph (CPI-C), and THz Spectrometer (TS). Using these instruments, CSST is expected to make significant contributions and discoveries across various astronomical fields, including cosmology, galaxies and active galactic nuclei (AGN), the Milky Way and nearby galaxies, stars, exoplanets, Solar System objects, astrometry, and transients and variable sources. This review aims to provide a comprehensive overview of the CSST instruments, observational capabilities, data products, and scientific potential.

astro-ph.IM↗

arXiv2025

Palladium-Coated Laterally Vibrating Resonators (LVRs) for Hydrogen Sensing

This work presents a novel hydrogen sensor based on 30% scandium-doped aluminum nitride (ScAlN) laterally vibrating resonators (LVRs) functionalized with a palladium (Pd) thin film. The micro-electro-mechanical system (MEMS) device operates by detecting shifts in resonant frequency resulting from hydrogen absorption in the Pd layer. The sensor demonstrates a high mechanical quality factor (Qm) of 820, an electromechanical coupling coefficient (kt2) of 3.18%, and an enhanced responsivity of 26 Hz/ppm in the low-parts per million (ppm) range, making it highly suitable for hydrogen leak detection. Compared to existing MHz-range technologies, the sensor achieves up to 50x higher sensitivity, while also offering multi-frequency definition in a single lithographic step, minimal footprint, and the highest quality factor among comparable miniaturized platforms.

physics.ins-det↗

arXiv2025

Results of the NeurIPS 2023 Neural MMO Competition on Multi-task Reinforcement Learning

We present the results of the NeurIPS 2023 Neural MMO Competition, which attracted over 200 participants and submissions. Participants trained goal-conditional policies that generalize to tasks, maps, and opponents never seen during training. The top solution achieved a score 4x higher than our baseline within 8 hours of training on a single 4090 GPU. We open-source everything relating to Neural MMO and the competition under the MIT license, including the policy weights and training code for our baseline and for the top submissions.

cs.LG↗

arXiv2025

Causal evidence for the primordiality of colours in trans-Neptunian objects

The origins of the colours of Trans-Neptunian Objects (TNOs) represent a crucial unresolved question, central to understanding the history of our Solar System. Recent observational surveys revealed correlations between the eccentricity and inclination of TNOs, and their colours. This rekindled the long-standing debate on whether these colours reflect the conditions of TNO formation or their subsequent evolution. We address this question using a model-agnostic, data-driven approach that unanimously converges to a common causal graph from the analysis of two different datasets, each from two different conditional independence test methods. For evaluation, we demonstrate how our model is consistent with the currently-accepted paradigms of TNOs' dynamical histories, without involving any orbital modelling or physics-based assumptions. Our causal model (with no knowledge of the existence of Neptune) predicts the need for an unknown confounding variable, consistent with Neptune's effects. The model predicts that the colour of TNOs is the root cause of their inclination distribution, rather than the other way around. This strongly suggests that the colours of TNOs reflect an underlying dynamical property, most likely their formation location. Our model excludes formation scenarios that invoke substantial colour modification by subsequent evolution. We conclude that the colours of TNOs are predominantly primordial.

astro-ph.EP↗

arXiv2025

Observation of anomalous Floquet non-Abelian topological insulators

Non-Abelian topological phases, which go beyond traditional Abelian topological band theory, are garnering increasing attention. This is further spurred by periodic driving, leading to predictions of many novel multi-gap Floquet topological phases, including anomalous Euler and Dirac string phases induced by non-Abelian Floquet braiding, as well as Floquet non-Abelian topological insulators (FNTIs) that exhibit multifold bulk-edge correspondence. Here, we report the first experimental realization of anomalous FNTIs, which demonstrate topological edge modes in all three gaps despite having a trivial bulk charge. Concretely, we construct an experimentally feasible one-dimensional three-band Floquet model and implement it in acoustics by integrating time-periodic coupling circuits to static acoustic crystals. Furthermore, we observe counterintuitive topological interface modes in the domain-wall formed by an anomalous FNTI and its counterpart with swapped driving sequences, modes previously inaccessible in Floquet Abelian systems. Our work paves the way for further experimental exploration of the uncharted non-equilibrium topological physics.

cond-mat.mes-hall↗