arXiv subjects

Kunihiro Wasa

Publications and source records attributed to Kunihiro Wasa.

At least 19 recordsLinked to original sources

arXiv2025

Enumerating Graphlets with Amortized Time Complexity Independent of Graph Size

Graphlets of order $k$ in a graph $G$ are connected subgraphs induced by $k$ nodes (called $k$-graphlets) or by $k$ edges (called edge $k$-graphlets). They are among the interesting subgraphs in network analysis to get insights on both the local and global structure of a network. While several algorithms exist for discovering and enumerating graphlets, the cost per solution of such algorithms typically depends on the size of the graph $G$, or its maximum degree. In real networks, even the latter can be in the order of millions, whereas $k$ is typically required to be a small value. In this paper we provide the first algorithm to list all graphlets of order $k$ in a graph $G=(V,E)$ with an amortized cost per solution depending \emph{solely} on the order $k$, contrarily to previous approaches where the cost depends \emph{also} on the size of $G$ or its maximum degree. Specifically, we show that it is possible to list $k$-graphlets in $O(k^2)$ time per solution, and to list edge $k$-graphlets in $O(k)$ time per solution. Furthermore we show that, if the input graph has bounded degree, then the cost per solution for listing $k$-graphlets is reduced to $O(k)$. Whenever $k = O(1)$, as it is often the case in practical settings, these algorithms are the first to achieve constant time per solution.

cs.DS↗

arXiv2024

Efficient Constant-Factor Approximate Enumeration of Minimal Subsets for Monotone Properties with Weight Constraints

A property $Π$ on a finite set $U$ is \emph{monotone} if for every $X \subseteq U$ satisfying $Π$, every superset $Y \subseteq U$ of $X$ also satisfies $Π$. Many combinatorial properties can be seen as monotone properties. The problem of finding a minimum subset of $U$ satisfying $Π$ is a central problem in combinatorial optimization. Although many approximate/exact algorithms have been developed to solve this kind of problem on numerous properties, a solution obtained by these algorithms is often unsuitable for real-world applications due to the difficulty of building accurate mathematical models on real-world problems. A promising approach to overcome this difficulty is to \emph{enumerate} multiple small solutions rather than to \emph{find} a single small solution. To this end, given a weight function $w: U \to \mathbb N$ and an integer $k$, we devise algorithms that \emph{approximately} enumerate all minimal subsets of $U$ with weight at most $k$ satisfying $Π$ for various monotone properties $Π$, where "approximate enumeration" means that algorithms output all minimal subsets satisfying $Π$ whose weight at most $k$ and may output some minimal subsets satisfying $Π$ whose weight exceeds $k$ but is at most $ck$ for some constant $c \ge 1$. These algorithms allow us to efficiently enumerate minimal vertex covers, minimal dominating sets in bounded degree graphs, minimal feedback vertex sets, minimal hitting sets in bounded rank hypergraphs, etc., of weight at most $k$ with constant approximation factors.

cs.DS↗

arXiv2024

Reconfiguration and Enumeration of Optimal Cyclic Ladder Lotteries

A ladder lottery, known as ``Amidakuji'' in Japan, is a common way to decide an assignment at random. In this paper, we investigate reconfiguration and enumeration problems of cyclic ladder lotteries. First, when a permutation $π$ and an optimal displacement vector $\mathbf{x}$ are given, we investigate the reconfiguration and enumeration problems of the ``optimal'' cyclic ladder lotteries of $π$ and $\mathbf{x}$. Next, for a give permutation $π$ we consider reconfiguration and enumeration problems of the optimal displacement vectors of $π$.

cs.DS↗

arXiv2024

An Approximation Algorithm for $K$-best Enumeration of Minimal Connected Edge Dominating Sets with Cardinality Constraints

\emph{$K$-best enumeration}, which asks to output $k$-best solutions without duplication, is a helpful tool in data analysis for many fields. In such fields, graphs typically represent data. Thus subgraph enumeration has been paid much attention to such fields. However, $k$-best enumeration tends to be intractable since, in many cases, finding one optimum solution is \NP-hard. To overcome this difficulty, we combine $k$-best enumeration with a concept of enumeration algorithms called \emph{approximation enumeration algorithms}. As a main result, we propose a $4$-approximation algorithm for minimal connected edge dominating sets which outputs $k$ minimal solutions with cardinality at most $4\cdot\OPT$, where $\OPT$ is the cardinality of a minimum solution which is \emph{not} outputted by the algorithm. Our proposed algorithm runs in $\order{nm^2Δ}$ delay, where $n$, $m$, $Δ$ are the number of vertices, the number of edges, and the maximum degree of an input graph.

cs.DS↗

arXiv2024

Polynomial-Delay Enumeration of Large Maximal Common Independent Sets in Two Matroids and Beyond

Finding a maximum cardinality common independent set in two matroids (also known as \textsc{Matroid Intersection}) is a classical combinatorial optimization problem, which generalizes several well-known problems, such as finding a maximum bipartite matching, a maximum colorful forest, and an arborescence in directed graphs. Enumerating all maximal common independent sets in two (or more) matroids is a classical enumeration problem. In this paper, we address an ``intersection'' of these problems: Given two matroids and a threshold $τ$, the goal is to enumerate all maximal common independent sets in the matroids with cardinality at least $τ$. We show that this problem can be solved in polynomial delay and polynomial space. Moreover, our technique can be extended to a more general problem, which is relevant to Matroid Matching. We give a polynomial-delay and polynomial-space algorithm for enumerating all maximal ``matchings'' with cardinality at least $τ$, assuming that the optimization counterpart is ``tractable'' in a certain sense. This extension allows us to enumerate small minimal connected vertex covers in subcubic graphs. We also discuss a framework to convert enumeration with cardinality constraints into ranked enumeration.

math.CO↗

arXiv2023

On the hardness of inclusion-wise minimal separators enumeration

Enumeration problems are often encountered as key subroutines in the exact computation of graph parameters such as chromatic number, treewidth, or treedepth. In the case of treedepth computation, the enumeration of inclusion-wise minimal separators plays a crucial role. However and quite surprisingly, the complexity status of this problem has not been settled since it has been posed as an open direction by Kloks and Kratsch in 1998. Recently at the PACE 2020 competition dedicated to treedepth computation, solvers have been circumventing that by listing all minimal $a$-$b$ separators and filtering out those that are not inclusion-wise minimal, at the cost of efficiency. Naturally, having an efficient algorithm for listing inclusion-wise minimal separators would drastically improve such practical algorithms. In this note, however, we show that no efficient algorithm is to be expected from an output-sensitive perspective, namely, we prove that there is no output-polynomial time algorithm for inclusion-wise minimal separators enumeration unless P = NP.

cs.DM↗

arXiv2023

Reconfiguring (non-spanning) arborescences

In this paper, we investigate the computational complexity of subgraph reconfiguration problems in directed graphs. More specifically, we focus on the problem of reconfiguring arborescences in a digraph, where an arborescence is a directed graph such that its underlying undirected graph forms a tree and all vertices have in-degree at most 1. Given two arborescences in a digraph, the goal of the problem is to determine whether there is a (reconfiguration) sequence of arborescences between the given arborescences such that each arborescence in the sequence can be obtained from the previous one by removing an arc and then adding another arc. We show that this problem can be solved in polynomial time, whereas the problem is PSPACE-complete when we restrict arborescences in a reconfiguration sequence to directed paths or relax to directed acyclic graphs. We also show that there is a polynomial-time algorithm for finding a shortest reconfiguration sequence between two spanning arborescences.

cs.DS↗

arXiv2023

Hardness of braided quantum circuit optimization in the surface code

Large-scale quantum information processing requires the use of quantum error correcting codes to mitigate the effects of noise in quantum devices. Topological error-correcting codes, such as surface codes, are promising candidates as they can be implemented using only local interactions in a two-dimensional array of physical qubits. Procedures such as defect braiding and lattice surgery can then be used to realize a fault-tolerant universal set of gates on the logical space of such topological codes. However, error correction also introduces a significant overhead in computation time, the number of physical qubits, and the number of physical gates. While optimizing fault-tolerant circuits to minimize this overhead is critical, the computational complexity of such optimization problems remains unknown. This ambiguity leaves room for doubt surrounding the most effective methods for compiling fault-tolerant circuits for a large-scale quantum computer. In this paper, we show that the optimization of a special subset of braided quantum circuits is NP-hard by a polynomial-time reduction of the optimization problem into a specific problem called Planar Rectilinear 3SAT.

quant-ph↗

arXiv2022

Polynomial-Delay Enumeration of Large Maximal Matchings

Enumerating matchings is a classical problem in the field of enumeration algorithms. There are polynomial-delay enumeration algorithms for several settings, such as enumerating perfect matchings, maximal matchings, and (weighted) matchings in specific orders. In this paper, we present polynomial-delay enumeration algorithms for maximal matchings with cardinality at least given threshold $t$. Our algorithm enumerates all such matchings in $O(nm)$ delay with exponential space, where $n$ and $m$ are the number of vertices and edges of an input graph, respectively. We also present a polynomial-delay and polynomial-space enumeration algorithm for this problem. As a variant of this algorithm, we give an algorithm that enumerates all maximal matchings in non-decreasing order of its cardinality and runs in $O(nm)$ delay.

cs.DS↗

arXiv2022

Linear-Delay Enumeration for Minimal Steiner Problems

Kimelfeld and Sagiv [Kimelfeld and Sagiv, PODS 2006], [Kimelfeld and Sagiv, Inf. Syst. 2008] pointed out the problem of enumerating $K$-fragments is of great importance in a keyword search on data graphs. In a graph-theoretic term, the problem corresponds to enumerating minimal Steiner trees in (directed) graphs. In this paper, we propose a linear-delay and polynomial-space algorithm for enumerating all minimal Steiner trees, improving on a previous result in [Kimelfeld and Sagiv, Inf. Syst. 2008]. Our enumeration algorithm can be extended to other Steiner problems, such as minimal Steiner forests, minimal terminal Steiner trees, and minimal directed Steiner trees. As another variant of the minimal Steiner tree enumeration problem, we study the problem of enumerating minimal induced Steiner subgraphs. We propose a polynomial-delay and exponential-space enumeration algorithm of minimal induced Steiner subgraphs on claw-free graphs. Contrary to these tractable results, we show that the problem of enumerating minimal group Steiner trees is at least as hard as the minimal transversal enumeration problem on hypergraphs.

cs.DS↗

arXiv2022

Independent set reconfiguration on directed graphs

\textsc{Directed Token Sliding} asks, given a directed graph and two sets of pairwise nonadjacent vertices, whether one can reach from one set to the other by repeatedly applying a local operation that exchanges a vertex in the current set with one of its out-neighbors, while keeping the nonadjacency. It can be seen as a reconfiguration process where a token is placed on each vertex in the current set, and the local operation slides a token along an arc respecting its direction. Previously, such a problem was extensively studied on undirected graphs, where the edges have no directions and thus the local operation is symmetric. \textsc{Directed Token Sliding} is a generalization of its undirected variant since an undirected edge can be simulated by two arcs of opposite directions. In this paper, we initiate the algorithmic study of \textsc{Directed Token Sliding}. We first observe that the problem is PSPACE-complete even if we forbid parallel arcs in opposite directions and that the problem on directed acyclic graphs is NP-complete and W[1]-hard parameterized by the size of the sets in consideration. We then show our main result: a linear-time algorithm for the problem on directed graphs whose underlying undirected graphs are trees, which are called polytrees. Such a result is also known for the undirected variant of the problem on trees~[Demaine et al.~TCS 2015], but the techniques used here are quite different because of the asymmetric nature of the directed problem. We present a characterization of yes-instances based on the existence of a certain set of directed paths, and then derive simple equivalent conditions from it by some observations, which admits an efficient algorithm. For the polytree case, we also present a quadratic-time algorithm that outputs, if the input is a yes-instance, one of the shortest reconfiguration sequences.

cs.DS↗

arXiv2022

Reconfiguration of Spanning Trees with Degree Constraint or Diameter Constraint

We investigate the complexity of finding a transformation from a given spanning tree in a graph to another given spanning tree in the same graph via a sequence of edge flips. The exchange property of the matroid bases immediately yields that such a transformation always exists if we have no constraints on spanning trees. In this paper, we wish to find a transformation which passes through only spanning trees satisfying some constraint. Our focus is bounding either the maximum degree or the diameter of spanning trees, and we give the following results. The problem with a lower bound on maximum degree is solvable in polynomial time, while the problem with an upper bound on maximum degree is PSPACE-complete. The problem with a lower bound on diameter is NP-hard, while the problem with an upper bound on diameter is solvable in polynomial time.

cs.DS↗

arXiv2021

Reconfiguration of Regular Induced Subgraphs

We study the problem of checking the existence of a step-by-step transformation of $d$-regular induced subgraphs in a graph, where $d \ge 0$ and each step in the transformation must follow a fixed reconfiguration rule. Our problem for $d=0$ is equivalent to \textsc{Independent Set Reconfiguration}, which is one of the most well-studied reconfiguration problems. In this paper, we systematically investigate the complexity of the problem, in particular, on chordal graphs and bipartite graphs. Our results give interesting contrasts to known ones for \textsc{Independent Set Reconfiguration}.

cs.DS↗

arXiv2021

Constant Amortized Time Enumeration of Eulerian trails

In this paper, we consider enumeration problems for edge-distinct and vertex-distinct Eulerian trails. Here, two Eulerian trails are \emph{edge-distinct} if the edge sequences are not identical, and they are \emph{vertex-distinct} if the vertex sequences are not identical. As the main result, we propose optimal enumeration algorithms for both problems, that is, these algorithm runs in $\mathcal{O}(N)$ total time, where $N$ is the number of solutions. Our algorithms are based on the reverse search technique introduced by [Avis and Fukuda, DAM 1996], and the push out amortization technique introduced by [Uno, WADS 2015].

cs.DS↗

arXiv2020

Reconfiguration of Spanning Trees with Many or Few Leaves

Let $G$ be a graph and $T_1,T_2$ be two spanning trees of $G$. We say that $T_1$ can be transformed into $T_2$ via an edge flip if there exist two edges $e \in T_1$ and $f$ in $T_2$ such that $T_2= (T_1 \setminus e) \cup f$. Since spanning trees form a matroid, one can indeed transform a spanning tree into any other via a sequence of edge flips, as observed by Ito et al. We investigate the problem of determining, given two spanning trees $T_1,T_2$ with an additional property $Π$, if there exists an edge flip transformation from $T_1$ to $T_2$ keeping property $Π$ all along. First we show that determining if there exists a transformation from $T_1$ to $T_2$ such that all the trees of the sequence have at most $k$ (for any fixed $k \ge 3$) leaves is PSPACE-complete. We then prove that determining if there exists a transformation from $T_1$ to $T_2$ such that all the trees of the sequence have at least $k$ leaves (where $k$ is part of the input) is PSPACE-complete even restricted to split, bipartite or planar graphs. We complete this result by showing that the problem becomes polynomial for cographs, interval graphs and when $k=n-2$.

cs.DS↗

arXiv2019

Constant Amortized Time Enumeration of Independent Sets for Graphs with Bounded Clique Number

In this study, we address the independent set enumeration problem. Although several efficient enumeration algorithms and careful analyses have been proposed for maximal independent sets, no fine-grained analysis has been given for the non-maximal variant. From the main result, we propose an algorithm $\texttt{EIS}$ for the non-maximal variant that runs in $O(q)$ amortized time and linear space, where $q$ is the clique number, i.e., the maximum size of a clique in an input graph. Note that $\texttt{EIS}$ works correctly even if the exact value of $q$ is unknown. Despite its simplicity, $\texttt{EIS}$ is optimal for graphs with a bounded clique number, such as, triangle-free graphs, planar graphs, bounded degenerate graphs, locally bounded expansion graphs, and $F$-free graphs for any fixed graph $F$, where a $F$-free graph is a graph that has no copy of $F$ as a subgraph.

cs.DS↗

arXiv2019

The Perfect Matching Reconfiguration Problem

We study the perfect matching reconfiguration problem: Given two perfect matchings of a graph, is there a sequence of flip operations that transforms one into the other? Here, a flip operation exchanges the edges in an alternating cycle of length four. We are interested in the complexity of this decision problem from the viewpoint of graph classes. We first prove that the problem is PSPACE-complete even for split graphs and for bipartite graphs of bounded bandwidth with maximum degree five. We then investigate polynomial-time solvable cases. Specifically, we prove that the problem is solvable in polynomial time for strongly orderable graphs (that include interval graphs and strongly chordal graphs), for outerplanar graphs, and for cographs (also known as $P_4$-free graphs). Furthermore, for each yes-instance from these graph classes, we show that a linear number of flip operations is sufficient and we can exhibit a corresponding sequence of flip operations in polynomial time.

cs.DS↗

arXiv2019

An Efficient Algorithm for Enumerating Chordal Bipartite Induced Subgraphs in Sparse Graphs

In this paper, we propose a characterization of chordal bipartite graphs and an efficient enumeration algorithm for chordal bipartite induced subgraphs. A chordal bipartite graph is a bipartite graph without induced cycles with length six or more. It is known that the incident graph of a hypergraph is chordal bipartite graph if and only if the hypergraph is $β$-acyclic. As the main result of our paper, we show that a graph $G$ is chordal bipartite if and only if there is a special vertex elimination ordering for $G$, called CBEO. Moreover, we propose an algorithm ECB which enumerates all chordal bipartite induced subgraphs in $O(ktΔ^2)$ time per solution on average, where $k$ is the degeneracy, $t$ is the maximum size of $K_{t,t}$ as an induced subgraph, and $Δ$ is the degree. ECB achieves constant amortized time enumeration for bounded degree graphs.

cs.DS↗