arXiv subjects

Lei Li

Publications and source records attributed to Lei Li.

At least 415 records · Page 23Linked to original sources

arXiv2024

Math-Shepherd: Verify and Reinforce LLMs Step-by-step without Human Annotations

In this paper, we present an innovative process-oriented math process reward model called \textbf{Math-Shepherd}, which assigns a reward score to each step of math problem solutions. The training of Math-Shepherd is achieved using automatically constructed process-wise supervision data, breaking the bottleneck of heavy reliance on manual annotation in existing work. We explore the effectiveness of Math-Shepherd in two scenarios: 1) \textit{Verification}: Math-Shepherd is utilized for reranking multiple outputs generated by Large Language Models (LLMs); 2) \textit{Reinforcement Learning}: Math-Shepherd is employed to reinforce LLMs with step-by-step Proximal Policy Optimization (PPO). With Math-Shepherd, a series of open-source LLMs demonstrates exceptional performance. For instance, the step-by-step PPO with Math-Shepherd significantly improves the accuracy of Mistral-7B (77.9\%$\to$84.1\% on GSM8K and 28.6\%$\to$33.0\% on MATH). The accuracy can be further enhanced to 89.1\% and 43.5\% on GSM8K and MATH with the verification of Math-Shepherd, respectively. We believe that automatic process supervision holds significant potential for the future evolution of LLMs.

cs.AI↗

arXiv2024

Where It Really Matters: Few-Shot Environmental Conservation Media Monitoring for Low-Resource Languages

Environmental conservation organizations routinely monitor news content on conservation in protected areas to maintain situational awareness of developments that can have an environmental impact. Existing automated media monitoring systems require large amounts of data labeled by domain experts, which is only feasible at scale for high-resource languages like English. However, such tools are most needed in the global south where news of interest is mainly in local low-resource languages, and far fewer experts are available to annotate datasets sustainably. In this paper, we propose NewsSerow, a method to automatically recognize environmental conservation content in low-resource languages. NewsSerow is a pipeline of summarization, in-context few-shot classification, and self-reflection using large language models (LLMs). Using at most 10 demonstration example news articles in Nepali, NewsSerow significantly outperforms other few-shot methods and achieves comparable performance with models fully fine-tuned using thousands of examples. The World Wide Fund for Nature (WWF) has deployed NewsSerow for media monitoring in Nepal, significantly reducing their operational burden, and ensuring that AI tools for conservation actually reach the communities that need them the most. NewsSerow has also been deployed for countries with other languages like Colombia.

cs.CL↗

arXiv2024

Towards Enabling Cardiac Digital Twins of Myocardial Infarction Using Deep Computational Models for Inverse Inference

Cardiac digital twins (CDTs) have the potential to offer individualized evaluation of cardiac function in a non-invasive manner, making them a promising approach for personalized diagnosis and treatment planning of my-ocardial infarction (MI). The inference of accurate myocardial tissue properties is crucial in creating a reliable CDT of MI. In this work, we investigate the feasibility of inferring myocardial tissue properties from the electrocardiogram (ECG) within a CDT platform. The platform integrates multi-modal data, such as cardiac MRI and ECG, to enhance the accuracy and reliability of the inferred tissue properties. We perform a sensitivity analysis based on computer simulations, systematically exploring the effects of infarct location, size, degree of transmurality, and electrical ac-tivity alteration on the simulated QRS complex of ECG, to establish the limits of the approach. We subsequently present a novel deep computational model, comprising a dual-branch variational autoencoder and an inference model, to infer infarct location and distribution from the simulated QRS. The proposed model achieves mean Dice scores of 0.457 \pm 0.317 and 0.302 \pm 0.273 for the inference of left ventricle scars and border zone, respectively. The sensitivity analysis enhances our understanding of the complex relationship between infarct characteristics and electrophysiological features. The in silico experimental results show that the model can effectively capture the relationship for the inverse inference, with promising potential for clinical application in the future. The code will be released publicly once the manuscript is accepted for publication.

eess.SP↗

arXiv2024

Improving Factual Error Correction for Abstractive Summarization via Data Distillation and Conditional-generation Cloze

Improving factual consistency in abstractive summarization has been a focus of current research. One promising approach is the post-editing method. However, previous works have yet to make sufficient use of factual factors in summaries and suffers from the negative effect of the training datasets. In this paper, we first propose a novel factual error correction model FactCloze based on a conditional-generation cloze task. FactCloze can construct the causality among factual factors while being able to determine whether the blank can be answered or not. Then, we propose a data distillation method to generate a more faithful summarization dataset SummDSC via multiple-dimensional evaluation. We experimentally validate the effectiveness of our approach, which leads to an improvement in multiple factual consistency metrics compared to baselines.

cs.CL↗

arXiv2024

Tool-Augmented Reward Modeling

Reward modeling (a.k.a., preference modeling) is instrumental for aligning large language models with human preferences, particularly within the context of reinforcement learning from human feedback (RLHF). While conventional reward models (RMs) have exhibited remarkable scalability, they oft struggle with fundamental functionality such as arithmetic computation, code execution, and factual lookup. In this paper, we propose a tool-augmented preference modeling approach, named Themis, to address these limitations by empowering RMs with access to external environments, including calculators and search engines. This approach not only fosters synergy between tool utilization and reward grading but also enhances interpretive capacity and scoring reliability. Our study delves into the integration of external tools into RMs, enabling them to interact with diverse external sources and construct task-specific tool engagement and reasoning traces in an autoregressive manner. We validate our approach across a wide range of domains, incorporating seven distinct external tools. Our experimental results demonstrate a noteworthy overall improvement of 17.7% across eight tasks in preference ranking. Furthermore, our approach outperforms Gopher 280B by 7.3% on TruthfulQA task in zero-shot evaluation. In human evaluations, RLHF trained with Themis attains an average win rate of 32% when compared to baselines across four distinct tasks. Additionally, we provide a comprehensive collection of tool-related RM datasets, incorporating data from seven distinct tool APIs, totaling 15,000 instances. We have made the code, data, and model checkpoints publicly available to facilitate and inspire further research advancements\footnote{\url{https://github.com/ernie-research/Tool-Augmented-Reward-Model}}.

cs.CL↗

arXiv2024

Progress and Opportunities of Foundation Models in Bioinformatics

Bioinformatics has witnessed a paradigm shift with the increasing integration of artificial intelligence (AI), particularly through the adoption of foundation models (FMs). These AI techniques have rapidly advanced, addressing historical challenges in bioinformatics such as the scarcity of annotated data and the presence of data noise. FMs are particularly adept at handling large-scale, unlabeled data, a common scenario in biological contexts due to the time-consuming and costly nature of experimentally determining labeled data. This characteristic has allowed FMs to excel and achieve notable results in various downstream validation tasks, demonstrating their ability to represent diverse biological entities effectively. Undoubtedly, FMs have ushered in a new era in computational biology, especially in the realm of deep learning. The primary goal of this survey is to conduct a systematic investigation and summary of FMs in bioinformatics, tracing their evolution, current research status, and the methodologies employed. Central to our focus is the application of FMs to specific biological problems, aiming to guide the research community in choosing appropriate FMs for their research needs. We delve into the specifics of the problem at hand including sequence analysis, structure prediction, function annotation, and multimodal integration, comparing the structures and advancements against traditional methods. Furthermore, the review analyses challenges and limitations faced by FMs in biology, such as data noise, model explainability, and potential biases. Finally, we outline potential development paths and strategies for FMs in future biological research, setting the stage for continued innovation and application in this rapidly evolving field. This comprehensive review serves not only as an academic resource but also as a roadmap for future explorations and applications of FMs in biology.

q-bio.QM↗

arXiv2024

Ada-Retrieval: An Adaptive Multi-Round Retrieval Paradigm for Sequential Recommendations

Retrieval models aim at selecting a small set of item candidates which match the preference of a given user. They play a vital role in large-scale recommender systems since subsequent models such as rankers highly depend on the quality of item candidates. However, most existing retrieval models employ a single-round inference paradigm, which may not adequately capture the dynamic nature of user preferences and stuck in one area in the item space. In this paper, we propose Ada-Retrieval, an adaptive multi-round retrieval paradigm for recommender systems that iteratively refines user representations to better capture potential candidates in the full item space. Ada-Retrieval comprises two key modules: the item representation adapter and the user representation adapter, designed to inject context information into items' and users' representations. The framework maintains a model-agnostic design, allowing seamless integration with various backbone models such as RNNs or Transformers. We perform experiments on three widely used public datasets, incorporating five powerful sequential recommenders as backbone models. Our results demonstrate that Ada-Retrieval significantly enhances the performance of various base models, with consistent improvements observed across different datasets. Our code and data are publicly available at: https://github.com/ll0ruc/Ada-Retrieval.

cs.IR↗

arXiv2024

Red Teaming Visual Language Models

VLMs (Vision-Language Models) extend the capabilities of LLMs (Large Language Models) to accept multimodal inputs. Since it has been verified that LLMs can be induced to generate harmful or inaccurate content through specific test cases (termed as Red Teaming), how VLMs perform in similar scenarios, especially with their combination of textual and visual inputs, remains a question. To explore this problem, we present a novel red teaming dataset RTVLM, which encompasses 10 subtasks (e.g., image misleading, multi-modal jail-breaking, face fairness, etc) under 4 primary aspects (faithfulness, privacy, safety, fairness). Our RTVLM is the first red-teaming dataset to benchmark current VLMs in terms of these 4 different aspects. Detailed analysis shows that 10 prominent open-sourced VLMs struggle with the red teaming in different degrees and have up to 31% performance gap with GPT-4V. Additionally, we simply apply red teaming alignment to LLaVA-v1.5 with Supervised Fine-tuning (SFT) using RTVLM, and this bolsters the models' performance with 10% in RTVLM test set, 13% in MM-Hal, and without noticeable decline in MM-Bench, overpassing other LLaVA-based models with regular alignment data. This reveals that current open-sourced VLMs still lack red teaming alignment. Our code and datasets will be open-source.

cs.AI↗

arXiv2024

Developing ChatGPT for Biology and Medicine: A Complete Review of Biomedical Question Answering

ChatGPT explores a strategic blueprint of question answering (QA) in delivering medical diagnosis, treatment recommendations, and other healthcare support. This is achieved through the increasing incorporation of medical domain data via natural language processing (NLP) and multimodal paradigms. By transitioning the distribution of text, images, videos, and other modalities from the general domain to the medical domain, these techniques have expedited the progress of medical domain question answering (MDQA). They bridge the gap between human natural language and sophisticated medical domain knowledge or expert manual annotations, handling large-scale, diverse, unbalanced, or even unlabeled data analysis scenarios in medical contexts. Central to our focus is the utilizing of language models and multimodal paradigms for medical question answering, aiming to guide the research community in selecting appropriate mechanisms for their specific medical research requirements. Specialized tasks such as unimodal-related question answering, reading comprehension, reasoning, diagnosis, relation extraction, probability modeling, and others, as well as multimodal-related tasks like vision question answering, image caption, cross-modal retrieval, report summarization, and generation, are discussed in detail. Each section delves into the intricate specifics of the respective method under consideration. This paper highlights the structures and advancements of medical domain explorations against general domain methods, emphasizing their applications across different tasks and datasets. It also outlines current challenges and opportunities for future medical domain research, paving the way for continued innovation and application in this rapidly evolving field.

cs.CL↗

arXiv2024

Segment Anything Model for Medical Images?

The Segment Anything Model (SAM) is the first foundation model for general image segmentation. It has achieved impressive results on various natural image segmentation tasks. However, medical image segmentation (MIS) is more challenging because of the complex modalities, fine anatomical structures, uncertain and complex object boundaries, and wide-range object scales. To fully validate SAM's performance on medical data, we collected and sorted 53 open-source datasets and built a large medical segmentation dataset with 18 modalities, 84 objects, 125 object-modality paired targets, 1050K 2D images, and 6033K masks. We comprehensively analyzed different models and strategies on the so-called COSMOS 1050K dataset. Our findings mainly include the following: 1) SAM showed remarkable performance in some specific objects but was unstable, imperfect, or even totally failed in other situations. 2) SAM with the large ViT-H showed better overall performance than that with the small ViT-B. 3) SAM performed better with manual hints, especially box, than the Everything mode. 4) SAM could help human annotation with high labeling quality and less time. 5) SAM was sensitive to the randomness in the center point and tight box prompts, and may suffer from a serious performance drop. 6) SAM performed better than interactive methods with one or a few points, but will be outpaced as the number of points increases. 7) SAM's performance correlated to different factors, including boundary complexity, intensity differences, etc. 8) Finetuning the SAM on specific medical tasks could improve its average DICE performance by 4.39% and 6.68% for ViT-B and ViT-H, respectively. We hope that this comprehensive report can help researchers explore the potential of SAM applications in MIS, and guide how to appropriately use and develop SAM.

eess.IV↗

arXiv2024

DarkShot: Lighting Dark Images with Low-Compute and High-Quality

Nighttime photography encounters escalating challenges in extremely low-light conditions, primarily attributable to the ultra-low signal-to-noise ratio. For real-world deployment, a practical solution must not only produce visually appealing results but also require minimal computation. However, most existing methods are either focused on improving restoration performance or employ lightweight models at the cost of quality. This paper proposes a lightweight network that outperforms existing state-of-the-art (SOTA) methods in low-light enhancement tasks while minimizing computation. The proposed network incorporates Siamese Self-Attention Block (SSAB) and Skip-Channel Attention (SCA) modules, which enhance the model's capacity to aggregate global information and are well-suited for high-resolution images. Additionally, based on our analysis of the low-light image restoration process, we propose a Two-Stage Framework that achieves superior results. Our model can restore a UHD 4K resolution image with minimal computation while keeping SOTA restoration quality.

cs.CV↗

arXiv2024

Functional Geometry Guided Protein Sequence and Backbone Structure Co-Design

Proteins are macromolecules responsible for essential functions in almost all living organisms. Designing reasonable proteins with desired functions is crucial. A protein's sequence and structure are strongly correlated and they together determine its function. In this paper, we propose NAEPro, a model to jointly design Protein sequence and structure based on automatically detected functional sites. NAEPro is powered by an interleaving network of attention and equivariant layers, which can capture global correlation in a whole sequence and local influence from nearest amino acids in three dimensional (3D) space. Such an architecture facilitates effective yet economic message passing at two levels. We evaluate our model and several strong baselines on two protein datasets, $β$-lactamase and myoglobin. Experimental results show that our model consistently achieves the highest amino acid recovery rate, TM-score, and the lowest RMSD among all competitors. These findings prove the capability of our model to design protein sequences and structures that closely resemble their natural counterparts. Furthermore, in-depth analysis further confirms our model's ability to generate highly effective proteins capable of binding to their target metallocofactors. We provide code, data and models in Github.

cs.LG↗

arXiv2024

A multi-objective optimization framework for terrain modification based on a combined hydrological and earthwork cost-benefit

The escalating risk of urban inundation has drawn increased attention to urban stormwater management. This study proposes a multi-objective optimization for terrain modification, combining the Non-dominated Sorting Genetic Algorithm II (NSGA-II) with digital elevation model (DEM)-based hydrological cost factor analysis. To reduce the precipitation erosive forces and runoff kinetic energy, the resulting framework offers the possibility of efficiently searching numerous solutions for trade-off sets that meet three conflicting objectives: minimizing maximum flow velocity, maximizing runoff path length and minimizing earthwork costs. Our application case study in Høje Taastrup, Denmark, demonstrates the ability of the optimization framework to iteratively generate diversified modification scenarios, which form the reference for topography planning. The three individual objective preferred solutions, a balanced solution, and twenty solutions under regular ordering are selected and visualized to determine the limits of the optimization and the cost-effectiveness tendency. Integrating genetic algorithms with DEM-based hydrological analysis demonstrates the potential to consider more complicated hydrological benefit objectives with open-ended characteristics. It provides a novel and efficient way to optimize topographic characteristics for improving holistic stormwater management strategies.

cs.CE↗

arXiv2024

Some Grönwall inequalities for a class of discretizations of time fractional equations on nonuniform meshes

We consider the completely positive discretizations of fractional ordinary differential equations (FODEs) on nonuniform meshes. Making use of the resolvents for nonuniform meshes, we first establish comparison principles for the discretizations. Then we prove some discrete Grönwall inequalities using the comparison principles and careful analysis of the solutions to the time continuous FODEs. Our results do not have any restrictions on the step size ratio. The Grönwall inequalities for dissipative equations can be used to obtain the uniform-in-time error control and decay estimates of the numerical solutions. The Grönwall inequalities are then applied to subdiffusion problems and the time fractional Allen-Cahn equations for illustration.

math.NA↗

arXiv2023

FETV: A Benchmark for Fine-Grained Evaluation of Open-Domain Text-to-Video Generation

Recently, open-domain text-to-video (T2V) generation models have made remarkable progress. However, the promising results are mainly shown by the qualitative cases of generated videos, while the quantitative evaluation of T2V models still faces two critical problems. Firstly, existing studies lack fine-grained evaluation of T2V models on different categories of text prompts. Although some benchmarks have categorized the prompts, their categorization either only focuses on a single aspect or fails to consider the temporal information in video generation. Secondly, it is unclear whether the automatic evaluation metrics are consistent with human standards. To address these problems, we propose FETV, a benchmark for Fine-grained Evaluation of Text-to-Video generation. FETV is multi-aspect, categorizing the prompts based on three orthogonal aspects: the major content, the attributes to control and the prompt complexity. FETV is also temporal-aware, which introduces several temporal categories tailored for video generation. Based on FETV, we conduct comprehensive manual evaluations of four representative T2V models, revealing their pros and cons on different categories of prompts from different aspects. We also extend FETV as a testbed to evaluate the reliability of automatic T2V metrics. The multi-aspect categorization of FETV enables fine-grained analysis of the metrics' reliability in different scenarios. We find that existing automatic metrics (e.g., CLIPScore and FVD) correlate poorly with human evaluation. To address this problem, we explore several solutions to improve CLIPScore and FVD, and develop two automatic metrics that exhibit significant higher correlation with humans than existing metrics. Benchmark page: https://github.com/llyx97/FETV.

cs.CV↗

arXiv2023

Non-equilibrium-diffusion limit of the compressible Euler radiation model

We justify rigorously the non-equilibrium-diffusion limit of the compressible Euler model coupled with a radiative transfer equation arising in radiation hydrodynamics. For general initial data, we establish the uniform existence of the solution to the coupled model in $\mathbb{T}^{3}$ and prove the convergence of the solutions to the limiting system in the nonequilibrium-diffusion regime. Moreover, the initial layer for the radiative density is constructed to get the strong convergence in $L^\infty$ norm.

math.AP↗

arXiv2023

Label Words are Anchors: An Information Flow Perspective for Understanding In-Context Learning

In-context learning (ICL) emerges as a promising capability of large language models (LLMs) by providing them with demonstration examples to perform diverse tasks. However, the underlying mechanism of how LLMs learn from the provided context remains under-explored. In this paper, we investigate the working mechanism of ICL through an information flow lens. Our findings reveal that label words in the demonstration examples function as anchors: (1) semantic information aggregates into label word representations during the shallow computation layers' processing; (2) the consolidated information in label words serves as a reference for LLMs' final predictions. Based on these insights, we introduce an anchor re-weighting method to improve ICL performance, a demonstration compression technique to expedite inference, and an analysis framework for diagnosing ICL errors in GPT2-XL. The promising applications of our findings again validate the uncovered ICL working mechanism and pave the way for future studies.

cs.CL↗

arXiv2023

Silkie: Preference Distillation for Large Visual Language Models

This paper explores preference distillation for large vision language models (LVLMs), improving their ability to generate helpful and faithful responses anchoring the visual context. We first build a vision-language feedback (VLFeedback) dataset utilizing AI annotation. Specifically, responses are generated by models sampled from 12 LVLMs, conditioned on multi-modal instructions sourced from various datasets. We adopt GPT-4V to assess the generated outputs regarding helpfulness, visual faithfulness, and ethical considerations. Furthermore, the preference supervision is distilled into Qwen-VL-Chat through the direct preference optimization (DPO) method. The resulting model Silkie, achieves 6.9% and 9.5% relative improvement on the MME benchmark regarding the perception and cognition capabilities, respectively. Silkie also demonstrates reduced hallucination by setting a new state-of-the-art score of 3.02 on the MMHal-Bench benchmark. Further analysis shows that DPO with our VLFeedback dataset mainly boosts the fine-grained perception and complex cognition abilities of LVLMs, leading to more comprehensive improvements compared to human-annotated preference datasets.

cs.CV↗