arXiv subjects

Li Lin

Publications and source records attributed to Li Lin.

At least 73 records · Page 4Linked to original sources

arXiv2024

PRIOR: Prototype Representation Joint Learning from Medical Images and Reports

Contrastive learning based vision-language joint pre-training has emerged as a successful representation learning strategy. In this paper, we present a prototype representation learning framework incorporating both global and local alignment between medical images and reports. In contrast to standard global multi-modality alignment methods, we employ a local alignment module for fine-grained representation. Furthermore, a cross-modality conditional reconstruction module is designed to interchange information across modalities in the training phase by reconstructing masked images and reports. For reconstructing long reports, a sentence-wise prototype memory bank is constructed, enabling the network to focus on low-level localized visual and high-level clinical linguistic features. Additionally, a non-auto-regressive generation paradigm is proposed for reconstructing non-sequential reports. Experimental results on five downstream tasks, including supervised classification, zero-shot classification, image-to-text retrieval, semantic segmentation, and object detection, show the proposed method outperforms other state-of-the-art methods across multiple datasets and under different dataset size settings. The code is available at https://github.com/QtacierP/PRIOR.

cs.CV↗

arXiv2024

Preserving Fairness Generalization in Deepfake Detection

Although effective deepfake detection models have been developed in recent years, recent studies have revealed that these models can result in unfair performance disparities among demographic groups, such as race and gender. This can lead to particular groups facing unfair targeting or exclusion from detection, potentially allowing misclassified deepfakes to manipulate public opinion and undermine trust in the model. The existing method for addressing this problem is providing a fair loss function. It shows good fairness performance for intra-domain evaluation but does not maintain fairness for cross-domain testing. This highlights the significance of fairness generalization in the fight against deepfakes. In this work, we propose the first method to address the fairness generalization problem in deepfake detection by simultaneously considering features, loss, and optimization aspects. Our method employs disentanglement learning to extract demographic and domain-agnostic forgery features, fusing them to encourage fair learning across a flattened loss landscape. Extensive experiments on prominent deepfake datasets demonstrate our method's effectiveness, surpassing state-of-the-art approaches in preserving fairness during cross-domain deepfake detection. The code is available at https://github.com/Purdue-M2/Fairness-Generalization

cs.CV↗

arXiv2024

Quantum Probability Theoretic Asset Return Modeling: A Novel Schrödinger-Like Trading Equation and Multimodal Distribution

Quantum theory provides a comprehensive framework for quantifying uncertainty, often applied in quantum finance to explore the stochastic nature of asset returns. This perspective likens returns to microscopic particle motion, governed by quantum probabilities akin to physical laws. However, such approaches presuppose specific microscopic quantum effects in return changes, a premise criticized for lack of guarantee. This paper diverges by asserting that quantum probability is a mathematical extension of classical probability to complex numbers. It isn't exclusively tied to microscopic quantum phenomena, bypassing the need for quantum effects in returns.By directly linking quantum probability's mathematical structure to traders' decisions and market behaviors, it avoids assuming quantum effects for returns and invoking the wave function. The complex phase of quantum probability, capturing transitions between long and short decisions while considering information interaction among traders, offers an inherent advantage over classical probability in characterizing the multimodal distribution of asset returns.Utilizing Fourier decomposition, we derive a Schrödinger-like trading equation, where each term explicitly corresponds to implications of market trading. The equation indicates discrete energy levels in financial trading, with returns following a normal distribution at the lowest level. As the market transitions to higher trading levels, a phase shift occurs in the return distribution, leading to multimodality and fat tails. Empirical research on the Chinese stock market supports the existence of energy levels and multimodal distributions derived from this quantum probability asset returns model.

q-fin.MF↗

arXiv2023

Unlock the Power: Competitive Distillation for Multi-Modal Large Language Models

Recently, multi-modal content generation has attracted lots of attention from researchers by investigating the utilization of visual instruction tuning based on large language models (LLMs). To enhance the performance and generalization ability of such LLMs, the practice of distilling knowledge from pretrained multi-modal models (a.k.a. teachers) to more compact multi-modal LLMs (students) has gained considerable interest. However, the prevailing paradigm of instructiontuning in multi-modal LLMs knowledge distillation is resource-intensive and unidirectional, neglecting the potential for mutual feedback between the student and teacher models. Thus, we propose an innovative Competitive Multi-modal Distillation framework (CoMD), which captures bidirectional feedback between teacher and student models and continually updates the multi-modal capabilities that the student model has learned. It comprises two stages: multi-modal pre-training and multi-modal competitive distillation. The first stage pre-trains the student model on a large number of filtered multi-modal datasets. The second stage facilitates a bidirectional knowledge transfer between the student and teacher models. Our experimental analysis of diverse datasets shows that our knowledge transfer method consistently improves the capabilities of the student model. Finally, the 7B-sized student model after four distillations surpassed the current state-of-the-art model LLaVA-13B on the ScienceQA and LLaVA Test dataset, also outperforms other strong baselines in the zero-shot setting.

cs.CV↗

arXiv2023

YoloCurvSeg: You Only Label One Noisy Skeleton for Vessel-style Curvilinear Structure Segmentation

Weakly-supervised learning (WSL) has been proposed to alleviate the conflict between data annotation cost and model performance through employing sparsely-grained (i.e., point-, box-, scribble-wise) supervision and has shown promising performance, particularly in the image segmentation field. However, it is still a very challenging task due to the limited supervision, especially when only a small number of labeled samples are available. Additionally, almost all existing WSL segmentation methods are designed for star-convex structures which are very different from curvilinear structures such as vessels and nerves. In this paper, we propose a novel sparsely annotated segmentation framework for curvilinear structures, named YoloCurvSeg. A very essential component of YoloCurvSeg is image synthesis. Specifically, a background generator delivers image backgrounds that closely match the real distributions through inpainting dilated skeletons. The extracted backgrounds are then combined with randomly emulated curves generated by a Space Colonization Algorithm-based foreground generator and through a multilayer patch-wise contrastive learning synthesizer. In this way, a synthetic dataset with both images and curve segmentation labels is obtained, at the cost of only one or a few noisy skeleton annotations. Finally, a segmenter is trained with the generated dataset and possibly an unlabeled dataset. The proposed YoloCurvSeg is evaluated on four publicly available datasets (OCTA500, CORN, DRIVE and CHASEDB1) and the results show that YoloCurvSeg outperforms state-of-the-art WSL segmentation methods by large margins. With only one noisy skeleton annotation (respectively 0.14\%, 0.03\%, 1.40\%, and 0.65\% of the full annotation), YoloCurvSeg achieves more than 97\% of the fully-supervised performance on each dataset. Code and datasets will be released at https://github.com/llmir/YoloCurvSeg.

cs.CV↗

arXiv2023

Single-shot 3D photoacoustic computed tomography with a densely packed array for transcranial functional imaging

Photoacoustic computed tomography (PACT) is emerging as a new technique for functional brain imaging, primarily due to its capabilities in label-free hemodynamic imaging. Despite its potential, the transcranial application of PACT has encountered hurdles, such as acoustic attenuations and distortions by the skull and limited light penetration through the skull. To overcome these challenges, we have engineered a PACT system that features a densely packed hemispherical ultrasonic transducer array with 3072 channels, operating at a central frequency of 1 MHz. This system allows for single-shot 3D imaging at a rate equal to the laser repetition rate, such as 20 Hz. We have achieved a single-shot light penetration depth of approximately 9 cm in chicken breast tissue utilizing a 750 nm laser (withstanding 3295-fold light attenuation and still retaining an SNR of 74) and successfully performed transcranial imaging through an ex vivo human skull using a 1064 nm laser. Moreover, we have proven the capacity of our system to perform single-shot 3D PACT imaging in both tissue phantoms and human subjects. These results suggest that our PACT system is poised to unlock potential for real-time, in vivo transcranial functional imaging in humans.

physics.med-ph↗

arXiv2023

The inverse Cox-Ingersoll-Ross process for parsimonious financial price modeling

We propose a formulation to construct new classes of financial price processes based on the insight that the key variable driving prices $P$ is the earning-over-price ratio $γ\simeq 1/P$, which we refer to as the earning yield and is analogous to the yield-to-maturity of an equivalent perpetual bond. This modeling strategy is illustrated with the choice for real-time $γ$ in the form of the Cox-Ingersoll-Ross (CIR) process, which allows us to derive analytically many stylised facts of financial prices and returns, such as the power law distribution of returns, transient super-exponential bubble behavior, and the fat-tailed distribution of prices before bubbles burst. Our model sheds new light on rationalizing the excess volatility and the equity premium puzzles. The model is calibrated to five well-known historical bubbles in the US and China stock markets via a quasi-maximum likelihood method with the L-BFGS-B optimization algorithm. Using $ϕ$-divergence statistics adapted to models prescribed in terms of stochastic differential equations, we show the superiority of the CIR process for $γ_t$ against three alternative models.

q-fin.MF↗

arXiv2023

JOINEDTrans: Prior Guided Multi-task Transformer for Joint Optic Disc/Cup Segmentation and Fovea Detection

Deep learning-based image segmentation and detection models have largely improved the efficiency of analyzing retinal landmarks such as optic disc (OD), optic cup (OC), and fovea. However, factors including ophthalmic disease-related lesions and low image quality issues may severely complicate automatic OD/OC segmentation and fovea detection. Most existing works treat the identification of each landmark as a single task, and take into account no prior information. To address these issues, we propose a prior guided multi-task transformer framework for joint OD/OC segmentation and fovea detection, named JOINEDTrans. JOINEDTrans effectively combines various spatial features of the fundus images, relieving the structural distortions induced by lesions and other imaging issues. It contains a segmentation branch and a detection branch. To be noted, we employ an encoder pretrained in a vessel segmentation task to effectively exploit the positional relationship among vessel, OD/OC, and fovea, successfully incorporating spatial prior into the proposed JOINEDTrans framework. There are a coarse stage and a fine stage in JOINEDTrans. In the coarse stage, OD/OC coarse segmentation and fovea heatmap localization are obtained through a joint segmentation and detection module. In the fine stage, we crop regions of interest for subsequent refinement and use predictions obtained in the coarse stage to provide additional information for better performance and faster convergence. Experimental results demonstrate that JOINEDTrans outperforms existing state-of-the-art methods on the publicly available GAMMA, REFUGE, and PALM fundus image datasets. We make our code available at https://github.com/HuaqingHe/JOINEDTrans

eess.IV↗

arXiv2023

Unifying and Personalizing Weakly-supervised Federated Medical Image Segmentation via Adaptive Representation and Aggregation

Federated learning (FL) enables multiple sites to collaboratively train powerful deep models without compromising data privacy and security. The statistical heterogeneity (e.g., non-IID data and domain shifts) is a primary obstacle in FL, impairing the generalization performance of the global model. Weakly supervised segmentation, which uses sparsely-grained (i.e., point-, bounding box-, scribble-, block-wise) supervision, is increasingly being paid attention to due to its great potential of reducing annotation costs. However, there may exist label heterogeneity, i.e., different annotation forms across sites. In this paper, we propose a novel personalized FL framework for medical image segmentation, named FedICRA, which uniformly leverages heterogeneous weak supervision via adaptIve Contrastive Representation and Aggregation. Concretely, to facilitate personalized modeling and to avoid confusion, a channel selection based site contrastive representation module is employed to adaptively cluster intra-site embeddings and separate inter-site ones. To effectively integrate the common knowledge from the global model with the unique knowledge from each local model, an adaptive aggregation module is applied for updating and initializing local models at the element level. Additionally, a weakly supervised objective function that leverages a multiscale tree energy loss and a gated CRF loss is employed to generate more precise pseudo-labels and further boost the segmentation performance. Through extensive experiments on two distinct medical image segmentation tasks of different modalities, the proposed FedICRA demonstrates overwhelming performance over other state-of-the-art personalized FL methods. Its performance even approaches that of fully supervised training on centralized data. Our code and data are available at https://github.com/llmir/FedICRA.

eess.IV↗

arXiv2023

Learning Enhancement From Degradation: A Diffusion Model For Fundus Image Enhancement

The quality of a fundus image can be compromised by numerous factors, many of which are challenging to be appropriately and mathematically modeled. In this paper, we introduce a novel diffusion model based framework, named Learning Enhancement from Degradation (LED), for enhancing fundus images. Specifically, we first adopt a data-driven degradation framework to learn degradation mappings from unpaired high-quality to low-quality images. We then apply a conditional diffusion model to learn the inverse enhancement process in a paired manner. The proposed LED is able to output enhancement results that maintain clinically important features with better clarity. Moreover, in the inference phase, LED can be easily and effectively integrated with any existing fundus image enhancement framework. We evaluate the proposed LED on several downstream tasks with respect to various clinically-relevant metrics, successfully demonstrating its superiority over existing state-of-the-art methods both quantitatively and qualitatively. The source code is available at https://github.com/QtacierP/LED.

eess.IV↗

arXiv2023

UNO-QA: An Unsupervised Anomaly-Aware Framework with Test-Time Clustering for OCTA Image Quality Assessment

Medical image quality assessment (MIQA) is a vital prerequisite in various medical image analysis applications. Most existing MIQA algorithms are fully supervised that request a large amount of annotated data. However, annotating medical images is time-consuming and labor-intensive. In this paper, we propose an unsupervised anomaly-aware framework with test-time clustering for optical coherence tomography angiography (OCTA) image quality assessment in a setting wherein only a set of high-quality samples are accessible in the training phase. Specifically, a feature-embedding-based low-quality representation module is proposed to quantify the quality of OCTA images and then to discriminate between outstanding quality and non-outstanding quality. Within the non-outstanding quality class, to further distinguish gradable images from ungradable ones, we perform dimension reduction and clustering of multi-scale image features extracted by the trained OCTA quality representation network. Extensive experiments are conducted on one publicly accessible dataset sOCTA-3*3-10k, with superiority of our proposed framework being successfully established.

cs.CV↗

arXiv2022

GAMMA Challenge:Glaucoma grAding from Multi-Modality imAges

Color fundus photography and Optical Coherence Tomography (OCT) are the two most cost-effective tools for glaucoma screening. Both two modalities of images have prominent biomarkers to indicate glaucoma suspected. Clinically, it is often recommended to take both of the screenings for a more accurate and reliable diagnosis. However, although numerous algorithms are proposed based on fundus images or OCT volumes in computer-aided diagnosis, there are still few methods leveraging both of the modalities for the glaucoma assessment. Inspired by the success of Retinal Fundus Glaucoma Challenge (REFUGE) we held previously, we set up the Glaucoma grAding from Multi-Modality imAges (GAMMA) Challenge to encourage the development of fundus \& OCT-based glaucoma grading. The primary task of the challenge is to grade glaucoma from both the 2D fundus images and 3D OCT scanning volumes. As part of GAMMA, we have publicly released a glaucoma annotated dataset with both 2D fundus color photography and 3D OCT volumes, which is the first multi-modality dataset for glaucoma grading. In addition, an evaluation framework is also established to evaluate the performance of the submitted methods. During the challenge, 1272 results were submitted, and finally, top-10 teams were selected to the final stage. We analysis their results and summarize their methods in the paper. Since all these teams submitted their source code in the challenge, a detailed ablation study is also conducted to verify the effectiveness of the particular modules proposed. We find many of the proposed techniques are practical for the clinical diagnosis of glaucoma. As the first in-depth study of fundus \& OCT multi-modality glaucoma grading, we believe the GAMMA Challenge will be an essential starting point for future research.

cs.CV↗

arXiv2022

A spectral collocation method for elliptic PDEs in irregular domains with Fourier extension

Based on the Fourier extension, we propose an oversampling collocation method for solving the elliptic partial differential equations with variable coefficients over arbitrary irregular domains. This method only uses the function values on the equispaced nodes, which has low computational cost and versatility. While a variety of numerical experiments are presented to demonstrate the effectiveness of this method, it shows that the approximation error fast reaches a plateau with increasing the degrees of freedom, due to the inherent ill-conditioned of frames.

math.NA↗

arXiv2022

Character-level White-Box Adversarial Attacks against Transformers via Attachable Subwords Substitution

We propose the first character-level white-box adversarial attack method against transformer models. The intuition of our method comes from the observation that words are split into subtokens before being fed into the transformer models and the substitution between two close subtokens has a similar effect to the character modification. Our method mainly contains three steps. First, a gradient-based method is adopted to find the most vulnerable words in the sentence. Then we split the selected words into subtokens to replace the origin tokenization result from the transformer tokenizer. Finally, we utilize an adversarial loss to guide the substitution of attachable subtokens in which the Gumbel-softmax trick is introduced to ensure gradient propagation. Meanwhile, we introduce the visual and length constraint in the optimization process to achieve minimum character modifications. Extensive experiments on both sentence-level and token-level tasks demonstrate that our method could outperform the previous attack methods in terms of success rate and edit distance. Furthermore, human evaluation verifies our adversarial examples could preserve their origin labels.

cs.CL↗

arXiv2022

Identifying the key components in ResNet-50 for diabetic retinopathy grading from fundus images: a systematic investigation

Although deep learning based diabetic retinopathy (DR) classification methods typically benefit from well-designed architectures of convolutional neural networks, the training setting also has a non-negligible impact on the prediction performance. The training setting includes various interdependent components, such as objective function, data sampling strategy and data augmentation approach. To identify the key components in a standard deep learning framework (ResNet-50) for DR grading, we systematically analyze the impact of several major components. Extensive experiments are conducted on a publicly-available dataset EyePACS. We demonstrate that (1) the DR grading framework is sensitive to input resolution, objective function, and composition of data augmentation, (2) using mean square error as the loss function can effectively improve the performance with respect to a task-specific evaluation metric, namely the quadratically-weighted Kappa, (3) utilizing eye pairs boosts the performance of DR grading and (4) using data resampling to address the problem of imbalanced data distribution in EyePACS hurts the performance. Based on these observations and an optimal combination of the investigated components, our framework, without any specialized network design, achieves the state-of-the-art result (0.8631 for Kappa) on the EyePACS test set (a total of 42670 fundus images) with only image-level labels. We also examine the proposed training practices on other fundus datasets and other network architectures to evaluate their generalizability. Our codes and pre-trained model are available at https://github.com/YijinHuang/pytorch-classification.

eess.IV↗

arXiv2022

Student Becomes Decathlon Master in Retinal Vessel Segmentation via Dual-teacher Multi-target Domain Adaptation

Unsupervised domain adaptation has been proposed recently to tackle the so-called domain shift between training data and test data with different distributions. However, most of them only focus on single-target domain adaptation and cannot be applied to the scenario with multiple target domains. In this paper, we propose RVms, a novel unsupervised multi-target domain adaptation approach to segment retinal vessels (RVs) from multimodal and multicenter retinal images. RVms mainly consists of a style augmentation and transfer (SAT) module and a dual-teacher knowledge distillation (DTKD) module. SAT augments and clusters images into source-similar domains and source-dissimilar domains via Bezier and Fourier transformations. DTKD utilizes the augmented and transformed data to train two teachers, one for source-similar domains and the other for source-dissimilar domains. Afterwards, knowledge distillation is performed to iteratively distill different domain knowledge from teachers to a generic student. The local relative intensity transformation is employed to characterize RVs in a domain invariant manner and promote the generalizability of teachers and student models. Moreover, we construct a new multimodal and multicenter vascular segmentation dataset from existing publicly-available datasets, which can be used to benchmark various domain adaptation and domain generalization methods. Through extensive experiments, RVms is found to be very close to the target-trained Oracle in terms of segmenting the RVs, largely outperforming other state-of-the-art methods.

eess.IV↗

arXiv2022

What Makes the Story Forward? Inferring Commonsense Explanations as Prompts for Future Event Generation

Prediction over event sequences is critical for many real-world applications in Information Retrieval and Natural Language Processing. Future Event Generation (FEG) is a challenging task in event sequence prediction because it requires not only fluent text generation but also commonsense reasoning to maintain the logical coherence of the entire event story. In this paper, we propose a novel explainable FEG framework, Coep. It highlights and integrates two types of event knowledge, sequential knowledge of direct event-event relations and inferential knowledge that reflects the intermediate character psychology between events, such as intents, causes, reactions, which intrinsically pushes the story forward. To alleviate the knowledge forgetting issue, we design two modules, Im and Gm, for each type of knowledge, which are combined via prompt tuning. First, Im focuses on understanding inferential knowledge to generate commonsense explanations and provide a soft prompt vector for Gm. We also design a contrastive discriminator for better generalization ability. Second, Gm generates future events by modeling direct sequential knowledge with the guidance of Im. Automatic and human evaluation demonstrate that our approach can generate more coherent, specific, and logical future events.

cs.CL↗

arXiv2022

Semantic Enhanced Text-to-SQL Parsing via Iteratively Learning Schema Linking Graph

The generalizability to new databases is of vital importance to Text-to-SQL systems which aim to parse human utterances into SQL statements. Existing works achieve this goal by leveraging the exact matching method to identify the lexical matching between the question words and the schema items. However, these methods fail in other challenging scenarios, such as the synonym substitution in which the surface form differs between the corresponding question words and schema items. In this paper, we propose a framework named ISESL-SQL to iteratively build a semantic enhanced schema-linking graph between question tokens and database schemas. First, we extract a schema linking graph from PLMs through a probing procedure in an unsupervised manner. Then the schema linking graph is further optimized during the training process through a deep graph learning method. Meanwhile, we also design an auxiliary task called graph regularization to improve the schema information mentioned in the schema-linking graph. Extensive experiments on three benchmarks demonstrate that ISESL-SQL could consistently outperform the baselines and further investigations show its generalizability and robustness.

cs.CL↗