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Li Shen

Publications and source records attributed to Li Shen.

At least 37 records · Page 2Linked to original sources

Knowledge Acquisition During Pre-training? Large Language Models Learn Better With Auxiliary Views

Gaps remain in our understanding of how large language models (LLMs) acquire knowledge during pre-training. We posit that auxiliary views, reformulations of knowledge, are causally helpful for learning. We design controlled experiments to isolate this. First, we confirm that repetition is necessary for acquisition and clarify that paraphrasing helps only at smaller batch sizes. Second, holding the token budget fixed, allocating tokens from document repetition to auxiliary views improves learning, counterintuitively, even for factual recall. Third, the effectiveness of auxiliary views is not contingent on the strength of the teacher model that generates them. Fourth, we identify forms of knowledge, contextual and foundational, that aid learning in the presence of prior knowledge gaps. Finally, we examine how these effects manifest mechanistically via layer-wise biases and compression. Together, our findings suggest that auxiliary representations of knowledge, which arise naturally in large pre-training corpora, are a key factor in the success of pre-training and offer a plausible explanation for why data diversity matters.

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Auditable CT Phenotyping Through Report-derived Radiological Observations

Medical image foundation models can predict clinical phenotypes from computed tomography (CT), but strong performance leaves open whether they read disease-specific findings or shortcuts that correlate with the diagnosis. We tested this in 221 electronic-health-record (EHR) phenotypes using Auditable CT phenotyping (ACT), built on report-derived radiological observations. We trained ACT on 38,317 patients, mined 376,194 observations and evaluated it in 25,183 held-out patients. ACT exceeded five vision-language baselines on zero-shot annotation, and CT-CLIP across 221 phenotypes from unseen CT pulmonary angiography, both under zero-shot scoring (0.651 versus 0.572) and under linear probing (0.709 versus 0.662). Reading each probe exposes what accuracy conceals: only 97 observations occupy the 221 rank-1 positions, and one phrase describing aortic and coronary calcification ranks first for 20 phenotypes, including osteoporosis, urinary tract infection and major depressive disorder. Restricting the bank to clinician-specified evidence redirects those probes onto phenotype-related observations in 86 phenotypes at no accuracy cost (0.751 versus 0.741). Accurate CT-based EHR phenotyping can therefore rest on observations that are not valid evidence for the coded phenotype and that ACT can identify and intervene on.

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Towards Efficient Pareto Set Approximation via Mixture of Experts Based Model Fusion

Solving multi-objective optimization problems for large deep neural networks is a challenging task due to the complexity of the loss landscape and the expensive computational cost of training and evaluating models. Efficient Pareto front approximation of large models enables multi-objective optimization for various tasks such as multi-task learning and trade-off analysis. Existing algorithms for learning Pareto set, including (1) evolutionary, hypernetworks, and hypervolume-maximization methods, are computationally expensive and have restricted scalability to large models; (2) Scalarization algorithms, where a separate model is trained for each objective ray, which is inefficient for learning the entire Pareto set and fails to capture the objective trade-offs effectively. Inspired by the recent success of model merging, we propose a practical and scalable approach to Pareto set learning problem via mixture of experts (MoE) based model fusion. By ensembling the weights of specialized single-task models, the MoE module can effectively capture the trade-offs between multiple objectives and closely approximate the entire Pareto set of large neural networks. Once the routers are learned and a preference vector is set, the MoE module can be unloaded, thus no additional computational cost is introduced during inference. We conduct extensive experiments on vision and language tasks using large-scale models such as CLIP-ViT and GPT-2. The experimental results demonstrate that our method efficiently approximates the entire Pareto front of large models. Using only hundreds of trainable parameters of the MoE routers, our method even has lower memory usage compared to linear scalarization and algorithms that learn a single Pareto optimal solution, and are scalable to both the number of objectives and the size of the model.

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GenFAR: A generalized representation of brain structure, derived from 49,246 multi-cohort MRIs via deep learning

Deep learning models for neuroimaging have largely been developed for individual tasks, limiting knowledge transfer across applications. Here we introduce GenFAR, a modular deep learning framework that learns general, clinically informed features from brain MRIs. We trained this modular architecture on 49,246 individuals across 11 cohorts, using 17 diverse classification and regression tasks spanning cognition, clinical, diagnosis, demographics, and biomarkers. This yields aggregated, focused feature sets that capture rich, clinically- and biologically-relevant brain representations. We developed a sequential learning approach where tasks progressively build on previously learned representations. Through an analysis of 5,000 task sequences, we identified an optimal sequence length of six tasks and introduced a Donor Score metric to quantify each task's contribution to downstream performance. This analysis revealed five consistently strong donor tasks (Age, AD/MCI, MMSE, Hypertension, Hyperlipidemia) that formed the base of our sequential model. We demonstrated the utility of our learned representation, in various tasks beyond those included in the training set, to serve as the foundation for specialized secondary predictors. We further showed that using the learned feature representation can substantially increase the sample efficiency of secondary deep learning training tasks and models, as well as improve their accuracy.

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Invertible Logits Transformation for Accuracy-Preserving Post-Hoc Uncertainty Calibration

Post-hoc calibration aligns a classifier's predicted confidences with its empirical accuracy without retraining. An ideal calibrator should correct nonlinear miscalibration, scale gracefully to large label spaces, and preserve the original predictions; existing methods typically violate at least one of these properties---temperature scaling lacks expressivity, more flexible parametric alternatives introduce parameters that grow with the number of classes $C$, and other expressive methods do not preserve the rank ordering of class scores and may alter the predicted class. We propose \textbf{Invertible Logits Transformation (InvLT)}, which applies a learned scalar MLP $f:\mathbb{R}\to\mathbb{R}$ element-wise to the pre-softmax logits. Sharing $f$ across all logit dimensions makes the parameter count independent of $C$. Monotonicity of $f$---and hence preservation of the argmax prediction---is softly encouraged via a paired inverse network rather than enforced through the numerical integration required by prior monotone calibrators; this avoids their computational overhead while empirically preserving the original classification accuracy in every setting we evaluate. Across standard image classification benchmarks and a range of architectures, InvLT consistently outperforms a broad set of post-hoc baselines on standard calibration metrics.

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PCAE: Learning Ordered Representations in Latent Space for Intrinsic Dimension Estimation via Principal Component Autoencoder

Autoencoders have long been considered a nonlinear extension of Principal Component Analysis (PCA). Prior studies have demonstrated that linear autoencoders (LAEs) can recover the ordered, axis-aligned principal components of PCA by incorporating non-uniform $\ell_2$ regularization or by adjusting the loss function. However, these approaches become insufficient in the nonlinear setting, as the remaining variance cannot be properly captured independently of the nonlinear mapping. In this work, we propose a novel autoencoder framework that integrates non-uniform variance regularization with an isometric constraint. This design serves as a natural generalization of PCA, enabling the model to preserve key advantages, such as ordered representations and variance retention, while remaining effective for nonlinear dimensionality reduction tasks.

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GradientStabilizer:Fix the Norm, Not the Gradient

Training instability in modern deep learning systems is frequently triggered by rare but extreme gradient-norm spikes, which can induce oversized parameter updates, corrupt optimizer state, and lead to slow recovery or divergence. Widely used safeguards such as gradient clipping mitigate these failures but require threshold tuning and indiscriminately truncate large updates. We propose GradientStabilizer, a lightweight, drop-in gradient transform that preserves the instantaneous gradient direction while replacing the update magnitude with a statistically stabilized estimate derived from running gradient-norm statistics. We prove that the resulting stabilized magnitude is uniformly bounded on spike steps, independent of the spike size, and show how this boundedness controls optimizer state evolution in adaptive methods. Across LLM pre-training (FP16), quantization-aware pre-training (FP4), ImageNet classification, reinforcement learning, and time-series forecasting, GradientStabilizer consistently improves training stability, widens stable learning-rate regions, and reduces divergence relative to clipping-based baselines, even substantially reducing Adam's sensitivity to weight-decay strength. Code will be released soon.

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VFAD: Variational Semantic Prompting Meets Frequency-Adaptive Representation Learning for Zero-Shot Anomaly Detection

Zero-shot anomaly detection (ZSAD) aims to detect and localize anomalies in unseen categories without access to target-specific training data. Although recent CLIP-based methods have demonstrated promising generalization through vision-language alignment, they remain limited in capturing diverse anomaly semantics and subtle local variations. To address these limitations, we propose VFAD, a unified framework that combines variational semantic prompting with frequency-adaptive representation learning. Specifically, we introduce a Variational Semantic Prompt Extractor (VSPE), which adaptively aggregates anomaly-relevant local semantics from dense patch tokens and regularizes them through a variational information bottleneck, thereby incorporating fine-grained visual cues and enabling more precise cross-modal alignment. Furthermore, we develop a Frequency-Adaptive Representation Aggregation (FARA) module that leverages wavelet-based frequency decomposition and frequency-specific expert aggregation to enhance anomaly-discriminative visual representations. By jointly strengthening semantic guidance and visual representation learning, VFAD improves both anomaly discrimination and fine-grained localization. Extensive experiments on 13 industrial and medical benchmarks demonstrate that VFAD consistently outperforms existing state-of-the-art ZSAD methods across diverse anomaly scenarios. The code will be publicly available upon publication.

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Low-Precision Training of Large Language Models: Methods, Challenges, and Opportunities

Large language models (LLMs) have achieved impressive performance across various domains. However, the substantial hardware resources required for their training present a significant barrier to efficiency and scalability. To mitigate this challenge, low-precision training techniques have been widely adopted, leading to notable advancements in training efficiency. Despite these gains, low-precision training involves several components, such as weights, activations, and gradients, each of which can be represented in different numerical formats. The resulting diversity has created a fragmented landscape in low-precision training research, making it difficult for researchers to gain a unified overview of the field. This survey provides a comprehensive review of existing low-precision training methods. To systematically organize these approaches, we categorize them into three primary groups based on their underlying numerical formats, which is a key factor influencing hardware compatibility, computational efficiency, and ease of reference for readers. The categories are (1) fixed-point and integer-based methods, (2) floating-point-based methods, and (3) customized format-based methods. Additionally, we discuss quantization-aware training approaches, which share key similarities with low-precision training during forward propagation. Beyond efficiency, we examine robustness and deployment reliability under low precision. Finally, we highlight several promising research directions to advance this field. A collection of papers discussed in this survey is provided in https://github.com/Hao840/Awesome-Low-Precision-Training.

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Mediator: Memory-efficient LLM Merging with Less Parameter Conflicts and Uncertainty Based Routing

Model merging aggregates Large Language Models (LLMs) finetuned on different tasks into a stronger one. However, parameter conflicts between models leads to performance degradation in averaging. While model routing addresses this issue by selecting individual models during inference, it imposes excessive storage and compute costs, and fails to leverage the common knowledge from different models. In this work, we observe that different layers exhibit varying levels of parameter conflicts. Building on this insight, we average layers with minimal parameter conflicts and use a novel task-level expert routing for layers with significant conflicts. To further reduce storage costs, inspired by task arithmetic sparsity, we decouple multiple fine-tuned experts into a dense expert and several sparse experts. Considering the out-of-distribution samples, we select and merge appropriate experts based on the task uncertainty of the input data. We conduct extensive experiments on both LLaMA and Qwen with varying parameter scales, and evaluate on real-world reasoning tasks. Results demonstrate that our method consistently achieves significant performance improvements while requiring less system cost.

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AdaGC: Enhancing LLM Pretraining Stability via Adaptive Gradient Clipping

Loss spikes remain a persistent obstacle in large-scale language model pretraining. While previous research has attempted to identify the root cause of loss spikes by investigating individual factors, we observe that, in practice, such spikes are typically triggered by the confluence of heterogeneous factors. Empirically, loss spikes may arise from a combination of data outliers, hardware or transient computational faults, numerical precision issues, and hyperparameter settings. Regardless of the underlying cause, these spikes manifest as unstable optimizer updates, as abnormal gradients contaminate both first- and second-moment states. In this paper, we propose a principled gradient-centric remedy: AdaGC, an adaptive per-tensor gradient clipping scheme that mitigates such contamination by bounding gradient norms relative to a tensor-wise exponential moving average of their historical clipped values. AdaGC is optimizer-agnostic, introduces negligible memory overhead, and reduces communication costs compared to GlobalGC, particularly in hybrid-parallel distributed training. Experiments on Llama-2 7B, Mixtral 8x1B, and ERNIE 10B-A1.4B demonstrate that AdaGC robustly eliminates training instabilities, consistently reducing spike scores to zero for all models and improving downstream accuracy over GlobalGC by 1.32%, 1.27%, and 2.48%, respectively. Furthermore, AdaGC seamlessly integrates with optimizers such as Muon and Lion, consistently yielding higher average accuracy and zero spike scores. The code is available at https://github.com/PaddlePaddle/PaddleFleet (see Research/AdaGC).

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From Hindsight to Foresight: Self-Encouraged Hindsight Distillation for Knowledge-based Visual Question Answering

Knowledge-based Visual Question Answering (KBVQA) necessitates external knowledge incorporation beyond cross-modal understanding. Existing KBVQA methods either utilize implicit knowledge in multimodal large language models via in-context learning or explicit knowledge via retrieval augmented generation. However, their reasoning processes remain implicit, without explicit multi-step trajectories. To address this gap, we propose a Self-Encouraged Hindsight Distillation Reasoning (HinD) framework, aiming at eliciting reasoning ability inside the MLLM by constructing a Hindsight Teacher with privileged information to teach the Foresight Student. First, we construct the Hindsight Teacher by prompting the MLLM with the reasoning target as privileged information to complete the reasoning process, obtaining Hindsight-Zero training data. Then, the Foresight Student, without knowing the answer, learns the golden trajectories from Hindsight in two ways: (1) Hindsight Distillation Fine-Tuning to self-distill the Hindsight-Zero into a modularized Chain-of-Thought Generator and a Knowledge Generator for sequential steps and discrete facts generation, respectively; (2) Knowledge Encouragement Preference Optimization to encourage the under-confident but relevant knowledge inside the MLLM and suppress the over-confident but irrelevant one. Experiments on OK-VQA and A-OKVQA validate the effectiveness of HinD, showing that HinD with 7-8B MLLM achieves superior performance without commercial model APIs or retrieved knowledge.

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ExToken: Structured Exploration for Efficient Vision-Language-Action Reinforcement Fine-tuning

Reinforcement Learning (RL) has demonstrated significant potential for improving Vision-Language-Action (VLA) models on complex manipulation tasks. However, its practical scalability remains severely limited by the substantial cost of environmental interactions. In this work, we first investigate the exploration stagnation bottleneck in current VLA-RL frameworks and reveal that trajectory diversity is fundamentally more important to sample efficiency than the sheer quantity of collected rollouts. Motivated by these insights, we introduce RL Exploration Token (ExToken), a simple yet general framework that condition VLA policies on discrete behavioral priors derived from offline demonstrations for structured exploration. By conditioning the policy on different tokens during rollout collection, ExToken encourages the agent to explore diverse behavioral modes, substantially improving state-action coverage and exploration efficiency. To bridge exploration during training with deterministic inference at deployment, ExToken further incorporates a state-conditioned token selector that adaptively predicts effective behavioral modes for unseen scenarios. Extensive experiments across simulated and real-world robotic manipulation tasks demonstrate that ExToken consistently accelerates convergence, improves task performance, and exhibits strong robustness under highly constrained interaction budgets.

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Hyper-modal Imputation Diffusion Embedding with Dual-Distillation for Federated Multimodal Knowledge Graph Completion

With the increasing multimodal knowledge privatization requirements, multimodal knowledge graphs in different institutes are usually decentralized, lacking of effective collaboration system with both stronger reasoning ability and transmission safety guarantees. In this paper, we propose the Federated Multimodal Knowledge Graph Completion (FedMKGC) task, aiming at training over federated MKGs for better predicting the missing links in clients without sharing sensitive knowledge. We propose a framework named MMFeD3-HidE for addressing multimodal uncertain unavailability and multimodal client heterogeneity challenges of FedMKGC. (1) Inside the clients, our proposed Hyper-modal Imputation Diffusion Embedding model (HidE) recovers the complete multimodal distributions from incomplete entity embeddings constrained by available modalities. (2) Among clients, our proposed Multimodal FeDerated Dual Distillation (MMFeD3) transfers knowledge mutually between clients and the server with logit and feature distillation to improve both global convergence and semantic consistency. We propose a FedMKGC benchmark for a comprehensive evaluation, consisting of a general FedMKGC backbone named MMFedE, datasets with heterogeneous multimodal information, and three groups of constructed baselines. Experiments conducted on our benchmark validate the effectiveness, semantic consistency, and convergence robustness of MMFeD3-HidE.

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CDCP: Conditional Diffusion Model with Contextual Prompts for Multi-task Offline Safe Reinforcement Learning

Multi-task offline safe reinforcement learning (RL) promises to learn a shared optimal safe policy from offline data across multiple tasks. This paradigm provides an effective means for the widespread application of RL in multi-task scenarios with high risk and interaction costs. However, the triple challenges of multi-tasking, safety constraints, and out-of-distribution (OOD) actions pose a significant hurdle for existing methods to ensure safety while maximizing reward returns. In this work, we propose a Conditional Diffusion model with Contextual Prompts (CDCP) to address these challenges. Concretely, we first rethink the requirements and challenges in current multi-task decision-making and control scenarios and establish the objectives of multi-task offline safe RL. Subsequently, we transform the multi-task constrained optimization problem into a conditional generation problem using the diffusion model. Based on this, we design a classifier-free guided cost-constraint strategy to provide flexible cost constraints and eliminate extrapolation errors from OOD actions via supervised learning. Additionally, we introduce a novel contextual prompting method to enhance multi-task representation accuracy and adaptability to unseen tasks. A gradient loss synchronization strategy is also introduced to eliminate gradient interference, improving training stability. Finally, extensive experiments demonstrate that the CDCP algorithm exhibits higher performance and safety in multi-task scenarios than the current state-of-the-art baseline methods. It meets different cost constraints without further training, providing a more flexible cost-constraint solution for the multi-task safe RL.

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Beyond Activation Alignment:The Alignment-Diversity Tradeoff in Task-Aware LLM Quantization

Mixed-precision quantization (MPQ) has become a key technique for deploying large language models under stringent memory and compute constraints. We first identify a phenomenon that we term the Perplexity Illusion: layers ranked as important by perplexity-based sensitivity show little rank correlation with those that are most influential for complex reasoning performance, with Kendall $τ\approx 0$ in our analysis. We further reveal an Alignment-Diversity Tradeoff: using only target-task calibration data can degrade post-quantization performance, whereas incorporating general-domain data stabilizes sensitivity estimation and improves robustness across tasks. Based on these observations, we propose TASA (Task-Aware Sensitivity Analysis), a two-level framework that jointly optimizes calibration-data composition and mixed-precision bit allocation. Specifically, TASA searches for a calibration-data mixture using a training-free gradient-trace alignment criterion, and then aggregates perplexity and reasoning-oriented sensitivity signals to guide both inter-layer and intra-layer bit allocation. Experiments on LLaMA-3-8B and Qwen2.5-7B reveal a precision inversion: appropriately allocated 3.5-bit models can match or surpass less task-aware 4-bit baselines. At an average precision of 3.5 bits, TASA matches or outperforms several competitive 4-bit uniform baselines in aggregate accuracy, and improves over the strongest W3 baseline on GSM8K by more than 20 absolute points on LLaMA-3-8B. These results show that calibration-data composition substantially affects task-sensitive quantization, a factor underexplored in prior work.

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FreshRetailNet-50K: A Stockout-Annotated Censored Demand Dataset for Latent Demand Recovery and Forecasting in Fresh Retail

Accurate demand estimation is critical for the retail business in guiding the inventory and pricing policies of perishable products. However, it faces fundamental challenges from censored sales data during stockouts, where unobserved demand creates systemic policy biases. Existing datasets lack the temporal resolution and annotations needed to address this censoring effect. To fill this gap, we present FreshRetailNet-50K, the first large-scale benchmark for censored demand estimation. It comprises 50,000 store-product time series of detailed hourly sales data from 898 stores in 18 major cities, encompassing 863 perishable SKUs meticulously annotated for stockout events. The hourly stock status records unique to this dataset, combined with rich contextual covariates, including promotional discounts, precipitation, and temporal features, enable innovative research beyond existing solutions. We demonstrate one such use case of two-stage demand modeling: first, we reconstruct the latent demand during stockouts using precise hourly annotations. We then leverage the recovered demand to train robust demand forecasting models in the second stage. Experimental results show that this approach achieves a 2.73% improvement in prediction accuracy while reducing the systematic demand underestimation from 7.37% to near-zero bias. With unprecedented temporal granularity and comprehensive real-world information, FreshRetailNet-50K opens new research directions in demand imputation, perishable inventory optimization, and causal retail analytics. The unique annotation quality and scale of the dataset address long-standing limitations in retail AI, providing immediate solutions and a platform for future methodological innovation. The data (https://huggingface.co/datasets/Dingdong-Inc/FreshRetailNet-50K) and code (https://github.com/Dingdong-Inc/frn-50k-baseline}) are openly released.

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Concrete Subspace Learning based Interference Elimination for Multi-task Model Fusion

Merging models fine-tuned from a common, extensively pre-trained large model but specialized for different tasks has been demonstrated as a cheap and scalable strategy to construct a multi-task model that performs well across diverse tasks. Recent research, exemplified by task arithmetic, highlights that this multi-task model can be derived through arithmetic operations on task vectors. Nevertheless, current merging techniques frequently resolve potential conflicts among parameters from task-specific models by evaluating individual attributes, such as the parameters' magnitude or sign, overlooking their collective impact on the overall functionality of the model. In this work, we propose the CONtinuous relaxation of disCRETE (Concrete) subspace learning method to identify a common low-dimensional subspace and utilize its shared information to track the interference problem without sacrificing much performance. Specifically, we model the problem as a bi-level optimization problem and introduce a meta-learning framework to find the Concrete subspace mask through gradient-based techniques. At the upper level, we focus on learning a shared Concrete mask to identify the subspace, while at the inner level, model merging is performed to maximize the performance of the merged model. We conduct extensive experiments on both vision domain and language domain, and the results demonstrate the effectiveness of our method. The code is available at https://github.com/tanganke/subspace_fusion

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