arXiv subjects

Lin Yang

Publications and source records attributed to Lin Yang.

At least 109 records · Page 6Linked to original sources

arXiv2024

Knowledge-Based Ultra-Low-Latency Semantic Communications for Robotic Edge Intelligence

The 6G mobile networks will feature the widespread deployment of AI algorithms at the network edge, which provides a platform for supporting robotic edge intelligence systems. In such a system, a large-scale knowledge graph (KG) is operated at an edge server as a "remote brain" to guide remote robots on environmental exploration or task execution. In this paper, we present a new air-interface framework targeting the said systems, called knowledge-based robotic semantic communications (SemCom), which consists of a protocol and relevant transmission techniques. First, the proposed robotic SemCom protocol defines a sequence of system operations for executing a given robotic task. They include identification of all task-relevant knowledge paths (KPs) on the KG, semantic matching between KG and object classifier, and uploading of robot's observations for objects recognition and feasible KP identification. Next, to support ultra-low-latency feature transmission (ULL-FT), we propose a novel transmission approach that exploits classifier's robustness, which is measured by classification margin, to compensate for a high bit error probability (BEP) resulting from ultra-low-latency transmission (e.g., short packet and/or no coding). By utilizing the tractable Gaussian mixture model, we derive the relation between BEP and classification margin, which sheds light on system requirements to support ULL-FT. Furthermore, for the case where the classification margin is insufficient for coping with channel distortion, we enhance the ULL-FT approach by studying retransmission and multi-view classification for enlarging the margin and further quantifying corresponding requirements. Finally, experiments using DNNs as classifier models and real datasets are conducted to demonstrate the effectiveness of ULL-FT in communication latency reduction while providing a guarantee on accurate feasible KP identification.

cs.IT↗

arXiv2024

Gapless spin excitations in nanographene-based antiferromagnetic spin-1/2 Heisenberg chains

Haldane's seminal work established two fundamentally different types of excitation spectra for antiferromagnetic Heisenberg quantum spin chains: gapped excitations in integer-spin chains and gapless excitations in half-integer-spin chains. In finite-length half-integer spin chains, quantization, however, induces a gap in the excitation spectrum, with the upper bound given by the Lieb-Schulz-Mattis (LSM) theorem. Here, we investigate the length-dependent excitations in spin-1/2 Heisenberg chains obtained by covalently linking olympicenes--Olympic rings shaped nanographenes carrying spin-1/2--into one-dimensional chains. The large exchange interaction (J~38 mV) between olympicenes and the negligible magnetic anisotropy in these nanographenes make them an ideal platform for studying quantum spin excitations, which we directly measure using inelastic electron tunneling spectroscopy. We observe a power-law decay of the lowest excitation energy with increasing chain length L, remaining below the LSM boundary. In a long chain with L = 50, a nearly V-shaped excitation continuum is observed, reinforcing the system's gapless nature in the thermodynamic limit. Finally, we visualize the standing wave of a single spinon confined in odd-numbered chains using low-bias current maps. Our results provide compelling evidence for the realization of a one-dimensional analog of a gapless spin liquid.

cond-mat.mtrl-sci↗

arXiv2024

Audit-LLM: Multi-Agent Collaboration for Log-based Insider Threat Detection

Log-based insider threat detection (ITD) detects malicious user activities by auditing log entries. Recently, large language models (LLMs) with strong common sense knowledge have emerged in the domain of ITD. Nevertheless, diverse activity types and overlong log files pose a significant challenge for LLMs in directly discerning malicious ones within myriads of normal activities. Furthermore, the faithfulness hallucination issue from LLMs aggravates its application difficulty in ITD, as the generated conclusion may not align with user commands and activity context. In response to these challenges, we introduce Audit-LLM, a multi-agent log-based insider threat detection framework comprising three collaborative agents: (i) the Decomposer agent, breaking down the complex ITD task into manageable sub-tasks using Chain-of-Thought (COT) reasoning;(ii) the Tool Builder agent, creating reusable tools for sub-tasks to overcome context length limitations in LLMs; and (iii) the Executor agent, generating the final detection conclusion by invoking constructed tools. To enhance conclusion accuracy, we propose a pair-wise Evidence-based Multi-agent Debate (EMAD) mechanism, where two independent Executors iteratively refine their conclusions through reasoning exchange to reach a consensus. Comprehensive experiments conducted on three publicly available ITD datasets-CERT r4.2, CERT r5.2, and PicoDomain-demonstrate the superiority of our method over existing baselines and show that the proposed EMAD significantly improves the faithfulness of explanations generated by LLMs.

cs.CR↗

arXiv2024

The pressure-robust weak Galerkin finite element method for Stokes-Darcy problem

In this paper, we propose a pressure-robust weak Galerkin (WG) finite element scheme to solve the Stokes-Darcy problem. To construct the pressure-robust numerical scheme, we use the divergence-free velocity reconstruction operator to modify the test function on the right side of the numerical scheme. We prove the error between the velocity function and its numerical solution is independent of the pressure function and viscosity coefficient. Moreover, the errors of the velocity function and the pressure function reach the optimal convergence orders under the energy norm, as validated by both theoretical analysis and numerical results.

math.NA↗

arXiv2024

Large-scale cervical precancerous screening via AI-assisted cytology whole slide image analysis

Cervical Cancer continues to be the leading gynecological malignancy, posing a persistent threat to women's health on a global scale. Early screening via cytology Whole Slide Image (WSI) diagnosis is critical to prevent this Cancer progression and improve survival rate, but pathologist's single test suffers inevitable false negative due to the immense number of cells that need to be reviewed within a WSI. Though computer-aided automated diagnostic models can serve as strong complement for pathologists, their effectiveness is hampered by the paucity of extensive and detailed annotations, coupled with the limited interpretability and robustness. These factors significantly hinder their practical applicability and reliability in clinical settings. To tackle these challenges, we develop an AI approach, which is a Scalable Technology for Robust and Interpretable Diagnosis built on Extensive data (STRIDE) of cervical cytology. STRIDE addresses the bottleneck of limited annotations by integrating patient-level labels with a small portion of cell-level labels through an end-to-end training strategy, facilitating scalable learning across extensive datasets. To further improve the robustness to real-world domain shifts of cytology slide-making and imaging, STRIDE employs color adversarial samples training that mimic staining and imaging variations. Lastly, to achieve pathologist-level interpretability for the trustworthiness in clinical settings, STRIDE can generate explanatory textual descriptions that simulates pathologists' diagnostic processes by cell image feature and textual description alignment. Conducting extensive experiments and evaluations in 183 medical centers with a dataset of 341,889 WSIs and 0.1 billion cells from cervical cytology patients, STRIDE has demonstrated a remarkable superiority over previous state-of-the-art techniques.

cs.CV↗

arXiv2024

An Empirical Extinction Curve Revealed by Gaia XP Spectra and LAMOST

We present a direct measurement of extinction curves using corrected $Gaia$ XP spectra of the common sources in $Gaia$ DR3 and LAMOST DR7. Our analysis of approximately 370 thousand high-quality samples yielded a high-precision average extinction curve for the Milky Way. After incorporating infrared photometric data from 2MASS and WISE, the extinction curve spans wavelengths from 0.336 to 4.6 $μ$m. We determine an average $R_{55}$ of $2.730 \pm 0.007$, corresponding to $R_V= 3.073 \pm 0.009$, and a near-infrared power-law index $α$ of $1.935 \pm 0.037$. Our study confirmed some intermediate-scale structures within the optical range. Two new features were identified at 540 and 769 nm, and their intensities exhibited a correlation with extinction and $R_V$. This extinction curve can be used to investigate the characteristics of dust and enhance the extinction correction of Milky Way stars. A Python package for this extinction curve is available.

astro-ph.GA↗

arXiv2024

Envelopes created by pseudo-circle families in the Minkowski plane

In this paper, we address the topic of envelopes created by pseudo-circle families in the Minkowski plane, which exhibit some different properties when compared with the Euclidean case. We provide solutions to all four basic problems associated with these envelopes, namely the existence problem, representation problem, problem on the number of envelopes, and problem on the relationships of definitions.

math.DG↗

arXiv2024

WSI-VQA: Interpreting Whole Slide Images by Generative Visual Question Answering

Whole slide imaging is routinely adopted for carcinoma diagnosis and prognosis. Abundant experience is required for pathologists to achieve accurate and reliable diagnostic results of whole slide images (WSI). The huge size and heterogeneous features of WSIs make the workflow of pathological reading extremely time-consuming. In this paper, we propose a novel framework (WSI-VQA) to interpret WSIs by generative visual question answering. WSI-VQA shows universality by reframing various kinds of slide-level tasks in a question-answering pattern, in which pathologists can achieve immunohistochemical grading, survival prediction, and tumor subtyping following human-machine interaction. Furthermore, we establish a WSI-VQA dataset which contains 8672 slide-level question-answering pairs with 977 WSIs. Besides the ability to deal with different slide-level tasks, our generative model which is named Wsi2Text Transformer (W2T) outperforms existing discriminative models in medical correctness, which reveals the potential of our model to be applied in the clinical scenario. Additionally, we also visualize the co-attention mapping between word embeddings and WSIs as an intuitive explanation for diagnostic results. The dataset and related code are available at https://github.com/cpystan/WSI-VQA.

cs.CV↗

arXiv2024

Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification

In the application of Multiple Instance Learning (MIL) methods for Whole Slide Image (WSI) classification, attention mechanisms often focus on a subset of discriminative instances, which are closely linked to overfitting. To mitigate overfitting, we present Attention-Challenging MIL (ACMIL). ACMIL combines two techniques based on separate analyses for attention value concentration. Firstly, UMAP of instance features reveals various patterns among discriminative instances, with existing attention mechanisms capturing only some of them. To remedy this, we introduce Multiple Branch Attention (MBA) to capture more discriminative instances using multiple attention branches. Secondly, the examination of the cumulative value of Top-K attention scores indicates that a tiny number of instances dominate the majority of attention. In response, we present Stochastic Top-K Instance Masking (STKIM), which masks out a portion of instances with Top-K attention values and allocates their attention values to the remaining instances. The extensive experimental results on three WSI datasets with two pre-trained backbones reveal that our ACMIL outperforms state-of-the-art methods. Additionally, through heatmap visualization and UMAP visualization, this paper extensively illustrates ACMIL's effectiveness in suppressing attention value concentration and overcoming the overfitting challenge. The source code is available at \url{https://github.com/dazhangyu123/ACMIL}.

cs.CV↗

arXiv2024

PathGen-1.6M: 1.6 Million Pathology Image-text Pairs Generation through Multi-agent Collaboration

Vision Language Models (VLMs) like CLIP have attracted substantial attention in pathology, serving as backbones for applications such as zero-shot image classification and Whole Slide Image (WSI) analysis. Additionally, they can function as vision encoders when combined with large language models (LLMs) to support broader capabilities. Current efforts to train pathology VLMs rely on pathology image-text pairs from platforms like PubMed, YouTube, and Twitter, which provide limited, unscalable data with generally suboptimal image quality. In this work, we leverage large-scale WSI datasets like TCGA to extract numerous high-quality image patches. We then train a large multimodal model to generate captions for these images, creating PathGen-1.6M, a dataset containing 1.6 million high-quality image-caption pairs. Our approach involves multiple agent models collaborating to extract representative WSI patches, generating and refining captions to obtain high-quality image-text pairs. Extensive experiments show that integrating these generated pairs with existing datasets to train a pathology-specific CLIP model, PathGen-CLIP, significantly enhances its ability to analyze pathological images, with substantial improvements across nine pathology-related zero-shot image classification tasks and three whole-slide image tasks. Furthermore, we construct 200K instruction-tuning data based on PathGen-1.6M and integrate PathGen-CLIP with the Vicuna LLM to create more powerful multimodal models through instruction tuning. Overall, we provide a scalable pathway for high-quality data generation in pathology, paving the way for next-generation general pathology models.

cs.CV↗

arXiv2024

WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole-Slide Images

Whole slide images are the foundation of digital pathology for the diagnosis and treatment of carcinomas. Writing pathology reports is laborious and error-prone for inexperienced pathologists. To reduce the workload and improve clinical automation, we investigate how to generate pathology reports given whole slide images. On the data end, we curated the largest WSI-text dataset (PathText). In specific, we collected nearly 10000 high-quality WSI-text pairs for visual-language models by recognizing and cleaning pathology reports which narrate diagnostic slides in TCGA. On the model end, we propose the multiple instance generative model (MI-Gen) which can produce pathology reports for gigapixel WSIs. We benchmark our model on the largest subset of TCGA-PathoText. Experimental results show our model can generate pathology reports which contain multiple clinical clues and achieve competitive performance on certain slide-level tasks. We observe that simple semantic extraction from the pathology reports can achieve the best performance (0.838 of F1 score) on BRCA subtyping surpassing previous state-of-the-art approaches. Our collected dataset and related code are available.

cs.CV↗

arXiv2024

PathAlign: A vision-language model for whole slide images in histopathology

Microscopic interpretation of histopathology images underlies many important diagnostic and treatment decisions. While advances in vision-language modeling raise new opportunities for analysis of such images, the gigapixel-scale size of whole slide images (WSIs) introduces unique challenges. Additionally, pathology reports simultaneously highlight key findings from small regions while also aggregating interpretation across multiple slides, often making it difficult to create robust image-text pairs. As such, pathology reports remain a largely untapped source of supervision in computational pathology, with most efforts relying on region-of-interest annotations or self-supervision at the patch-level. In this work, we develop a vision-language model based on the BLIP-2 framework using WSIs paired with curated text from pathology reports. This enables applications utilizing a shared image-text embedding space, such as text or image retrieval for finding cases of interest, as well as integration of the WSI encoder with a frozen large language model (LLM) for WSI-based generative text capabilities such as report generation or AI-in-the-loop interactions. We utilize a de-identified dataset of over 350,000 WSIs and diagnostic text pairs, spanning a wide range of diagnoses, procedure types, and tissue types. We present pathologist evaluation of text generation and text retrieval using WSI embeddings, as well as results for WSI classification and workflow prioritization (slide-level triaging). Model-generated text for WSIs was rated by pathologists as accurate, without clinically significant error or omission, for 78% of WSIs on average. This work demonstrates exciting potential capabilities for language-aligned WSI embeddings.

cs.CV↗

arXiv2024

Effects of model size in density-functional-theory study of alloys: A case study of CsPbBr$_2$Cl

The primary challenge of density-functional-theory exploration of alloy systems concerns the size of computational model. Small alloy models can hardly exhibit the chemical disorder properly, while large models induce difficulty in sampling the alignments within the massive material space. We study this problem with the γ phase of the mixed halide inorganic perovskite alloy CsPbBr$_2$Cl. The distribution of alloy formation energy becomes narrower when the size of the model system increases along $\sqrt{2}\times\sqrt{2}\times2$, $2\times2\times2$, and $2\sqrt{2}\times2\sqrt{2}\times2$ models. This is primarily because the distribution of Br distribution parameters, which plays a leading role in determining the formation energy range, is more narrow for larger models. As a result, larger entropy stability effect can be observed with larger models especially at high temperatures, for which the approximation using mixing entropy based on the ideal solution model becomes better.

cond-mat.mtrl-sci↗

arXiv2024

Benchmarking PathCLIP for Pathology Image Analysis

Accurate image classification and retrieval are of importance for clinical diagnosis and treatment decision-making. The recent contrastive language-image pretraining (CLIP) model has shown remarkable proficiency in understanding natural images. Drawing inspiration from CLIP, PathCLIP is specifically designed for pathology image analysis, utilizing over 200,000 image and text pairs in training. While the performance the PathCLIP is impressive, its robustness under a wide range of image corruptions remains unknown. Therefore, we conduct an extensive evaluation to analyze the performance of PathCLIP on various corrupted images from the datasets of Osteosarcoma and WSSS4LUAD. In our experiments, we introduce seven corruption types including brightness, contrast, Gaussian blur, resolution, saturation, hue, and markup at four severity levels. Through experiments, we find that PathCLIP is relatively robustness to image corruptions and surpasses OpenAI-CLIP and PLIP in zero-shot classification. Among the seven corruptions, blur and resolution can cause server performance degradation of the PathCLIP. This indicates that ensuring the quality of images is crucial before conducting a clinical test. Additionally, we assess the robustness of PathCLIP in the task of image-image retrieval, revealing that PathCLIP performs less effectively than PLIP on Osteosarcoma but performs better on WSSS4LUAD under diverse corruptions. Overall, PathCLIP presents impressive zero-shot classification and retrieval performance for pathology images, but appropriate care needs to be taken when using it. We hope this study provides a qualitative impression of PathCLIP and helps understand its differences from other CLIP models.

cs.CV↗

arXiv2024

LLMEmbed: Rethinking Lightweight LLM's Genuine Function in Text Classification

With the booming of Large Language Models (LLMs), prompt-learning has become a promising method mainly researched in various research areas. Recently, many attempts based on prompt-learning have been made to improve the performance of text classification. However, most of these methods are based on heuristic Chain-of-Thought (CoT), and tend to be more complex but less efficient. In this paper, we rethink the LLM-based text classification methodology, propose a simple and effective transfer learning strategy, namely LLMEmbed, to address this classical but challenging task. To illustrate, we first study how to properly extract and fuse the text embeddings via various lightweight LLMs at different network depths to improve their robustness and discrimination, then adapt such embeddings to train the classifier. We perform extensive experiments on publicly available datasets, and the results show that LLMEmbed achieves strong performance while enjoys low training overhead using lightweight LLM backbones compared to recent methods based on larger LLMs, i.e. GPT-3, and sophisticated prompt-based strategies. Our LLMEmbed achieves adequate accuracy on publicly available benchmarks without any fine-tuning while merely use 4% model parameters, 1.8% electricity consumption and 1.5% runtime compared to its counterparts. Code is available at: https://github.com/ChunLiu-cs/LLMEmbed-ACL2024.

cs.CL↗

arXiv2024

Filter Design for Estimation of Stellar Metallicity: Insights from Experiments with Gaia XP Spectra

We search for an optimal filter design for the estimation of stellar metallicity, based on synthetic photometry from Gaia XP spectra convolved with a series of filter-transmission curves defined by different central wavelengths and bandwidths. Unlike previous designs based solely on maximizing metallicity sensitivity, we find that the optimal solution provides a balance between the sensitivity and uncertainty of the spectra. With this optimal filter design, the best precision of metallicity estimates for relatively bright ($G \sim 11.5$) stars is excellent, $σ_{\rm [Fe/H]} = 0.034$\,dex for FGK dwarf stars, superior to that obtained utilizing custom sensitivity-optimized filters (e.g., SkyMapper\,$v$). By selecting hundreds of high-probabability member stars of the open cluster M67, our analysis reveals that the intrinsic photometric-metallicity scatter of these cluster members is only 0.036\,dex, consistent with this level of precision. Our results clearly demonstrate that the internal precision of photometric-metallicity estimates can be extremely high, even providing the opportunity to perform chemical tagging for very large numbers of field stars in the Milky Way. This experiment shows that it is crucial to take into account uncertainty alongside the sensitivity when designing filters for measuring the stellar metallicity and other parameters.

astro-ph.SR↗

arXiv2024

The weak Galerkin finite element method for Stokes interface problems with curved interface

In this paper, we develop a new weak Galerkin finite element scheme for the Stokes interface problem with curved interfaces. We take a unique vector-valued function at the interface and reflect the interface condition in the variational problem. Theoretical analysis and numerical experiments show that the errors can reach the optimal convergence order under the energy norm and $L^2$ norm.

math.NA↗

arXiv2024

Advancing Multimodal Medical Capabilities of Gemini

Many clinical tasks require an understanding of specialized data, such as medical images and genomics, which is not typically found in general-purpose large multimodal models. Building upon Gemini's multimodal models, we develop several models within the new Med-Gemini family that inherit core capabilities of Gemini and are optimized for medical use via fine-tuning with 2D and 3D radiology, histopathology, ophthalmology, dermatology and genomic data. Med-Gemini-2D sets a new standard for AI-based chest X-ray (CXR) report generation based on expert evaluation, exceeding previous best results across two separate datasets by an absolute margin of 1% and 12%, where 57% and 96% of AI reports on normal cases, and 43% and 65% on abnormal cases, are evaluated as "equivalent or better" than the original radiologists' reports. We demonstrate the first ever large multimodal model-based report generation for 3D computed tomography (CT) volumes using Med-Gemini-3D, with 53% of AI reports considered clinically acceptable, although additional research is needed to meet expert radiologist reporting quality. Beyond report generation, Med-Gemini-2D surpasses the previous best performance in CXR visual question answering (VQA) and performs well in CXR classification and radiology VQA, exceeding SoTA or baselines on 17 of 20 tasks. In histopathology, ophthalmology, and dermatology image classification, Med-Gemini-2D surpasses baselines across 18 out of 20 tasks and approaches task-specific model performance. Beyond imaging, Med-Gemini-Polygenic outperforms the standard linear polygenic risk score-based approach for disease risk prediction and generalizes to genetically correlated diseases for which it has never been trained. Although further development and evaluation are necessary in the safety-critical medical domain, our results highlight the potential of Med-Gemini across a wide range of medical tasks.

cs.CV↗