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Lior Shamir

Publications and source records attributed to Lior Shamir.

At least 73 records · Page 4Linked to original sources

Large-scale asymmetry between spin patterns of spiral galaxies

Spin patterns of spiral galaxies can be broadly separated into galaxies with clockwise (Z-wise) patterns and galaxies with counterclockwise (S-wise) spin patterns. While the differences between these patterns are visually noticeable, they are a matter of the perspective of the observer, and therefore in a sufficiently large universe no other differences are expected between galaxies with Z-wise and S-wise patterns. Here large datasets of spiral galaxies separated by their spin patterns are used to show that spiral galaxies with Z-wise spin patterns are photometrically different from spiral galaxies with S-wise patterns. That asymmetry changes based on the direction of observation, such that the observed asymmetry in one hemisphere is aligned with the inverse observed asymmetry in the opposite hemisphere. The results are consistent across different sky surveys (SDSS and PanSTARRS) and analysis methods. The proximity of the most probable asymmetry axis to the galactic pole suggests that the asymmetry might be driven by relativistic beaming. Annotated data from SDSS and PanSTARRS are publicly available.

astro-ph.GA↗

A catalog of automatically detected ring galaxy candidates in PanSTARRS

We developed and applied a computer analysis method to detect ring galaxy candidates in the first data release of PanSTARRS. The method works by applying a low-pass filter, followed by dynamic global thresholding to search for closed regions in the binary mask of each galaxy image. Applying the method to ~3*10^6 PanSTARRS galaxy images produced a catalog of 185 ring galaxy candidates based on their visual appearance.

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Colour asymmetry between galaxies with clockwise and counterclockwise handedness

Recent studies have shown that SDSS galaxies with clockwise patterns are photometrically different from galaxies with anti-clockwise patterns. The purpose of this study is to identify possible differences between the colour of galaxies with clockwise handedness and the colour of galaxies with anti-clockwise handedness. A dataset of 162,514 SDSS galaxies was separated into clockwise and counterclockwise galaxies, and the colours of spiral galaxies with clockwise handedness were compared to the colour of spiral galaxies with anti-clockwise handedness. The results show that the i-r colour in clockwise galaxies in SDSS is significantly higher compared to anti-clockwise SDSS galaxies. The colour difference is strongest between the right ascension of 30$^o$ and 60$^o$, while the RA range of 180$^o$ to 210$^o$ shows a much smaller difference.

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Photometric asymmetry between clockwise and counterclockwise spiral galaxies in SDSS

While galaxies with clockwise and counterclockwise handedness are visually different, they are expected to be symmetric in all of their other characteristics. Previous experiments using both manual analysis and machine vision have shown that the handedness of Sloan Digital Sky Survey (SDSS) galaxies can be predicted with accuracy significantly higher than mere chance using its photometric data alone, showing that SDSS photometry pipeline is sensitive to the handedness of the galaxy. However, some of these previous experiments were based on manually classified galaxies, and the results may therefore be subjected to bias originated from the human perception. This paper describes an experiment based on a set of 162,514 celestial objects classified as clockwise and counterclockwise spiral galaxies in a fully automatic process, showing that the source of the asymmetry is more than the human perception bias. The results are compared to two smaller datasets, and confirm the observation that the handedness of SDSS galaxies can be predicted by their photometric information, and show that the position angle of counterclockwise galaxies computed by SDSS photometry pipeline is consistently higher than the position angle computed for galaxies with clockwise patterns. The experiment also shows statistically significant differences in the measured magnitude, according which galaxies with clockwise patterns are brighter than galaxies with counterclockwise patterns. The magnitude of that difference changes across RA ranges, and exhibits a strong correlation with the cosine of the right ascension.

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Morphology-based query for galaxy image databases

Galaxies of rare morphology are of paramount scientific interest, as they carry important information about the past, present, and future universe. Once a rare galaxy is identified, studying it more effectively requires a set of galaxies of similar morphology, allowing generalization and statistical analysis that cannot be done when $N=1$. Databases generated by digital sky surveys can contain a very large number of galaxy images, and therefore once a rare galaxy of interest is identified it is possible that more instances of the same morphology are also present in the database. However, when a researcher identifies a certain galaxy of rare morphology in the database, it is virtually impossible to mine the database manually in the search for galaxies of similar morphology. Here we propose a computer method that can automatically search databases of galaxy images and identify galaxies that are morphologically similar to a certain user-defined query galaxy. That is, the researcher provides an image of a galaxy of interest, and the pattern recognition system automatically returns a list of galaxies that are visually similar to the target galaxy. The algorithm uses a comprehensive set of descriptors, allowing it to support different types of galaxies, and it is not limited to a finite set of known morphology. While the list of returned galaxies is neither clean nor complete, it contains a far higher frequency of galaxies of the morphology of interest, providing a substantial reduction of the data. Such algorithms can be integrated into data management systems of autonomous digital sky surveys such as the Large Synoptic Survey Telescope (LSST), where the number of galaxies in the database is extremely large. The source code of the method is available at http://vfacstaff.ltu.edu/lshamir/downloads/udat.

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Astrophysics Source Code Library: Here we grow again!

The Astrophysics Source Code Library (ASCL) is a free online registry of research codes; it is indexed by ADS and Web of Science and has over 1300 code entries. Its entries are increasingly used to cite software; citations have been doubling each year since 2012 and every major astronomy journal accepts citations to the ASCL. Codes in the resource cover all aspects of astrophysics research and many programming languages are represented. In the past year, the ASCL added dashboards for users and administrators, started minting Digital Objective Identifiers (DOIs) for software it houses, and added metadata fields requested by users. This presentation covers the ASCL's growth in the past year and the opportunities afforded it as one of the few domain libraries for science research codes.

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Asymmetry between galaxies with clockwise handedness and counterclockwise handedness

While it is clear that spiral galaxies can have different handedness, galaxies with clockwise patterns are assumed to be symmetric in all of their other characteristics to galaxies with counterclockwise patterns. Here we use data from SDSS DR7 to show that photometric data can distinguish between clockwise and counterclockwise galaxies. Pattern recognition algorithms trained and tested using the photometric data of a clean manually crafted dataset of 13,440 spiral galaxies with z<0.25 can predict the handedness of a spiral galaxy in ~64% of the cases, significantly higher than mere chance accuracy of 50% (P<10^{-5}). Experiments with a different dataset of 10,281 automatically classified galaxies showed similar results of $~65% classification accuracy, suggesting that the observed asymmetry is consistent also in datasets annotated in a fully automatic process, and without human intervention. That shows that the photometric data collected by SDSS is sensitive to the handedness of the galaxy. Also, analysis of the number of galaxies classified as clockwise and counterclockwise by crowdsourcing shows that manual classification between spiral and elliptical galaxies can be affected by the handedness of the galaxy, and therefore galaxy morphology analyzed by citizen science campaigns might be biased by the galaxy handedness. Code and data used in the experiment are publicly available, and the experiment can be easily replicated.

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Computer-generated visual morphology catalog of ~3,000,000 SDSS galaxies

We applied computer analysis to classify the broad morphological type of ~3,000,000 SDSS galaxies. The catalog provides for each galaxy the DR8 object ID, right ascension, declination, and the certainty of the automatic classification to spiral or elliptical. The certainty of the classification allows controlling the accuracy of a subset of galaxies by sacrificing some of the least certain classifications. The accuracy of the catalog was tested using galaxies that were classified by the manually annotated Galaxy Zoo catalog. The results show that the catalog contains ~900,000 spiral galaxies and ~600,000 elliptical galaxies with classification certainty that has a statistical agreement rate of ~98% with Galaxy Zoo debiased 'superclean' dataset. That also demonstrates the ability of computers to turn large datasets of galaxy images into structured catalogs of galaxy morphology. The catalog can be downloaded at http://vfacstaff.ltu.edu/lshamir/data/morph_catalog , and can be accessed through public tables on CAS: public.broadMorph.LargeGM, public.broadMorph.LargeWnnGM, and public.broadMorph.SpectraGM. The image analysis software that was used to create the catalog is also publicly available.

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Improving Software Citation and Credit

The past year has seen movement on several fronts for improving software citation, including the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines, the Software Publishing Special Interest Group that was started at January's AAS meeting in Seattle at the request of that organization's Working Group on Astronomical Software, a Sloan-sponsored meeting at GitHub in San Francisco to begin work on a cohesive research software citation-enabling platform, the work of Force11 to "transform and improve" research communication, and WSSSPE's ongoing efforts that include software publication, citation, credit, and sustainability. Brief reports on these efforts were shared at the BoF, after which participants discussed ideas for improving software citation, generating a list of recommendations to the community of software authors, journal publishers, ADS, and research authors. The discussion, recommendations, and feedback will help form recommendations for software citation to those publishers represented in the Software Publishing Special Interest Group and the broader community.

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Galaxy morphology - an unsupervised machine learning approach

Structural properties posses valuable information about the formation and evolution of galaxies, and are important for understanding the past, present, and future universe. Here we use unsupervised machine learning methodology to analyze a network of similarities between galaxy morphological types, and automatically deduce a morphological sequence of galaxies. Application of the method to the EFIGI catalog show that the morphological scheme produced by the algorithm is largely in agreement with the De Vaucouleurs system, demonstrating the ability of computer vision and machine learning methods to automatically profile galaxy morphological sequences. The unsupervised analysis method is based on comprehensive computer vision techniques that compute the visual similarities between the different morphological types. Rather than relying on human cognition, the proposed system deduces the similarities between sets of galaxy images in an automatic manner, and is therefore not limited by the number of galaxies being analyzed. The source code of the method is publicly available, and the protocol of the experiment is included in the paper so that the experiment can be replicated, and the method can be used to analyze user-defined datasets of galaxy images.

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Astrophysics Source Code Library Enhancements

The Astrophysics Source Code Library (ASCL; ascl.net) is a free online registry of codes used in astronomy research; it currently contains over 900 codes and is indexed by ADS. The ASCL has recently moved a new infrastructure into production. The new site provides a true database for the code entries and integrates the WordPress news and information pages and the discussion forum into one site. Previous capabilities are retained and permalinks to ascl.net continue to work. This improvement offers more functionality and flexibility than the previous site, is easier to maintain, and offers new possibilities for collaboration. This presentation covers these recent changes to the ASCL.

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Combining human and machine learning for morphological analysis of galaxy images

The increasing importance of digital sky surveys collecting many millions of galaxy images has reinforced the need for robust methods that can perform morphological analysis of large galaxy image databases. Citizen science initiatives such as Galaxy Zoo showed that large datasets of galaxy images can be analyzed effectively by non-scientist volunteers, but since databases generated by robotic telescopes grow much faster than the processing power of any group of citizen scientists, it is clear that computer analysis is required. Here we propose to use citizen science data for training machine learning systems, and show experimental results demonstrating that machine learning systems can be trained with citizen science data. Our findings show that the performance of machine learning depends on the quality of the data, which can be improved by using samples that have a high degree of agreement between the citizen scientists. The source code of the method is publicly available.

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Automatic detection of peculiar galaxy pairs in Sloan Digital Sky Survey

We applied computational tools for automatic detection of peculiar galaxy pairs. We first detected in SDSS DR7 ~400,000 galaxy images with i magnitude <18 that had more than one point spread function, and then applied a machine learning algorithm that detected ~26,000 galaxy images that had morphology similar to the morphology of galaxy mergers. That dataset was mined using a novelty detection algorithm, producing a short list of 500 most peculiar galaxies as quantitatively determined by the algorithm. Manual examination of these galaxies showed that while most of the galaxy pairs in the list were not necessarily peculiar, numerous unusual galaxy pairs were detected. In this paper we describe the protocol and computational tools used for the detection of peculiar mergers, and provide examples of peculiar galaxy pairs that were detected.

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Ideas for Advancing Code Sharing (A Different Kind of Hack Day)

How do we as a community encourage the reuse of software for telescope operations, data processing, and calibration? How can we support making codes used in research available for others to examine? Continuing the discussion from last year Bring out your codes! BoF session, participants separated into groups to brainstorm ideas to mitigate factors which inhibit code sharing and nurture those which encourage code sharing. The BoF concluded with the sharing of ideas that arose from the brainstorming sessions and a brief summary by the moderator.

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Astrophysics Source Code Library: Incite to Cite!

The Astrophysics Source Code Library (ASCL, http://ascl.net/) is an online registry of over 700 source codes that are of interest to astrophysicists, with more being added regularly. The ASCL actively seeks out codes as well as accepting submissions from the code authors, and all entries are citable and indexed by ADS. All codes have been used to generate results published in or submitted to a refereed journal and are available either via a download site or froman identified source. In addition to being the largest directory of scientist-written astrophysics programs available, the ASCL is also an active participant in the reproducible research movement with presentations at various conferences, numerous blog posts and a journal article. This poster provides a description of the ASCL and the changes that we are starting to see in the astrophysics community as a result of the work we are doing.

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The Astrophysics Source Code Library: Where do we go from here?

The Astrophysics Source Code Library, started in 1999, has in the past three years grown from a repository for 40 codes to a registry of over 700 codes that are now indexed by ADS. What comes next? We examine the future of the ASCL, the challenges facing it, the rationale behind its practices, and the need to balance what we might do with what we have the resources to accomplish.

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Color Differences between Clockwise and Counterclockwise Spiral Galaxies

While spiral galaxies observed from Earth clearly seem to spin in different directions, little is yet known about other differences between galaxies that spin clockwise and galaxies that spin counterclockwise. Here we compared the color of 64,399 spiral galaxies that spin clockwise to 63,215 spiral galaxies that spin counterclockwise. The results show that clockwise galaxies tend to be bluer than galaxies that spin counterclockwise. The probability that the color differences can be attributed to chance is ~0.019.

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Quantitative analysis of spirality in elliptical galaxies

We use an automated galaxy morphology analysis method to quantitatively measure the spirality of galaxies classified manually as elliptical. The data set used for the analysis consists of 60,518 galaxy images with redshift obtained by the Sloan Digital Sky Survey (SDSS) and classified manually by Galaxy Zoo, as well as the RC3 and NA10 catalogues. We measure the spirality of the galaxies by using the Ganalyzer method, which transforms the galaxy image to its radial intensity plot to detect galaxy spirality that is in many cases difficult to notice by manual observation of the raw galaxy image. Experimental results using manually classified elliptical and S0 galaxies with redshift <0.3 suggest that galaxies classified manually as elliptical and S0 exhibit a nonzero signal for the spirality. These results suggest that the human eye observing the raw galaxy image might not always be the most effective way of detecting spirality and curves in the arms of galaxies.

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